Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013B15.5 |
| Conread position: | 483-675 |
| Cow position: | chrX:35278324-35278533 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 484-677 |
| Cow position: | chrX:15329644-15329847 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 484-684 |
| Cow position: | chrX:1503334-1503539 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 485-668 |
| Cow position: | chrX:29408026-29407828 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 176 |
| Conread position: | 489-655 |
| Cow position: | chrX:7806426-7806607 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 497-690 |
| Cow position: | chrX:11856445-11856640 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 498-602 |
| Cow position: | chrX:37910460-37910567 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 499-680 |
| Cow position: | chrX:24054687-24054889 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 500-686 |
| Cow position: | chrX:20801786-20801970 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 500-686 |
| Cow position: | chrX:27276712-27276910 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 184 |
| Conread position: | 501-651 |
| Cow position: | chrX:17630785-17630622 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 501-664 |
| Cow position: | chrX:12304579-12304752 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 501-664 |
| Cow position: | chrX:39126344-39126515 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 501-668 |
| Cow position: | chrX:15233247-15233072 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 501-676 |
| Cow position: | chrX:15305281-15305092 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 501-676 |
| Cow position: | chrX:19930671-19930847 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 501-676 |
| Cow position: | chrX:42011299-42011485 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 501-678 |
| Cow position: | chrX:17541978-17542167 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 501-679 |
| Cow position: | chrX:10411968-10411795 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 501-679 |
| Cow position: | chrX:20376989-20377170 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 501-680 |
| Cow position: | chrX:917349-917171 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 501-680 |
| Cow position: | chrX:22624494-22624688 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 501-680 |
| Cow position: | chrX:23414350-23414168 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 501-680 |
| Cow position: | chrX:46700829-46700642 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 36 |
| Conread position: | 501-682 |
| Cow position: | chrX:32310123-32310313 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 501-684 |
| Cow position: | chrX:6041191-6041002 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 135 |
| Conread position: | 501-684 |
| Cow position: | chrX:10959377-10959184 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 76, 126 |
| Conread position: | 501-684 |
| Cow position: | chrX:18287058-18286871 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 126 |
| Conread position: | 501-684 |
| Cow position: | chrX:25713814-25714007 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 501-684 |
| Cow position: | chrX:29121065-29121253 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 501-684 |
| Cow position: | chrX:39415352-39415159 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 501-685 |
| Cow position: | chrX:11073173-11072986 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 501-685 |
| Cow position: | chrX:41083933-41084129 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 501-686 |
| Cow position: | chrX:29874352-29874159 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 190 |
| Conread position: | 503-681 |
| Cow position: | chrX:25338208-25338393 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 163 |
| Conread position: | 503-695 |
| Cow position: | chrX:6674899-6674694 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 194 |
| Conread position: | 504-598 |
| Cow position: | chrX:29680240-29680143 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 504-663 |
| Cow position: | chrX:35759915-35759745 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 504-680 |
| Cow position: | chrX:46072796-46072602 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 504-686 |
| Cow position: | chrX:6203562-6203754 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 185 |
| Conread position: | 504-686 |
| Cow position: | chrX:17662574-17662387 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 504-686 |
| Cow position: | chrX:38722142-38722332 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 504-690 |
| Cow position: | chrX:8780065-8780262 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 505-691 |
| Cow position: | chrX:30543262-30543068 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 505-692 |
| Cow position: | chrX:8925721-8925920 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 506-686 |
| Cow position: | chrX:7646274-7646473 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 506-687 |
| Cow position: | chrX:23940013-23939839 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 122, 18 |
| Conread position: | 507-680 |
| Cow position: | chrX:32431648-32431827 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 153 |
| Conread position: | 507-690 |
| Cow position: | chrX:37048209-37048026 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 512-686 |
| Cow position: | chrX:27666244-27666071 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 513-696 |
| Cow position: | chrX:28835732-28835533 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 516-676 |
| Cow position: | chrX:39832449-39832616 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 517-686 |
| Cow position: | chrX:6676860-6677041 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 542-676 |
| Cow position: | chrX:1727912-1727767 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.