Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8013E10.3
        

               Conread position:
               1-1073
               

               Cow position:
               chr1:79913629-79914772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1162
               

               Alignm identity:
               775
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               5-756
               

               Cow position:
               chr1:51876078-51875302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               797
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 43
               

               Conread position:
               132-348
               

               Cow position:
               chr1:32912503-32912724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               49, 189
               

               Conread position:
               132-389
               

               Cow position:
               chr1:20378513-20378784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 186
               

               Conread position:
               132-434
               

               Cow position:
               chr1:33899110-33899438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               132-525
               

               Cow position:
               chr1:31363254-31362834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 103
               

               Conread position:
               132-525
               

               Cow position:
               chr1:58171583-58172017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               296
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               132-606
               

               Cow position:
               chr1:38410059-38410543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               132-685
               

               Cow position:
               chr1:8556529-8557135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               390
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 455
               

               Conread position:
               132-723
               

               Cow position:
               chr1:81301961-81302600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               411
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               49, 180
               

               Conread position:
               132-729
               

               Cow position:
               chr1:11324358-11324981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               419
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               49, 107
               

               Conread position:
               132-774
               

               Cow position:
               chr1:31415380-31414696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               437
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               50, 601
               

               Conread position:
               132-857
               

               Cow position:
               chr1:62927312-62928107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               798
               

               Alignm identity:
               500
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               38, 465
               

               Conread position:
               132-897
               

               Cow position:
               chr1:89111676-89112494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               829
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 170
               

               Conread position:
               132-903
               

               Cow position:
               chr1:7199959-7200786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               840
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 30
               

               Conread position:
               132-907
               

               Cow position:
               chr1:99916280-99917128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               851
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 189
               

               Conread position:
               132-919
               

               Cow position:
               chr1:21431456-21430611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               855
               

               Alignm identity:
               562
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 158
               

               Conread position:
               132-919
               

               Cow position:
               chr1:58339774-58340615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               852
               

               Alignm identity:
               537
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               49, 115
               

               Conread position:
               132-919
               

               Cow position:
               chr1:72986304-72987156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               856
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 574
               

               Conread position:
               132-922
               

               Cow position:
               chr1:18024953-18024116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               847
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-922
               

               Cow position:
               chr1:19441682-19440841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               848
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 367
               

               Conread position:
               132-922
               

               Cow position:
               chr1:24441204-24440357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               857
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 186
               

               Conread position:
               132-922
               

               Cow position:
               chr1:26812229-26811371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               862
               

               Alignm identity:
               553
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-922
               

               Cow position:
               chr1:33854125-33854970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               849
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 516
               

               Conread position:
               132-922
               

               Cow position:
               chr1:61332118-61331258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               561
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               132-922
               

               Cow position:
               chr1:67005724-67006578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               859
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-922
               

               Cow position:
               chr1:79633708-79632851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               563
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               132-922
               

               Cow position:
               chr1:89186597-89185761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               845
               

               Alignm identity:
               528
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               49, 176
               

               Conread position:
               132-923
               

               Cow position:
               chr1:6197432-6196575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               863
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 136
               

               Conread position:
               132-923
               

               Cow position:
               chr1:8471316-8470458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               863
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-923
               

               Cow position:
               chr1:10725466-10726328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               867
               

               Alignm identity:
               554
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 104
               

               Conread position:
               132-923
               

               Cow position:
               chr1:17938905-17938048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 20
               

               Conread position:
               132-923
               

               Cow position:
               chr1:18195467-18196300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               848
               

               Alignm identity:
               533
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               38, 204
               

               Conread position:
               132-923
               

               Cow position:
               chr1:18962884-18962044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               856
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 198
               

               Conread position:
               132-923
               

               Cow position:
               chr1:20831728-20832586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               862
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 574
               

               Conread position:
               132-923
               

               Cow position:
               chr1:20847162-20846308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               857
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 569
               

               Conread position:
               132-923
               

               Cow position:
               chr1:25552650-25553507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               866
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 404
               

               Conread position:
               132-923
               

               Cow position:
               chr1:29037385-29038245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               132-923
               

               Cow position:
               chr1:31351918-31351066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               861
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 132
               

               Conread position:
               132-923
               

               Cow position:
               chr1:40057959-40058798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               847
               

               Alignm identity:
               543
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               132-923
               

               Cow position:
               chr1:40681887-40681025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               866
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 98
               

               Conread position:
               132-923
               

               Cow position:
               chr1:46613449-46612592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               561
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 103
               

               Conread position:
               132-923
               

               Cow position:
               chr1:54932770-54933632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               568
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 578
               

               Conread position:
               132-923
               

               Cow position:
               chr1:55274194-55273339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               860
               

               Alignm identity:
               564
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 162
               

               Conread position:
               132-923
               

               Cow position:
               chr1:56169803-56170664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               868
               

               Alignm identity:
               549
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               38, 137
               

               Conread position:
               132-923
               

               Cow position:
               chr1:57363485-57362628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               860
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 572
               

               Conread position:
               132-923
               

               Cow position:
               chr1:57570681-57571537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               866
               

               Alignm identity:
               553
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 129
               

               Conread position:
               132-923
               

               Cow position:
               chr1:59484020-59483162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               868
               

               Alignm identity:
               574
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               132-923
               

               Cow position:
               chr1:61096341-61097205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               868
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 565
               

               Conread position:
               132-923
               

               Cow position:
               chr1:63602941-63602083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               863
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 186
               

               Conread position:
               132-923
               

               Cow position:
               chr1:66490425-66491282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               862
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 186
               

               Conread position:
               132-923
               

               Cow position:
               chr1:67832293-67831430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 612
               

               Conread position:
               132-923
               

               Cow position:
               chr1:69406001-69406863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 577
               

               Conread position:
               132-923
               

               Cow position:
               chr1:69769659-69770520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               867
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 530
               

               Conread position:
               132-923
               

               Cow position:
               chr1:71559901-71559045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               859
               

               Alignm identity:
               561
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-923
               

               Cow position:
               chr1:72996827-72997672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               856
               

               Alignm identity:
               576
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 133
               

               Conread position:
               132-923
               

               Cow position:
               chr1:73565634-73564773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 103
               

               Conread position:
               132-923
               

               Cow position:
               chr1:76877875-76878735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 545
               

               Conread position:
               132-923
               

               Cow position:
               chr1:77747589-77748447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               545
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               40, 171
               

               Conread position:
               132-923
               

               Cow position:
               chr1:78922167-78921304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               867
               

               Alignm identity:
               566
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 168
               

               Conread position:
               132-923
               

               Cow position:
               chr1:82478828-82479688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               866
               

               Alignm identity:
               568
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-923
               

               Cow position:
               chr1:82863662-82864502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               854
               

               Alignm identity:
               571
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 490
               

               Conread position:
               132-923
               

               Cow position:
               chr1:84446528-84447386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               865
               

               Alignm identity:
               562
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 53
               

               Conread position:
               132-923
               

               Cow position:
               chr1:85794800-85795653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               858
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 480
               

               Conread position:
               132-923
               

               Cow position:
               chr1:86545293-86544438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               562
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 465
               

               Conread position:
               132-923
               

               Cow position:
               chr1:86600172-86599306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               869
               

               Alignm identity:
               553
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 572
               

               Conread position:
               132-923
               

               Cow position:
               chr1:89090695-89089832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               867
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 322
               

               Conread position:
               132-923
               

               Cow position:
               chr1:89431246-89432108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               556
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 612
               

               Conread position:
               132-923
               

               Cow position:
               chr1:89493369-89492536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               843
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 216
               

               Conread position:
               132-923
               

               Cow position:
               chr1:91104886-91105743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               862
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 24
               

               Conread position:
               132-923
               

               Cow position:
               chr1:91673075-91673936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               866
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 455
               

               Conread position:
               132-927
               

               Cow position:
               chr1:28676925-28677754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               848
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 126
               

               Conread position:
               132-1043
               

               Cow position:
               chr1:56424755-56425757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1005
               

               Alignm identity:
               644
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 575
               

               Conread position:
               132-1043
               

               Cow position:
               chr1:88178701-88179703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1007
               

               Alignm identity:
               655
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-1044
               

               Cow position:
               chr1:23578957-23577982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               988
               

               Alignm identity:
               661
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 132
               

               Conread position:
               132-1044
               

               Cow position:
               chr1:73762681-73761706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               983
               

               Alignm identity:
               629
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               132-1062
               

               Cow position:
               chr1:43568654-43567685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               995
               

               Alignm identity:
               639
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 93
               

               Conread position:
               132-1065
               

               Cow position:
               chr1:86363318-86364326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1024
               

               Alignm identity:
               682
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 200
               

               Conread position:
               132-1068
               

               Cow position:
               chr1:17033746-17032729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1027
               

               Alignm identity:
               657
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 135
               

               Conread position:
               132-1068
               

               Cow position:
               chr1:49267726-49268749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1028
               

               Alignm identity:
               660
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 583
               

               Conread position:
               132-1071
               

               Cow position:
               chr1:93857365-93858384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1025
               

               Alignm identity:
               672
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 321
               

               Conread position:
               132-1073
               

               Cow position:
               chr1:101833250-101834246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1013
               

               Alignm identity:
               638
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 171
               

               Conread position:
               132-1076
               

               Cow position:
               chr1:51967107-51968090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               996
               

               Alignm identity:
               628
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 516
               

               Conread position:
               132-1077
               

               Cow position:
               chr1:8827863-8828898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1041
               

               Alignm identity:
               670
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 578
               

               Conread position:
               132-1077
               

               Cow position:
               chr1:88389178-88390182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1030
               

               Alignm identity:
               686
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 121
               

               Conread position:
               132-1078
               

               Cow position:
               chr1:25088826-25087829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1016
               

               Alignm identity:
               697
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 32
               

               Conread position:
               132-1080
               

               Cow position:
               chr1:31400560-31399611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               985
               

               Alignm identity:
               632
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 257
               

               Conread position:
               132-1080
               

               Cow position:
               chr1:54164192-54163221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1004
               

               Alignm identity:
               685
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 124
               

               Conread position:
               133-376
               

               Cow position:
               chr1:88393727-88393477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               54, 174
               

               Conread position:
               133-869
               

               Cow position:
               chr1:17293007-17292213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               804
               

               Alignm identity:
               514
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               56, 160
               

               Conread position:
               133-923
               

               Cow position:
               chr1:91901863-91902724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               864
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 576
               

               Conread position:
               133-940
               

               Cow position:
               chr1:44963631-44962770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               886
               

               Alignm identity:
               579
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 169
               

               Conread position:
               133-1080
               

               Cow position:
               chr1:23098499-23099505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1019
               

               Alignm identity:
               673
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 297
               

               Conread position:
               133-1080
               

               Cow position:
               chr1:56645034-56644016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1027
               

               Alignm identity:
               681
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 439
               

               Conread position:
               135-370
               

               Cow position:
               chr1:77109273-77109025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               45, 153
               

               Conread position:
               136-909
               

               Cow position:
               chr1:53309801-53308972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               838
               

               Alignm identity:
               542
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 25
               

               Conread position:
               136-909
               

               Cow position:
               chr1:68846854-68846034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               833
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 197
               

               Conread position:
               136-923
               

               Cow position:
               chr1:63341622-63340768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               858
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 570
               

               Conread position:
               136-1077
               

               Cow position:
               chr1:85530537-85529549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1000
               

               Alignm identity:
               664
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 239
               

               Conread position:
               137-517
               

               Cow position:
               chr1:86510447-86510839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 78
               

               Conread position:
               142-925
               

               Cow position:
               chr1:52864416-52863586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               839
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 395
               

               Conread position:
               143-1073
               

               Cow position:
               chr1:57744372-57743386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1002
               

               Alignm identity:
               669
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 61
               

               Conread position:
               144-886
               

               Cow position:
               chr1:17237161-17236393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               772
               

               Alignm identity:
               279
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               380, 375
               

               Conread position:
               144-1068
               

               Cow position:
               chr1:33443304-33442332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               996
               

               Alignm identity:
               669
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 134
               

               Conread position:
               144-1080
               

               Cow position:
               chr1:81926320-81925313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1019
               

               Alignm identity:
               702
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 38
               

               Conread position:
               149-744
               

               Cow position:
               chr1:71677195-71676582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               421
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               32, 144
               

               Conread position:
               152-919
               

               Cow position:
               chr1:61748580-61747758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               832
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 457
               

               Conread position:
               153-718
               

               Cow position:
               chr1:57694778-57694171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 463
               

               Conread position:
               153-1080
               

               Cow position:
               chr1:58196176-58195224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               985
               

               Alignm identity:
               658
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               157-989
               

               Cow position:
               chr1:10006107-10005231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               887
               

               Alignm identity:
               591
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 430
               

               Conread position:
               159-923
               

               Cow position:
               chr1:71794403-71795237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               840
               

               Alignm identity:
               548
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 143
               

               Conread position:
               159-1019
               

               Cow position:
               chr1:86705021-86705945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               936
               

               Alignm identity:
               607
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 425
               

               Conread position:
               172-517
               

               Cow position:
               chr1:58169529-58169168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               187-735
               

               Cow position:
               chr1:67975291-67974723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               372
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               18, 129
               

               Conread position:
               201-923
               

               Cow position:
               chr1:78587533-78586753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               783
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 27
               

               Conread position:
               202-726
               

               Cow position:
               chr1:62141996-62141456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 66
               

               Conread position:
               202-854
               

               Cow position:
               chr1:56631314-56632005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               435
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               79, 263
               

               Conread position:
               202-889
               

               Cow position:
               chr1:73554185-73554915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               469
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               76, 102
               

               Conread position:
               202-917
               

               Cow position:
               chr1:79553420-79554194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               777
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 493
               

               Conread position:
               202-922
               

               Cow position:
               chr1:5504865-5505642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 64
               

               Conread position:
               202-922
               

               Cow position:
               chr1:82090839-82091596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               768
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 101
               

               Conread position:
               202-923
               

               Cow position:
               chr1:9261437-9262201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               775
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 224
               

               Conread position:
               202-923
               

               Cow position:
               chr1:13438046-13438800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               764
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               202-923
               

               Cow position:
               chr1:19236571-19235792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               202-923
               

               Cow position:
               chr1:20527086-20527864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               783
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               202-923
               

               Cow position:
               chr1:27310131-27309387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               761
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               202-923
               

               Cow position:
               chr1:28713964-28714740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               780
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               202-923
               

               Cow position:
               chr1:28812317-28811537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               783
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 495
               

               Conread position:
               202-923
               

               Cow position:
               chr1:48345110-48345873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               776
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 334
               

               Conread position:
               202-923
               

               Cow position:
               chr1:55779797-55780573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               780
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               202-923
               

               Cow position:
               chr1:63045810-63046586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               783
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 495
               

               Conread position:
               202-923
               

               Cow position:
               chr1:72767098-72766331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               770
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 395
               

               Conread position:
               202-923
               

               Cow position:
               chr1:94662579-94663358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               202-924
               

               Cow position:
               chr1:22481735-22480959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               780
               

               Alignm identity:
               521
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 498
               

               Conread position:
               202-925
               

               Cow position:
               chr1:72804584-72803809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               782
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 405
               

               Conread position:
               202-1032
               

               Cow position:
               chr1:15149718-15148812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               910
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 495
               

               Conread position:
               202-1068
               

               Cow position:
               chr1:8603036-8602109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               944
               

               Alignm identity:
               612
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               202-1068
               

               Cow position:
               chr1:26587876-26588817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               945
               

               Alignm identity:
               617
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 494
               

               Conread position:
               202-1071
               

               Cow position:
               chr1:76618548-76617617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               942
               

               Alignm identity:
               626
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 104
               

               Conread position:
               202-1074
               

               Cow position:
               chr1:13251594-13250673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               944
               

               Alignm identity:
               604
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 92
               

               Conread position:
               202-1074
               

               Cow position:
               chr1:63048504-63049440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               950
               

               Alignm identity:
               591
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               202-1077
               

               Cow position:
               chr1:7629913-7630816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               927
               

               Alignm identity:
               600
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 48
               

               Conread position:
               202-1077
               

               Cow position:
               chr1:14562281-14561340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               952
               

               Alignm identity:
               626
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 92
               

               Conread position:
               202-1077
               

               Cow position:
               chr1:59248821-59247918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               920
               

               Alignm identity:
               616
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 88
               

               Conread position:
               202-1077
               

               Cow position:
               chr1:74881419-74880525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               922
               

               Alignm identity:
               570
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               37, 41
               

               Conread position:
               202-1080
               

               Cow position:
               chr1:14529531-14528588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               958
               

               Alignm identity:
               621
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 25
               

               Conread position:
               202-1080
               

               Cow position:
               chr1:54116177-54117107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               947
               

               Alignm identity:
               675
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 41
               

               Conread position:
               203-634
               

               Cow position:
               chr1:101524461-101524004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               295
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               92, 351
               

               Conread position:
               203-729
               

               Cow position:
               chr1:46838721-46839271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               364
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               81, 393
               

               Conread position:
               203-922
               

               Cow position:
               chr1:33715883-33716664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               785
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 454
               

               Conread position:
               203-923
               

               Cow position:
               chr1:21377632-21376858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               778
               

               Alignm identity:
               489
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               99, 87
               

               Conread position:
               203-923
               

               Cow position:
               chr1:42054604-42053879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               468
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               68, 186
               

               Conread position:
               203-923
               

               Cow position:
               chr1:56205884-56205109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               781
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 411
               

               Conread position:
               203-923
               

               Cow position:
               chr1:69504445-69503669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               782
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 57
               

               Conread position:
               203-1054
               

               Cow position:
               chr1:28251300-28252221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               932
               

               Alignm identity:
               616
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 65
               

               Conread position:
               203-1080
               

               Cow position:
               chr1:98657023-98656101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               938
               

               Alignm identity:
               610
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 143
               

               Conread position:
               204-1076
               

               Cow position:
               chr1:38422382-38423312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               941
               

               Alignm identity:
               618
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 75
               

               Conread position:
               206-752
               

               Cow position:
               chr1:82519193-82518607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               393
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               96, 75
               

               Conread position:
               206-912
               

               Cow position:
               chr1:20867674-20866917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               760
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 338
               

               Conread position:
               207-1032
               

               Cow position:
               chr1:64900631-64901489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               878
               

               Alignm identity:
               545
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               95, 35
               

               Conread position:
               208-1074
               

               Cow position:
               chr1:56141422-56140521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               921
               

               Alignm identity:
               597
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 463
               

               Conread position:
               209-923
               

               Cow position:
               chr1:69671689-69670917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               778
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 378
               

               Conread position:
               210-484
               

               Cow position:
               chr1:5492071-5492364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               70, 93
               

               Conread position:
               210-525
               

               Cow position:
               chr1:88676418-88676734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               69, 96
               

               Conread position:
               210-923
               

               Cow position:
               chr1:66972224-66971467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               765
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 81
               

               Conread position:
               213-896
               

               Cow position:
               chr1:79295760-79296481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               468
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               118, 29
               

               Conread position:
               213-922
               

               Cow position:
               chr1:16798158-16797399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               765
               

               Alignm identity:
               479
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 78
               

               Conread position:
               213-922
               

               Cow position:
               chr1:52755596-52754831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               772
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 77
               

               Conread position:
               213-923
               

               Cow position:
               chr1:38711648-38712418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               775
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 78
               

               Conread position:
               214-922
               

               Cow position:
               chr1:44677620-44678326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               459
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               99, 5
               

               Conread position:
               214-923
               

               Cow position:
               chr1:100420542-100421289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 109
               

               Conread position:
               218-923
               

               Cow position:
               chr1:75402837-75403599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               767
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 215
               

               Conread position:
               219-762
               

               Cow position:
               chr1:65735051-65734495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               364
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               112, 133
               

               Conread position:
               227-923
               

               Cow position:
               chr1:95474938-95474205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 64
               

               Conread position:
               228-915
               

               Cow position:
               chr1:57505742-57506488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               476
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               62, 469
               

               Conread position:
               234-1078
               

               Cow position:
               chr1:61220392-61221297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               918
               

               Alignm identity:
               626
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 61
               

               Conread position:
               240-1071
               

               Cow position:
               chr1:47455014-47454110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               908
               

               Alignm identity:
               589
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 454
               

               Conread position:
               247-1068
               

               Cow position:
               chr1:20079180-20078295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               894
               

               Alignm identity:
               602
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               265-1059
               

               Cow position:
               chr1:25120280-25119435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               861
               

               Alignm identity:
               595
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 254
               

               Conread position:
               267-922
               

               Cow position:
               chr1:72812156-72812859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               455
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               33, 8
               

               Conread position:
               283-924
               

               Cow position:
               chr1:42056626-42057290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 164
               

               Conread position:
               303-1072
               

               Cow position:
               chr1:61591976-61591171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               821
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 241
               

               Conread position:
               336-1080
               

               Cow position:
               chr1:53578142-53578933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               797
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 19
               

               Conread position:
               348-922
               

               Cow position:
               chr1:6165081-6165680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               388
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               357-1080
               

               Cow position:
               chr1:28282891-28283627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               763
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 23
               

               Conread position:
               372-1073
               

               Cow position:
               chr1:26446275-26447002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               463
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               19, 57
               

               Conread position:
               372-1077
               

               Cow position:
               chr1:41093999-41093255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               759
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               386-1068
               

               Cow position:
               chr1:10704998-10704310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 111
               

               Conread position:
               387-793
               

               Cow position:
               chr1:33987692-33987272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 182
               

               Conread position:
               387-852
               

               Cow position:
               chr1:71976512-71977003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               309
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               55, 211
               

               Conread position:
               387-852
               

               Cow position:
               chr1:71978023-71978516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 213
               

               Conread position:
               387-923
               

               Cow position:
               chr1:52355537-52354969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               374
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               52, 285
               

               Conread position:
               388-947
               

               Cow position:
               chr1:34362787-34363367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               388-1080
               

               Cow position:
               chr1:29606916-29606167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               757
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 28
               

               Conread position:
               389-721
               

               Cow position:
               chr1:86451478-86451808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 145
               

               Conread position:
               389-915
               

               Cow position:
               chr1:65726548-65726020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               359
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               74, 56
               

               Conread position:
               389-922
               

               Cow position:
               chr1:58218242-58218799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 139
               

               Conread position:
               389-925
               

               Cow position:
               chr1:50939878-50939316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               373
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               48, 150
               

               Conread position:
               389-1068
               

               Cow position:
               chr1:28876235-28876964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 282
               

               Conread position:
               389-1078
               

               Cow position:
               chr1:51893254-51892532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 190
               

               Conread position:
               389-1080
               

               Cow position:
               chr1:86613447-86614169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 56
               

               Conread position:
               389-1080
               

               Cow position:
               chr1:102552154-102552853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 147
               

               Conread position:
               390-676
               

               Cow position:
               chr1:38383433-38383139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               55, 196
               

               Conread position:
               390-682
               

               Cow position:
               chr1:30440303-30440600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               46, 33
               

               Conread position:
               390-694
               

               Cow position:
               chr1:35246461-35246780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               54, 82
               

               Conread position:
               390-694
               

               Cow position:
               chr1:49133035-49132716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               54, 310
               

               Conread position:
               390-726
               

               Cow position:
               chr1:30306151-30305799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               390-736
               

               Cow position:
               chr1:73403925-73404280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 33
               

               Conread position:
               390-752
               

               Cow position:
               chr1:51488372-51487996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               12, 167
               

               Conread position:
               390-758
               

               Cow position:
               chr1:65031672-65031304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               390-775
               

               Cow position:
               chr1:70535327-70534930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               271
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               23, 229
               

               Conread position:
               390-801
               

               Cow position:
               chr1:71017207-71016786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               50, 108
               

               Conread position:
               390-847
               

               Cow position:
               chr1:37864571-37864113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               290
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 194
               

               Conread position:
               390-870
               

               Cow position:
               chr1:74039798-74039311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               312
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               46, 261
               

               Conread position:
               390-880
               

               Cow position:
               chr1:81766264-81765747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               335
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 117
               

               Conread position:
               390-896
               

               Cow position:
               chr1:21114283-21113751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               347
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 167
               

               Conread position:
               390-898
               

               Cow position:
               chr1:44701645-44701114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 285
               

               Conread position:
               390-904
               

               Cow position:
               chr1:67317844-67318345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               390-907
               

               Cow position:
               chr1:93413710-93413170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 26
               

               Conread position:
               390-910
               

               Cow position:
               chr1:98989271-98988735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               350
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               218, 56
               

               Conread position:
               390-919
               

               Cow position:
               chr1:82909691-82909132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               369
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               46, 33
               

               Conread position:
               390-922
               

               Cow position:
               chr1:61747028-61746477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               359
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               53, 141
               

               Conread position:
               390-922
               

               Cow position:
               chr1:77554859-77554299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 17
               

               Conread position:
               390-922
               

               Cow position:
               chr1:85143086-85142511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               378
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               52, 253
               

               Conread position:
               390-922
               

               Cow position:
               chr1:99675198-99674632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:3970126-3969581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               363
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               46, 143
               

               Conread position:
               390-923
               

               Cow position:
               chr1:7324209-7324742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 170
               

               Conread position:
               390-923
               

               Cow position:
               chr1:7711921-7712478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               366
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               46, 114
               

               Conread position:
               390-923
               

               Cow position:
               chr1:19158319-19157752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:26537048-26536481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:30531882-30531329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 235
               

               Conread position:
               390-923
               

               Cow position:
               chr1:31534990-31535556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 330
               

               Conread position:
               390-923
               

               Cow position:
               chr1:35598672-35598106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 281
               

               Conread position:
               390-923
               

               Cow position:
               chr1:47079042-47078477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:51883753-51884306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 164
               

               Conread position:
               390-923
               

               Cow position:
               chr1:53519803-53520351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               354
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               54, 279
               

               Conread position:
               390-923
               

               Cow position:
               chr1:54472276-54471709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:55044124-55043559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               369
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               49, 253
               

               Conread position:
               390-923
               

               Cow position:
               chr1:56666238-56666805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:61342564-61342007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 278
               

               Conread position:
               390-923
               

               Cow position:
               chr1:68145833-68145266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               372
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               49, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:68610632-68610073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               390-923
               

               Cow position:
               chr1:73463103-73463671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 195
               

               Conread position:
               390-923
               

               Cow position:
               chr1:76873020-76873582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:80564939-80564372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:83169580-83170147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:90393616-90393054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               371
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               54, 12
               

               Conread position:
               390-923
               

               Cow position:
               chr1:98354257-98353690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-923
               

               Cow position:
               chr1:99865059-99865622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 195
               

               Conread position:
               390-925
               

               Cow position:
               chr1:53368346-53368888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               345
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               46, 298
               

               Conread position:
               390-1016
               

               Cow position:
               chr1:72090156-72089515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               662
               

               Alignm identity:
               420
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               50, 123
               

               Conread position:
               390-1021
               

               Cow position:
               chr1:54390982-54390315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 304
               

               Conread position:
               390-1028
               

               Cow position:
               chr1:88563773-88563104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               674
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 170
               

               Conread position:
               390-1043
               

               Cow position:
               chr1:50257645-50258321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               426
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               52, 85
               

               Conread position:
               390-1044
               

               Cow position:
               chr1:55220375-55219670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 228
               

               Conread position:
               390-1046
               

               Cow position:
               chr1:100340431-100339766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 55
               

               Conread position:
               390-1054
               

               Cow position:
               chr1:76860883-76860176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 73
               

               Conread position:
               390-1068
               

               Cow position:
               chr1:8517932-8517202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-1068
               

               Cow position:
               chr1:30883515-30882786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 264
               

               Conread position:
               390-1068
               

               Cow position:
               chr1:89234894-89234164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 282
               

               Conread position:
               390-1069
               

               Cow position:
               chr1:74536559-74535841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 143
               

               Conread position:
               390-1071
               

               Cow position:
               chr1:7162670-7161947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 163
               

               Conread position:
               390-1072
               

               Cow position:
               chr1:42888340-42887633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               453
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               71, 50
               

               Conread position:
               390-1074
               

               Cow position:
               chr1:16838455-16839192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 172
               

               Conread position:
               390-1076
               

               Cow position:
               chr1:9513232-9512503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               465
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               54, 259
               

               Conread position:
               390-1076
               

               Cow position:
               chr1:26053978-26053272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 19
               

               Conread position:
               390-1077
               

               Cow position:
               chr1:88530831-88530114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 234
               

               Conread position:
               390-1078
               

               Cow position:
               chr1:5364118-5364845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 88
               

               Conread position:
               390-1078
               

               Cow position:
               chr1:40752790-40753521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               483
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               47, 94
               

               Conread position:
               390-1080
               

               Cow position:
               chr1:19146028-19145314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               478
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               49, 95
               

               Conread position:
               390-1080
               

               Cow position:
               chr1:24594748-24595443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               439
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               54, 127
               

               Conread position:
               390-1080
               

               Cow position:
               chr1:53649790-53650527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 314
               

               Conread position:
               390-1080
               

               Cow position:
               chr1:66685374-66684685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 85
               

               Conread position:
               390-1080
               

               Cow position:
               chr1:101787796-101787107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 167
               

               Conread position:
               391-630
               

               Cow position:
               chr1:66775579-66775830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 59
               

               Conread position:
               391-642
               

               Cow position:
               chr1:81868334-81868072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               57, 32
               

               Conread position:
               391-888
               

               Cow position:
               chr1:77165981-77166498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               358
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               48, 11
               

               Conread position:
               391-911
               

               Cow position:
               chr1:3012650-3012125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               352
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               43, 56
               

               Conread position:
               391-919
               

               Cow position:
               chr1:64946005-64945452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               349
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 224
               

               Conread position:
               391-923
               

               Cow position:
               chr1:20001853-20001304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               363
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               51, 100
               

               Conread position:
               391-923
               

               Cow position:
               chr1:20543365-20543927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               365
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               51, 172
               

               Conread position:
               391-923
               

               Cow position:
               chr1:29428736-29429309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               370
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               48, 332
               

               Conread position:
               391-923
               

               Cow position:
               chr1:82920999-82920436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               369
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               48, 87
               

               Conread position:
               391-923
               

               Cow position:
               chr1:88027965-88028517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               355
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               391-1028
               

               Cow position:
               chr1:71135041-71135714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 233
               

               Conread position:
               391-1029
               

               Cow position:
               chr1:56439272-56438615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               675
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 142
               

               Conread position:
               391-1032
               

               Cow position:
               chr1:53487619-53488295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               684
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 7
               

               Conread position:
               391-1079
               

               Cow position:
               chr1:52053960-52054704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 87
               

               Conread position:
               392-925
               

               Cow position:
               chr1:4276792-4277355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               393-857
               

               Cow position:
               chr1:71920212-71920712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               335
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               52, 276
               

               Conread position:
               393-897
               

               Cow position:
               chr1:2998450-2998976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               347
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               143, 49
               

               Conread position:
               393-919
               

               Cow position:
               chr1:1106517-1107056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               367
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               51, 57
               

               Conread position:
               393-919
               

               Cow position:
               chr1:3931200-3930639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               359
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               14, 315
               

               Conread position:
               393-1080
               

               Cow position:
               chr1:30065525-30066251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 49
               

               Conread position:
               393-1080
               

               Cow position:
               chr1:77656686-77657416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 169
               

               Conread position:
               394-721
               

               Cow position:
               chr1:29411068-29410725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               48, 280
               

               Conread position:
               394-874
               

               Cow position:
               chr1:12468648-12468143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               342
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               50, 202
               

               Conread position:
               394-918
               

               Cow position:
               chr1:85807472-85806932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 231
               

               Conread position:
               394-922
               

               Cow position:
               chr1:57679214-57678679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               351
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               50, 104
               

               Conread position:
               394-923
               

               Cow position:
               chr1:14240925-14240362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 142
               

               Conread position:
               394-923
               

               Cow position:
               chr1:30494710-30495259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 228
               

               Conread position:
               394-923
               

               Cow position:
               chr1:57759057-57759614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 276
               

               Conread position:
               394-932
               

               Cow position:
               chr1:72086741-72087298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               358
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               45, 278
               

               Conread position:
               394-1044
               

               Cow position:
               chr1:59014265-59013560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 289
               

               Conread position:
               394-1068
               

               Cow position:
               chr1:102814615-102815341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 232
               

               Conread position:
               394-1074
               

               Cow position:
               chr1:73443708-73443009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 152
               

               Conread position:
               394-1077
               

               Cow position:
               chr1:56856978-56857695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 189
               

               Conread position:
               395-1077
               

               Cow position:
               chr1:76555567-76554841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 230
               

               Conread position:
               396-756
               

               Cow position:
               chr1:31814166-31814540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               56, 11
               

               Conread position:
               396-922
               

               Cow position:
               chr1:27544709-27545259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               370
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               55, 34
               

               Conread position:
               396-922
               

               Cow position:
               chr1:55328083-55327541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 144
               

               Conread position:
               396-1080
               

               Cow position:
               chr1:86021205-86020475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               481
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               53, 230
               

               Conread position:
               397-923
               

               Cow position:
               chr1:23861564-23861004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 275
               

               Conread position:
               397-1046
               

               Cow position:
               chr1:42821123-42821808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 129
               

               Conread position:
               399-854
               

               Cow position:
               chr1:18137286-18136809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               311
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               43, 73
               

               Conread position:
               399-923
               

               Cow position:
               chr1:31646474-31645924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 262
               

               Conread position:
               400-689
               

               Cow position:
               chr1:78074036-78073730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               23, 83
               

               Conread position:
               400-729
               

               Cow position:
               chr1:61536563-61536233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               400-922
               

               Cow position:
               chr1:39141400-39140848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               361
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               36, 108
               

               Conread position:
               400-929
               

               Cow position:
               chr1:39250291-39249731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 111
               

               Conread position:
               401-880
               

               Cow position:
               chr1:37299833-37299339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               315
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               44, 120
               

               Conread position:
               401-1076
               

               Cow position:
               chr1:97141856-97141162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               426
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               403-752
               

               Cow position:
               chr1:57855840-57855480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               403-922
               

               Cow position:
               chr1:45006125-45006645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               334
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               41, 129
               

               Conread position:
               403-1080
               

               Cow position:
               chr1:70064267-70064967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 270
               

               Conread position:
               404-923
               

               Cow position:
               chr1:16819767-16820311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               355
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               19, 231
               

               Conread position:
               404-1080
               

               Cow position:
               chr1:32912661-32913376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 213
               

               Conread position:
               405-857
               

               Cow position:
               chr1:58528425-58528908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               40, 226
               

               Conread position:
               408-641
               

               Cow position:
               chr1:53779972-53780219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               29, 241
               

               Conread position:
               408-930
               

               Cow position:
               chr1:31317318-31316773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               363
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               37, 182
               

               Conread position:
               408-1073
               

               Cow position:
               chr1:91449445-91450125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               695
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 169
               

               Conread position:
               411-728
               

               Cow position:
               chr1:58384396-58384729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               110, 11
               

               Conread position:
               414-729
               

               Cow position:
               chr1:93948502-93948171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 255
               

               Conread position:
               414-922
               

               Cow position:
               chr1:71792092-71792633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               353
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               25, 214
               

               Conread position:
               417-922
               

               Cow position:
               chr1:40964974-40964463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               322
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               111, 28
               

               Conread position:
               419-1042
               

               Cow position:
               chr1:80667383-80668009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               419-1076
               

               Cow position:
               chr1:22789568-22790273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 261
               

               Conread position:
               422-923
               

               Cow position:
               chr1:52434201-52434726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               333
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               47, 26
               

               Conread position:
               427-908
               

               Cow position:
               chr1:85773390-85773895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               320
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               90, 18
               

               Conread position:
               435-922
               

               Cow position:
               chr1:57397123-57396638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               320
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               89, 20
               

               Conread position:
               435-923
               

               Cow position:
               chr1:33899731-33900244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               336
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               43, 10
               

               Conread position:
               439-922
               

               Cow position:
               chr1:50764351-50764836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               314
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               79, 103
               

               Conread position:
               440-1077
               

               Cow position:
               chr1:33537293-33537946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               670
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 7
               

               Conread position:
               441-770
               

               Cow position:
               chr1:76848113-76847785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 39
               

               Conread position:
               441-1073
               

               Cow position:
               chr1:51980182-51980840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               667
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               442-922
               

               Cow position:
               chr1:58197242-58196750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               321
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               192, 87
               

               Conread position:
               443-832
               

               Cow position:
               chr1:32624481-32624886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               249
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               80, 213
               

               Conread position:
               443-1080
               

               Cow position:
               chr1:16973915-16973230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               449
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               80, 137
               

               Conread position:
               444-623
               

               Cow position:
               chr1:40534413-40534231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               73, 119
               

               Conread position:
               444-743
               

               Cow position:
               chr1:62526073-62526369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               85, 25
               

               Conread position:
               444-906
               

               Cow position:
               chr1:98789065-98789530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 63
               

               Conread position:
               444-917
               

               Cow position:
               chr1:34533439-34533940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 222
               

               Conread position:
               444-919
               

               Cow position:
               chr1:100591574-100591073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               327
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               94, 127
               

               Conread position:
               444-923
               

               Cow position:
               chr1:4336961-4337462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               331
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               80, 139
               

               Conread position:
               444-923
               

               Cow position:
               chr1:55159185-55158677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               331
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               90, 222
               

               Conread position:
               444-923
               

               Cow position:
               chr1:76749190-76748690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               94, 218
               

               Conread position:
               444-949
               

               Cow position:
               chr1:27943692-27943160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 133
               

               Conread position:
               444-1068
               

               Cow position:
               chr1:102783736-102784390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               422
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               17, 176
               

               Conread position:
               444-1071
               

               Cow position:
               chr1:70864457-70865115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 106
               

               Conread position:
               444-1080
               

               Cow position:
               chr1:4226193-4226860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 223
               

               Conread position:
               445-740
               

               Cow position:
               chr1:101853901-101853602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               74, 112
               

               Conread position:
               446-923
               

               Cow position:
               chr1:39235303-39234802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 268
               

               Conread position:
               447-883
               

               Cow position:
               chr1:43024604-43025071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               76, 222
               

               Conread position:
               450-911
               

               Cow position:
               chr1:84252616-84252143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               317
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               71, 194
               

               Conread position:
               450-923
               

               Cow position:
               chr1:2989689-2990188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               330
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               450-925
               

               Cow position:
               chr1:26362204-26361724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 69
               

               Conread position:
               450-1078
               

               Cow position:
               chr1:19634993-19635639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               668
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 146
               

               Conread position:
               450-1078
               

               Cow position:
               chr1:31755883-31756552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               682
               

               Alignm identity:
               445
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               10, 87
               

               Conread position:
               451-928
               

               Cow position:
               chr1:89263401-89262899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 29
               

               Conread position:
               452-871
               

               Cow position:
               chr1:79195833-79196260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               281
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               69, 26
               

               Conread position:
               460-922
               

               Cow position:
               chr1:40088589-40089070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               305
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               27, 251
               

               Conread position:
               460-923
               

               Cow position:
               chr1:12375090-12374599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               75, 123
               

               Conread position:
               460-923
               

               Cow position:
               chr1:79334773-79334281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               310
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               74, 206
               

               Conread position:
               460-923
               

               Cow position:
               chr1:95456566-95457056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               326
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               75, 206
               

               Conread position:
               460-942
               

               Cow position:
               chr1:64942322-64941828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               313
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               74, 321
               

               Conread position:
               460-1039
               

               Cow position:
               chr1:19484027-19483413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               402
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               461-1080
               

               Cow position:
               chr1:76304423-76303782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               656
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               462-922
               

               Cow position:
               chr1:17188024-17187536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               320
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               52, 204
               

               Conread position:
               462-922
               

               Cow position:
               chr1:77924697-77925185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               324
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               73, 204
               

               Conread position:
               462-1080
               

               Cow position:
               chr1:24580622-24581261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 82
               

               Conread position:
               463-923
               

               Cow position:
               chr1:18698646-18699135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               320
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               5, 204
               

               Conread position:
               464-923
               

               Cow position:
               chr1:86496507-86496994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               323
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               71, 202
               

               Conread position:
               469-1044
               

               Cow position:
               chr1:39111938-39112551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 7
               

               Conread position:
               472-922
               

               Cow position:
               chr1:16117173-16116695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               305
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               66, 194
               

               Conread position:
               472-1080
               

               Cow position:
               chr1:64717666-64717015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               657
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 194
               

               Conread position:
               476-922
               

               Cow position:
               chr1:87939050-87938579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               62, 200
               

               Conread position:
               481-908
               

               Cow position:
               chr1:93112112-93111675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               297
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               45, 227
               

               Conread position:
               481-923
               

               Cow position:
               chr1:81308596-81309066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               309
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               54, 231
               

               Conread position:
               486-923
               

               Cow position:
               chr1:21453645-21453204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               298
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 87
               

               Conread position:
               500-922
               

               Cow position:
               chr1:5163087-5162642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               307
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               24, 122
               

               Conread position:
               500-922
               

               Cow position:
               chr1:50273598-50273168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               522-732
               

               Cow position:
               chr1:58088156-58087945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               6, 166
               

               Conread position:
               522-925
               

               Cow position:
               chr1:37435730-37435311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 89
               

               Conread position:
               522-1078
               

               Cow position:
               chr1:12885578-12885000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 137
               

               Conread position:
               526-894
               

               Cow position:
               chr1:17208534-17208917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               259
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               63, 162
               

               Conread position:
               528-1067
               

               Cow position:
               chr1:31964785-31964238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 125
               

               Conread position:
               529-819
               

               Cow position:
               chr1:73431082-73430783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               50, 132
               

               Conread position:
               529-908
               

               Cow position:
               chr1:31538250-31537876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               529-1080
               

               Cow position:
               chr1:68950698-68951263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 83
               

               Conread position:
               530-952
               

               Cow position:
               chr1:51313487-51313057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 5
               

               Conread position:
               530-1073
               

               Cow position:
               chr1:76670511-76669944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               536-916
               

               Cow position:
               chr1:58261066-58261433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               139, 48
               

               Conread position:
               540-1080
               

               Cow position:
               chr1:29380611-29380070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               363
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               100, 63
               

               Conread position:
               541-721
               

               Cow position:
               chr1:20307887-20308069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               543-1039
               

               Cow position:
               chr1:44079114-44078606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               329
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               110, 46
               

               Conread position:
               546-874
               

               Cow position:
               chr1:67075223-67074903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               226, 24
               

               Conread position:
               546-1074
               

               Cow position:
               chr1:5013491-5012926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 156
               

               Conread position:
               548-923
               

               Cow position:
               chr1:82567725-82568113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               268
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               9, 53
               

               Conread position:
               550-922
               

               Cow position:
               chr1:61282735-61283123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               90, 140
               

               Conread position:
               550-924
               

               Cow position:
               chr1:4452774-4452381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               550-925
               

               Cow position:
               chr1:22515598-22515988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 27
               

               Conread position:
               550-1080
               

               Cow position:
               chr1:29915486-29916033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 51
               

               Conread position:
               550-1080
               

               Cow position:
               chr1:95766068-95765512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 95
               

               Conread position:
               551-922
               

               Cow position:
               chr1:67289932-67290317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 57
               

               Conread position:
               551-922
               

               Cow position:
               chr1:71690869-71691257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               89, 61
               

               Conread position:
               551-928
               

               Cow position:
               chr1:44083021-44083393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               552-752
               

               Cow position:
               chr1:25780712-25780919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               88, 129
               

               Conread position:
               554-1073
               

               Cow position:
               chr1:60119481-60120037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 109
               

               Conread position:
               556-1080
               

               Cow position:
               chr1:77589142-77589663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 23
               

               Conread position:
               559-918
               

               Cow position:
               chr1:57635933-57636312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               12, 6
               

               Conread position:
               561-923
               

               Cow position:
               chr1:3440286-3440667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               264
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               80, 96
               

               Conread position:
               564-922
               

               Cow position:
               chr1:4515398-4515032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               76, 98
               

               Conread position:
               564-1043
               

               Cow position:
               chr1:4646208-4645713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               327
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               76, 98
               

               Conread position:
               564-1074
               

               Cow position:
               chr1:32563209-32562664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 94
               

               Conread position:
               564-1080
               

               Cow position:
               chr1:23117882-23117329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               365
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               76, 94
               

               Conread position:
               565-923
               

               Cow position:
               chr1:9377043-9376674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               261
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               170, 6
               

               Conread position:
               571-919
               

               Cow position:
               chr1:25801954-25802306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               155, 75
               

               Conread position:
               571-922
               

               Cow position:
               chr1:79646594-79646219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               24, 136
               

               Conread position:
               571-1026
               

               Cow position:
               chr1:84100697-84100225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               313
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               571-1043
               

               Cow position:
               chr1:56231975-56232478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               343
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               50, 135
               

               Conread position:
               572-854
               

               Cow position:
               chr1:22288335-22288615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               70, 13
               

               Conread position:
               572-1073
               

               Cow position:
               chr1:20098435-20098968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               352
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               145, 96
               

               Conread position:
               573-923
               

               Cow position:
               chr1:60308228-60308583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               79, 52
               

               Conread position:
               573-1080
               

               Cow position:
               chr1:55203575-55203019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 114
               

               Conread position:
               574-922
               

               Cow position:
               chr1:81320991-81320623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               66, 84
               

               Conread position:
               575-923
               

               Cow position:
               chr1:92523030-92522664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               59, 83
               

               Conread position:
               576-911
               

               Cow position:
               chr1:40342178-40342519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               23, 72
               

               Conread position:
               576-919
               

               Cow position:
               chr1:66242719-66242364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               64, 29
               

               Conread position:
               577-729
               

               Cow position:
               chr1:80563243-80563398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               577-1077
               

               Cow position:
               chr1:87830589-87831120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               578-907
               

               Cow position:
               chr1:19049925-19049587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               71, 110
               

               Conread position:
               579-1078
               

               Cow position:
               chr1:21404299-21403765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 84
               

               Conread position:
               582-925
               

               Cow position:
               chr1:66654548-66654897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               582-1068
               

               Cow position:
               chr1:73018125-73017609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 12
               

               Conread position:
               583-1080
               

               Cow position:
               chr1:56619602-56619065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               361
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               73, 406
               

               Conread position:
               585-900
               

               Cow position:
               chr1:34392514-34392178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 122
               

               Conread position:
               585-919
               

               Cow position:
               chr1:83136289-83136636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               23, 27
               

               Conread position:
               585-922
               

               Cow position:
               chr1:66369046-66368689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-922
               

               Cow position:
               chr1:71667133-71666770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               55, 112
               

               Conread position:
               585-923
               

               Cow position:
               chr1:3932293-3931935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               51, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:11666194-11665836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:17248316-17247958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:19056220-19056573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:19828632-19828290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               161, 83
               

               Conread position:
               585-923
               

               Cow position:
               chr1:20849184-20848826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:28176103-28176458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               55, 17
               

               Conread position:
               585-923
               

               Cow position:
               chr1:46930607-46930249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:52380791-52381149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:56191072-56190714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               55, 117
               

               Conread position:
               585-923
               

               Cow position:
               chr1:66145047-66145405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:68252676-68253034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               38, 83
               

               Conread position:
               585-923
               

               Cow position:
               chr1:70069064-70068706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:70381064-70380708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               145, 33
               

               Conread position:
               585-923
               

               Cow position:
               chr1:72590017-72589659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:74513796-74513438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:83060294-83059937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               585-923
               

               Cow position:
               chr1:84448972-84449330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               24, 40
               

               Conread position:
               585-923
               

               Cow position:
               chr1:84893909-84894267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:92196323-92196678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               47, 73
               

               Conread position:
               585-923
               

               Cow position:
               chr1:99628730-99628378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               24, 78
               

               Conread position:
               585-923
               

               Cow position:
               chr1:99838004-99837642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-928
               

               Cow position:
               chr1:36235407-36235043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               19, 113
               

               Conread position:
               585-1021
               

               Cow position:
               chr1:30281477-30281004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               325
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               14, 27
               

               Conread position:
               585-1028
               

               Cow position:
               chr1:89767184-89766714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               317
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               49, 73
               

               Conread position:
               585-1068
               

               Cow position:
               chr1:7415832-7416346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 73
               

               Conread position:
               585-1075
               

               Cow position:
               chr1:40061569-40062061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               68, 104
               

               Conread position:
               585-1078
               

               Cow position:
               chr1:53647655-53648157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 83
               

               Conread position:
               588-923
               

               Cow position:
               chr1:42554352-42554700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               24, 72
               

               Conread position:
               588-923
               

               Cow position:
               chr1:62507892-62507540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               20, 24
               

               Conread position:
               588-1068
               

               Cow position:
               chr1:68854305-68854800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               145, 62
               

               Conread position:
               589-909
               

               Cow position:
               chr1:71081492-71081157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               51, 69
               

               Conread position:
               589-923
               

               Cow position:
               chr1:21080089-21079735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               51, 69
               

               Conread position:
               589-928
               

               Cow position:
               chr1:30786175-30785833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               51, 69
               

               Conread position:
               589-1068
               

               Cow position:
               chr1:22253426-22253927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               343
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               51, 68
               

               Conread position:
               590-922
               

               Cow position:
               chr1:52508269-52507918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               63, 98
               

               Conread position:
               590-923
               

               Cow position:
               chr1:72624200-72624555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               50, 68
               

               Conread position:
               590-1073
               

               Cow position:
               chr1:44375955-44376447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 46
               

               Conread position:
               591-928
               

               Cow position:
               chr1:85838203-85838543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               247
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               593-923
               

               Cow position:
               chr1:22730217-22729884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               43, 65
               

               Conread position:
               594-923
               

               Cow position:
               chr1:32361040-32360701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               243
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               596-916
               

               Cow position:
               chr1:1744201-1743870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 61
               

               Conread position:
               597-1080
               

               Cow position:
               chr1:92881494-92880993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               345
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               30, 93
               

               Conread position:
               599-922
               

               Cow position:
               chr1:76700383-76700037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               134, 88
               

               Conread position:
               599-1076
               

               Cow position:
               chr1:2465560-2465060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 58
               

               Conread position:
               603-923
               

               Cow position:
               chr1:17436036-17435697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               603-923
               

               Cow position:
               chr1:72807944-72808284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               37, 55
               

               Conread position:
               603-923
               

               Cow position:
               chr1:77461503-77461835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               130, 34
               

               Conread position:
               603-923
               

               Cow position:
               chr1:81356925-81356589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               125, 47
               

               Conread position:
               604-925
               

               Cow position:
               chr1:18224763-18224433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               35, 25
               

               Conread position:
               606-849
               

               Cow position:
               chr1:87241941-87242194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               606-919
               

               Cow position:
               chr1:30362818-30363147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               64, 81
               

               Conread position:
               606-1077
               

               Cow position:
               chr1:57645797-57646291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               339
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               12, 52
               

               Conread position:
               606-1080
               

               Cow position:
               chr1:12465646-12465152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 55
               
UCSC Genome Browser
               Conread position:
               609-1077
               

               Cow position:
               chr1:90297285-90297778 (view  custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 80
               
UCSC Genome Browser
               
               
               
Conread position: 611-919

               
               
               
Cow position: chr1:38478984-38479312 (view  custom track)

               
               
               
Alignm length: 331

               
               
               
Alignm identity: 223

               
               
               
Alignm E-value: 6e-27

               
               
               
Alignm gaps (pig, cow): 21, 47
UCSC Genome Browser
               
               
               
Conread position: 611-923

               
               
               
Cow position: chr1:39889451-39889781 (view  custom track)

               
               
               
Alignm length: 335

               
               
               
Alignm identity: 227

               
               
               
Alignm E-value: 2e-28

               
               
               
Alignm gaps (pig, cow): 29, 96

               
               
               Conread position:613-903
               
               
               Cow position:chr1:33189490-33189791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:614-1068
               
               
               Cow position:chr1:47923484-47922999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:619-1017
               
               
               Cow position:chr1:21103198-21102802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:620-923
               
               
               Cow position:chr1:1027756-1028072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:620-1080
               
               
               Cow position:chr1:74302730-74302241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:621-923
               
               
               Cow position:chr1:44837135-44836812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:632-1077
               
               
               Cow position:chr1:6335325-6334848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:634-923
               
               
               Cow position:chr1:88297620-88297914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 6

               
               
               Conread position:638-916
               
               
               Cow position:chr1:40863810-40864094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:638-923
               
               
               Cow position:chr1:44229617-44229920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:643-897
               
               
               Cow position:chr1:20119581-20119846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:644-923
               
               
               Cow position:chr1:59018931-59019217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:650-1076
               
               
               Cow position:chr1:96298859-96298404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:322
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:651-908
               
               
               Cow position:chr1:53780573-53780842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:656-1040
               
               
               Cow position:chr1:52818206-52818624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:659-908
               
               
               Cow position:chr1:12899405-12899139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:659-923
               
               
               Cow position:chr1:72806584-72806313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:659-928
               
               
               Cow position:chr1:13133909-13133630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):96, 10

               
               
               Conread position:659-1078
               
               
               Cow position:chr1:99229431-99228998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:668-925
               
               
               Cow position:chr1:80974797-80974524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:669-918
               
               
               Cow position:chr1:24092205-24091947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:669-922
               
               
               Cow position:chr1:10068034-10067763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:669-923
               
               
               Cow position:chr1:52038754-52039022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:672-923
               
               
               Cow position:chr1:4375363-4375099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:672-923
               
               
               Cow position:chr1:40603465-40603729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:672-931
               
               
               Cow position:chr1:54374777-54374505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:672-1077
               
               
               Cow position:chr1:54203658-54204090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:673-928
               
               
               Cow position:chr1:64972848-64973115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:673-1075
               
               
               Cow position:chr1:98872084-98871671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:679-1080
               
               
               Cow position:chr1:86044208-86043798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:682-1080
               
               
               Cow position:chr1:51393621-51394030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:686-925
               
               
               Cow position:chr1:26531718-26531978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:687-918
               
               
               Cow position:chr1:81859990-81859774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:687-1080
               
               
               Cow position:chr1:15333120-15333527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:688-913
               
               
               Cow position:chr1:70534986-70534754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:691-923
               
               
               Cow position:chr1:1023597-1023363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:693-1075
               
               
               Cow position:chr1:92433238-92433636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:697-928
               
               
               Cow position:chr1:21278638-21278403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 202

               
               
               Conread position:700-925
               
               
               Cow position:chr1:2764620-2764836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:701-922
               
               
               Cow position:chr1:68275644-68275866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:703-922
               
               
               Cow position:chr1:81867936-81867707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:709-1077
               
               
               Cow position:chr1:66363310-66363671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:716-1076
               
               
               Cow position:chr1:95223406-95223032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:717-922
               
               
               Cow position:chr1:38278924-38278714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:717-925
               
               
               Cow position:chr1:88266564-88266353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:718-924
               
               
               Cow position:chr1:7658026-7657820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:718-925
               
               
               Cow position:chr1:37555926-37556131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:721-1077
               
               
               Cow position:chr1:57908490-57908850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):155, 17

               
               
               Conread position:724-1080
               
               
               Cow position:chr1:99210294-99209908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:725-1025
               
               
               Cow position:chr1:73933370-73933674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:725-1080
               
               
               Cow position:chr1:20522437-20522059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):52, 278

               
               
               Conread position:728-886
               
               
               Cow position:chr1:80967574-80967736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:728-925
               
               
               Cow position:chr1:41464369-41464565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:728-1066
               
               
               Cow position:chr1:86984355-86984021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:731-922
               
               
               Cow position:chr1:21577066-21577256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:731-925
               
               
               Cow position:chr1:86326122-86325929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:731-1032
               
               
               Cow position:chr1:89834364-89834677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):194, 11

               
               
               Conread position:732-923
               
               
               Cow position:chr1:60280037-60280237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:732-924
               
               
               Cow position:chr1:89415185-89415378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:735-919
               
               
               Cow position:chr1:38382663-38382481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:735-923
               
               
               Cow position:chr1:65393757-65393955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:735-1059
               
               
               Cow position:chr1:44137178-44136845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:735-1072
               
               
               Cow position:chr1:56407841-56408183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:735-1077
               
               
               Cow position:chr1:60085862-60086226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:735-1080
               
               
               Cow position:chr1:29901733-29901366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:735-1080
               
               
               Cow position:chr1:44769850-44769494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 229

               
               
               Conread position:735-1080
               
               
               Cow position:chr1:73756366-73756711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 183

               
               
               Conread position:738-1068
               
               
               Cow position:chr1:57421873-57421524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 156

               
               
               Conread position:741-1074
               
               
               Cow position:chr1:39468661-39468311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:744-925
               
               
               Cow position:chr1:89840533-89840718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:744-1068
               
               
               Cow position:chr1:7582993-7583332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:744-1074
               
               
               Cow position:chr1:21523298-21523622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:744-1077
               
               
               Cow position:chr1:41736345-41735996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:744-1080
               
               
               Cow position:chr1:86001414-86001074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:747-923
               
               
               Cow position:chr1:52068039-52068217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:747-924
               
               
               Cow position:chr1:92009128-92009312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:750-1078
               
               
               Cow position:chr1:62141114-62140782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:751-928
               
               
               Cow position:chr1:91594024-91593845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:759-927
               
               
               Cow position:chr1:3036367-3036536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:761-1043
               
               
               Cow position:chr1:100759365-100759668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 210

               
               
               Conread position:762-923
               
               
               Cow position:chr1:84284245-84284408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:763-927
               
               
               Cow position:chr1:79358970-79358809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:766-908
               
               
               Cow position:chr1:7837210-7837067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:766-925
               
               
               Cow position:chr1:30041014-30041175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:766-925
               
               
               Cow position:chr1:63454626-63454468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:766-1080
               
               
               Cow position:chr1:53613908-53613587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:766-1080
               
               
               Cow position:chr1:79279272-79278938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):6, 205

               
               
               Conread position:768-1044
               
               
               Cow position:chr1:71714048-71714343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 201

               
               
               Conread position:770-924
               
               
               Cow position:chr1:33987255-33987101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:770-1045
               
               
               Cow position:chr1:72069535-72069245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:771-908
               
               
               Cow position:chr1:102290301-102290163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-919
               
               
               Cow position:chr1:34858144-34857999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:771-919
               
               
               Cow position:chr1:37541609-37541462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:771-919
               
               
               Cow position:chr1:72104435-72104589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:771-922
               
               
               Cow position:chr1:10071556-10071404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-922
               
               
               Cow position:chr1:24910026-24909877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:771-922
               
               
               Cow position:chr1:37661033-37661184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 109

               
               
               Conread position:771-922
               
               
               Cow position:chr1:57096349-57096501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-922
               
               
               Cow position:chr1:57304861-57305013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-922
               
               
               Cow position:chr1:60554783-60554632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 104

               
               
               Conread position:771-922
               
               
               Cow position:chr1:69963758-69963606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:771-922
               
               
               Cow position:chr1:76020389-76020237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-922
               
               
               Cow position:chr1:77619837-77619989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-923
               
               
               Cow position:chr1:46885382-46885535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-923
               
               
               Cow position:chr1:51444809-51444962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-923
               
               
               Cow position:chr1:62531015-62531167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:771-955
               
               
               Cow position:chr1:95229856-95229671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:771-1022
               
               
               Cow position:chr1:29656769-29657025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:771-1028
               
               
               Cow position:chr1:79114174-79114423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:771-1030
               
               
               Cow position:chr1:78073718-78073448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:771-1063
               
               
               Cow position:chr1:43650353-43650049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 192

               
               
               Conread position:771-1071
               
               
               Cow position:chr1:56718615-56718926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 106

               
               
               Conread position:771-1073
               
               
               Cow position:chr1:14650403-14650092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:771-1073
               
               
               Cow position:chr1:20798376-20798693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 21

               
               
               Conread position:771-1073
               
               
               Cow position:chr1:68783358-68783046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:771-1074
               
               
               Cow position:chr1:40310311-40310624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:771-1074
               
               
               Cow position:chr1:72462445-72462752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 130

               
               
               Conread position:771-1074
               
               
               Cow position:chr1:94464662-94464985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:771-1077
               
               
               Cow position:chr1:71332522-71332206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):92, 72

               
               
               Conread position:771-1077
               
               
               Cow position:chr1:73702781-73702462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 247

               
               
               Conread position:771-1079
               
               
               Cow position:chr1:9783784-9784110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 266

               
               
               Conread position:771-1080
               
               
               Cow position:chr1:3340224-3340545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):148, 72

               
               
               Conread position:771-1080
               
               
               Cow position:chr1:4906005-4906306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:771-1080
               
               
               Cow position:chr1:31190807-31190483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 291

               
               
               Conread position:771-1080
               
               
               Cow position:chr1:85361151-85361475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 194

               
               
               Conread position:775-909
               
               
               Cow position:chr1:88308168-88308034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:775-919
               
               
               Cow position:chr1:57660156-57660298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-922
               
               
               Cow position:chr1:2070532-2070384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:775-922
               
               
               Cow position:chr1:86451147-86450999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-923
               
               
               Cow position:chr1:48600668-48600817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:775-1025
               
               
               Cow position:chr1:52775644-52775372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-1068
               
               
               Cow position:chr1:47635110-47634834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 105

               
               
               Conread position:775-1078
               
               
               Cow position:chr1:98612502-98612825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):111, 289

               
               
               Conread position:776-905
               
               
               Cow position:chr1:40509689-40509559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-919
               
               
               Cow position:chr1:40532020-40531877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:776-923
               
               
               Cow position:chr1:8345850-8345702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-923
               
               
               Cow position:chr1:29128965-29129113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-923
               
               
               Cow position:chr1:57577344-57577196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-923
               
               
               Cow position:chr1:62530227-62530079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-923
               
               
               Cow position:chr1:65480510-65480657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:776-923
               
               
               Cow position:chr1:67717776-67717628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-923
               
               
               Cow position:chr1:74086254-74086106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-925
               
               
               Cow position:chr1:37309326-37309177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 54

               
               
               Conread position:776-1032
               
               
               Cow position:chr1:98620002-98620270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:777-931
               
               
               Cow position:chr1:1040267-1040422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 90

               
               
               Conread position:778-908
               
               
               Cow position:chr1:48036251-48036120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-911
               
               
               Cow position:chr1:51918130-51917996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:778-919
               
               
               Cow position:chr1:9526125-9526267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-922
               
               
               Cow position:chr1:85152063-85152204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:778-923
               
               
               Cow position:chr1:1383314-1383168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:6900705-6900851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:8744938-8744792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:9309049-9309195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:11199057-11198911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:12035323-12035469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:13404826-13404680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:15418277-15418131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:21421099-21420953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:21994323-21994177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:26585780-26585926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:28770345-28770199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:33040377-33040523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:33364570-33364716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:33656403-33656549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:36008126-36008272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:40351414-40351560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:43225430-43225284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:43972771-43972917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:44557106-44556960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:44819246-44819100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:48735493-48735639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:52941564-52941710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:52979224-52979370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:53563998-53564144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:56720942-56720796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:58172451-58172594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:59626219-59626362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:778-923
               
               
               Cow position:chr1:60342533-60342679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:61281569-61281715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:61493358-61493504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:62597664-62597518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:62711631-62711485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:67188863-67188720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:71124080-71123934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:72963536-72963390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:75826082-75826228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:76486248-76486102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:78235128-78234982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:78557986-78558132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:81779227-81779373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:85578299-85578153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:86372479-86372333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:86597111-86597256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:778-923
               
               
               Cow position:chr1:89792997-89792851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:95593167-95593021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-923
               
               
               Cow position:chr1:97205914-97206060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-925
               
               
               Cow position:chr1:3668552-3668406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:778-927
               
               
               Cow position:chr1:97535475-97535624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:778-928
               
               
               Cow position:chr1:90309146-90308996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:778-1065
               
               
               Cow position:chr1:24236218-24235912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 193

               
               
               Conread position:778-1068
               
               
               Cow position:chr1:12608192-12607882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 288

               
               
               Conread position:778-1068
               
               
               Cow position:chr1:30311988-30312296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):81, 287

               
               
               Conread position:778-1068
               
               
               Cow position:chr1:52378531-52378841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 289

               
               
               Conread position:778-1068
               
               
               Cow position:chr1:68481128-68480819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 288

               
               
               Conread position:778-1068
               
               
               Cow position:chr1:94879522-94879214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):81, 286

               
               
               Conread position:778-1080
               
               
               Cow position:chr1:24562194-24561872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:778-1080
               
               
               Cow position:chr1:24571578-24571257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:778-1080
               
               
               Cow position:chr1:42176491-42176184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:779-919
               
               
               Cow position:chr1:79357194-79357054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:779-1078
               
               
               Cow position:chr1:81000510-81000210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:780-1077
               
               
               Cow position:chr1:91052339-91052027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:781-923
               
               
               Cow position:chr1:12746351-12746210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:781-923
               
               
               Cow position:chr1:42174875-42175018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:781-924
               
               
               Cow position:chr1:49132677-49132532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:781-1043
               
               
               Cow position:chr1:88677031-88677311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:781-1043
               
               
               Cow position:chr1:90605279-90604999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 186

               
               
               Conread position:781-1064
               
               
               Cow position:chr1:92962706-92962988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:781-1068
               
               
               Cow position:chr1:12282923-12283226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 185

               
               
               Conread position:781-1068
               
               
               Cow position:chr1:43448458-43448166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 175

               
               
               Conread position:781-1073
               
               
               Cow position:chr1:22629323-22629019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:781-1073
               
               
               Cow position:chr1:89342675-89342375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:781-1078
               
               
               Cow position:chr1:25781108-25781406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 211

               
               
               Conread position:782-923
               
               
               Cow position:chr1:10936846-10936988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:784-1078
               
               
               Cow position:chr1:17690369-17690668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:785-928
               
               
               Cow position:chr1:16297761-16297904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:785-1071
               
               
               Cow position:chr1:97525125-97524822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 184

               
               
               Conread position:786-919
               
               
               Cow position:chr1:12223347-12223217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:786-923
               
               
               Cow position:chr1:10624258-10624396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:786-923
               
               
               Cow position:chr1:79843776-79843914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:786-1068
               
               
               Cow position:chr1:31708174-31708474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 182

               
               
               Conread position:786-1074
               
               
               Cow position:chr1:20146990-20147293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 275

               
               
               Conread position:789-923
               
               
               Cow position:chr1:54477371-54477506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:789-1077
               
               
               Cow position:chr1:35155174-35154899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:790-923
               
               
               Cow position:chr1:19776095-19776229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:792-1074
               
               
               Cow position:chr1:51982931-51983213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 146

               
               
               Conread position:797-923
               
               
               Cow position:chr1:99105571-99105444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:797-924
               
               
               Cow position:chr1:67974600-67974472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:797-1068
               
               
               Cow position:chr1:2751999-2752266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 136

               
               
               Conread position:797-1080
               
               
               Cow position:chr1:75444107-75443811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:798-923
               
               
               Cow position:chr1:50687302-50687428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:799-930
               
               
               Cow position:chr1:43436413-43436284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:799-1039
               
               
               Cow position:chr1:85829771-85830024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:799-1075
               
               
               Cow position:chr1:1349244-1348948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 268

               
               
               Conread position:800-923
               
               
               Cow position:chr1:13451369-13451493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:800-1064
               
               
               Cow position:chr1:80901900-80901630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:800-1067
               
               
               Cow position:chr1:59167127-59166855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:801-923
               
               
               Cow position:chr1:56620213-56620090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:801-1077
               
               
               Cow position:chr1:52037111-52036835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:805-1080
               
               
               Cow position:chr1:55135089-55135383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 70

               
               
               Conread position:806-923
               
               
               Cow position:chr1:77840871-77840989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:807-1074
               
               
               Cow position:chr1:3382324-3382040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:807-1080
               
               
               Cow position:chr1:99792128-99792409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:808-923
               
               
               Cow position:chr1:42714252-42714136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:811-923
               
               
               Cow position:chr1:35147949-35147836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:811-1016
               
               
               Cow position:chr1:93495517-93495719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:811-1073
               
               
               Cow position:chr1:68827640-68827365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 249

               
               
               Conread position:811-1074
               
               
               Cow position:chr1:91799645-91799371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):48, 152

               
               
               Conread position:811-1080
               
               
               Cow position:chr1:84786491-84786205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:814-1059
               
               
               Cow position:chr1:96193555-96193297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:816-1073
               
               
               Cow position:chr1:42317030-42316755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 249

               
               
               Conread position:816-1080
               
               
               Cow position:chr1:76223351-76223071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 149

               
               
               Conread position:817-923
               
               
               Cow position:chr1:37110479-37110372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:822-1080
               
               
               Cow position:chr1:53458051-53458326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:824-923
               
               
               Cow position:chr1:34400843-34400943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:824-923
               
               
               Cow position:chr1:64613311-64613411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:824-923
               
               
               Cow position:chr1:70532688-70532788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:824-1068
               
               
               Cow position:chr1:33909969-33910233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):35, 242

               
               
               Conread position:824-1080
               
               
               Cow position:chr1:41696406-41696681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:824-1080
               
               
               Cow position:chr1:96135856-96136122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):35, 233

               
               
               Conread position:825-923
               
               
               Cow position:chr1:28340500-28340599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:826-921
               
               
               Cow position:chr1:31715013-31715110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:826-1076
               
               
               Cow position:chr1:99211168-99210917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:826-1080
               
               
               Cow position:chr1:37646913-37646653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:829-1080
               
               
               Cow position:chr1:56669709-56669435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 241

               
               
               Conread position:839-1078
               
               
               Cow position:chr1:3062367-3062112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 224

               
               
               Conread position:840-1074
               
               
               Cow position:chr1:61070380-61070627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 219

               
               
               Conread position:844-1068
               
               
               Cow position:chr1:55586228-55585995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:844-1080
               
               
               Cow position:chr1:32630376-32630621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:847-1074
               
               
               Cow position:chr1:91888611-91888373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:848-1023
               
               
               Cow position:chr1:17477521-17477713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:850-1072
               
               
               Cow position:chr1:86505259-86505029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:854-1080
               
               
               Cow position:chr1:65145082-65144857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):179, 94

               
               
               Conread position:869-1077
               
               
               Cow position:chr1:23191084-23191294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:882-1059
               
               
               Cow position:chr1:99224339-99224153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:903-1035
               
               
               Cow position:chr1:98073667-98073799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:903-1079
               
               
               Cow position:chr1:27965901-27966075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:917-1072
               
               
               Cow position:chr1:83080833-83080986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:917-1080
               
               
               Cow position:chr1:1403991-1403830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:917-1080
               
               
               Cow position:chr1:57969620-57969457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:919-1068
               
               
               Cow position:chr1:21538924-21539072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:919-1080
               
               
               Cow position:chr1:44126835-44126677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:920-1066
               
               
               Cow position:chr1:30098651-30098507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:920-1076
               
               
               Cow position:chr1:40479891-40479740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:921-1080
               
               
               Cow position:chr1:68253055-68253211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:922-1077
               
               
               Cow position:chr1:23932136-23931981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:922-1080
               
               
               Cow position:chr1:52564315-52564158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:923-1072
               
               
               Cow position:chr1:5771235-5771089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:923-1074
               
               
               Cow position:chr1:23670067-23669918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:923-1075
               
               
               Cow position:chr1:79419600-79419450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 28

               
               
               Conread position:923-1077
               
               
               Cow position:chr1:13133423-13133272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:923-1078
               
               
               Cow position:chr1:80655398-80655549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:923-1079
               
               
               Cow position:chr1:18224415-18224260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:19465525-19465680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:34397337-34397180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:40530766-40530613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:46885555-46885712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:84602790-84602633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 126

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:95229682-95229530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:923-1080
               
               
               Cow position:chr1:97100864-97100708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:925-1064
               
               
               Cow position:chr1:12596443-12596300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:925-1073
               
               
               Cow position:chr1:25856129-25856276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:925-1078
               
               
               Cow position:chr1:3234311-3234160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:926-1043
               
               
               Cow position:chr1:82861254-82861370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:926-1044
               
               
               Cow position:chr1:43353182-43353064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:926-1044
               
               
               Cow position:chr1:88028540-88028658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:926-1045
               
               
               Cow position:chr1:49132510-49132391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:926-1045
               
               
               Cow position:chr1:61535065-61534947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1059
               
               
               Cow position:chr1:7686170-7686038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:926-1059
               
               
               Cow position:chr1:92196701-92196833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1062
               
               
               Cow position:chr1:24440335-24440197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:926-1064
               
               
               Cow position:chr1:42714113-42713976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1064
               
               
               Cow position:chr1:66145428-66145565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1065
               
               
               Cow position:chr1:44094987-44094849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:2990211-2990352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:3931912-3931771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:7867500-7867641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:8345679-8345538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:9309218-9309359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:13298262-13298403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:17450700-17450559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:18535192-18535051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:20848803-20848662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:21420930-21420789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:22483875-22483734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:26721600-26721459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:27494965-27495106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:33464544-33464403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:37332803-37332662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:39160944-39160803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:40121968-40122109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:40351583-40351724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:40436522-40436663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:40766478-40766620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:44819077-44818936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:46122158-46122017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:47078454-47078313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:48345896-48346037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:50687451-50687592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:51365834-51365975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:52068240-52068382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 121

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:52754807-52754666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:53564167-53564308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:55292915-55292774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:56666828-56666969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:61493527-61493668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:63046609-63046750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:68097428-68097287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:69503646-69503505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:70532811-70532952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:70897471-70897612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:71123911-71123770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:72808307-72808448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:74513415-74513274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:74948376-74948238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:76486079-76485938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:78558155-78558296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:79554222-79554363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:79632827-79632686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:86372310-86372169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:86497017-86497158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:92370894-92370753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1068
               
               
               Cow position:chr1:93526878-93527019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:475606-475750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:26811347-26811203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:48735662-48735806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:52381172-52381316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:65480680-65480824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:76207787-76207643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:81913783-81913640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:85358604-85358749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:926-1071
               
               
               Cow position:chr1:100421312-100421456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:926-1072
               
               
               Cow position:chr1:21430577-21430434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:926-1072
               
               
               Cow position:chr1:47791346-47791202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:926-1072
               
               
               Cow position:chr1:86114227-86114372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:21835252-21835401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:26617697-26617841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:39249500-39249354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:52507894-52507749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:54199912-54199767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:60554407-60554261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1073
               
               
               Cow position:chr1:68845988-68845842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:9593687-9593540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:12057526-12057380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:21376835-21376688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:21994154-21994007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:29429332-29429479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:39100506-39100653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:50670542-50670690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:52371881-52372028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:63602060-63601913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:64480744-64480599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:65390289-65390436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:65943492-65943346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:66491305-66491451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:72987183-72987330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:74939671-74939819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:76748667-76748520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:80063019-80063165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:82162464-82162316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:88297937-88298084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1074
               
               
               Cow position:chr1:89084135-89084282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:926-1075
               
               
               Cow position:chr1:53397451-53397599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:31814893-31815042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:32108550-32108701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:40603752-40603903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:66654918-66655067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:70053144-70053294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:77762110-77762262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1077
               
               
               Cow position:chr1:86450973-86450823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1078
               
               
               Cow position:chr1:52753708-52753552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1078
               
               
               Cow position:chr1:64609616-64609465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:926-1079
               
               
               Cow position:chr1:92009334-92009485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:3739467-3739621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:4619755-4619910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:11728653-11728807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:11854223-11854070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:20002789-20002636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:21092560-21092712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:24446257-24446106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:30034018-30034171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:33716689-33716841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:33987079-33986926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:37310049-37309896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:38382413-38382260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:42053856-42053703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:46940159-46940312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:47653842-47653689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:50764860-50765013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:54207355-54207200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:54732972-54732823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:55146007-55146160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:55429515-55429363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:56634339-56634492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:57087780-57087627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:57640034-57639881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:59019240-59019394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:61006091-61005940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:61747692-61747539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:62507517-62507363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:64973133-64973284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:66242338-66242190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:67406110-67406263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:69289888-69290044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:69963582-69963429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:71691281-71691434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:73197137-73196981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:73522667-73522522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:76020212-76020060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:77461858-77462011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:79590565-79590720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:79843937-79844089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:82338347-82338197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:82378257-82378410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:85866535-85866688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:95050680-95050527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:95071173-95071326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:100450724-100450572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:926-1080
               
               
               Cow position:chr1:100537108-100537261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:927-1033
               
               
               Cow position:chr1:65659260-65659365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:927-1043
               
               
               Cow position:chr1:12871556-12871439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:927-1044
               
               
               Cow position:chr1:54477530-54477647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:927-1045
               
               
               Cow position:chr1:30305352-30305235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:927-1068
               
               
               Cow position:chr1:63583385-63583245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1071
               
               
               Cow position:chr1:1743833-1743690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:927-1072
               
               
               Cow position:chr1:4239051-4239196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:927-1072
               
               
               Cow position:chr1:47543257-47543114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:927-1073
               
               
               Cow position:chr1:63454446-63454301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1074
               
               
               Cow position:chr1:25178276-25178130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:927-1074
               
               
               Cow position:chr1:51376474-51376328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:927-1074
               
               
               Cow position:chr1:76419584-76419730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:927-1075
               
               
               Cow position:chr1:96184539-96184393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:927-1076
               
               
               Cow position:chr1:76208294-76208144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:927-1077
               
               
               Cow position:chr1:32624967-32625116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1077
               
               
               Cow position:chr1:57854882-57854733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:927-1077
               
               
               Cow position:chr1:70534500-70534351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1077
               
               
               Cow position:chr1:90233389-90233540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:927-1077
               
               
               Cow position:chr1:93111187-93111041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:927-1078
               
               
               Cow position:chr1:22480775-22480625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:927-1078
               
               
               Cow position:chr1:44824727-44824880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:927-1078
               
               
               Cow position:chr1:67974299-67974156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:927-1078
               
               
               Cow position:chr1:93413131-93412981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1079
               
               
               Cow position:chr1:53370328-53370479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:927-1079
               
               
               Cow position:chr1:99690624-99690774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:6795481-6795329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:12677946-12678094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:20866868-20866722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:22388769-22388617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:22516010-22516164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:28678753-28678903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:36234877-36234724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:50931837-50931685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:51844195-51844043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:72997697-72997849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:85142486-85142335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:927-1080
               
               
               Cow position:chr1:85865266-85865418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:928-1071
               
               
               Cow position:chr1:60033133-60032991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:928-1071
               
               
               Cow position:chr1:89344380-89344521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:928-1073
               
               
               Cow position:chr1:72812885-72813029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:928-1073
               
               
               Cow position:chr1:80184270-80184127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:928-1074
               
               
               Cow position:chr1:57571562-57571707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:928-1077
               
               
               Cow position:chr1:9111545-9111392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:928-1080
               
               
               Cow position:chr1:76700012-76699862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:929-1078
               
               
               Cow position:chr1:7201979-7202128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:929-1078
               
               
               Cow position:chr1:62776246-62776395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:929-1080
               
               
               Cow position:chr1:3557035-3556885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:929-1080
               
               
               Cow position:chr1:67821747-67821597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:930-1043
               
               
               Cow position:chr1:4515004-4514891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:930-1073
               
               
               Cow position:chr1:19517701-19517559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:930-1079
               
               
               Cow position:chr1:6290423-6290571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:930-1080
               
               
               Cow position:chr1:57120102-57119951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 21

               
               
               Conread position:930-1080
               
               
               Cow position:chr1:72284824-72284679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:931-1073
               
               
               Cow position:chr1:85163359-85163219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:931-1078
               
               
               Cow position:chr1:61679709-61679563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:931-1080
               
               
               Cow position:chr1:18415078-18414931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:931-1080
               
               
               Cow position:chr1:71819033-71818887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:932-1074
               
               
               Cow position:chr1:22229571-22229712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:932-1080
               
               
               Cow position:chr1:31771087-31771230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:932-1080
               
               
               Cow position:chr1:33081591-33081443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:933-1080
               
               
               Cow position:chr1:22728522-22728669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:933-1080
               
               
               Cow position:chr1:49830832-49830977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:933-1080
               
               
               Cow position:chr1:79165863-79165719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:936-1072
               
               
               Cow position:chr1:99105411-99105276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:936-1073
               
               
               Cow position:chr1:70933881-70933747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:936-1077
               
               
               Cow position:chr1:58218835-58218974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:936-1080
               
               
               Cow position:chr1:52955697-52955840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:936-1080
               
               
               Cow position:chr1:98789588-98789731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:937-1072
               
               
               Cow position:chr1:17292179-17292046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:937-1073
               
               
               Cow position:chr1:27943754-27943895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:937-1080
               
               
               Cow position:chr1:84240383-84240526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:938-1068
               
               
               Cow position:chr1:67318681-67318812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:938-1080
               
               
               Cow position:chr1:79255732-79255873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:940-1064
               
               
               Cow position:chr1:80160554-80160678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:940-1080
               
               
               Cow position:chr1:3963102-3963241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:940-1080
               
               
               Cow position:chr1:95176416-95176555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:945-1080
               
               
               Cow position:chr1:89510671-89510535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:952-1080
               
               
               Cow position:chr1:1825281-1825410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:957-1056
               
               
               Cow position:chr1:45289370-45289272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:957-1068
               
               
               Cow position:chr1:24133836-24133725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:957-1074
               
               
               Cow position:chr1:61150016-61149895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:957-1079
               
               
               Cow position:chr1:2994555-2994676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:957-1080
               
               
               Cow position:chr1:71748545-71748422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:959-1072
               
               
               Cow position:chr1:12419966-12419853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:959-1080
               
               
               Cow position:chr1:78184206-78184327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:964-1080
               
               
               Cow position:chr1:44083570-44083686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:970-1079
               
               
               Cow position:chr1:89547718-89547827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 76

               
               
               Conread position:972-1080
               
               
               Cow position:chr1:10064549-10064441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 76
Show alignments to all cow chromosomes.
Conread position:	1-1073
Cow position:	chr1:79913629-79914772 (view UCSC Genome Browser custom track)
Alignm length:	1162
Alignm identity:	775
Alignm E-value:	0
Alignm gaps (pig, cow):	28, 103
Conread position:	5-756
Cow position:	chr1:51876078-51875302 (view UCSC Genome Browser custom track)
Alignm length:	797
Alignm identity:	519
Alignm E-value:	0
Alignm gaps (pig, cow):	113, 43
Conread position:	132-348
Cow position:	chr1:32912503-32912724 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	157
Alignm E-value:	6e-27
Alignm gaps (pig, cow):	49, 189
Conread position:	132-389
Cow position:	chr1:20378513-20378784 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	184
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	42, 186
Conread position:	132-434
Cow position:	chr1:33899110-33899438 (view UCSC Genome Browser custom track)
Alignm length:	329
Alignm identity:	217
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	38, 0
Conread position:	132-525
Cow position:	chr1:31363254-31362834 (view UCSC Genome Browser custom track)
Alignm length:	428
Alignm identity:	283
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	38, 103
Conread position:	132-606
Cow position:	chr1:38410059-38410543 (view UCSC Genome Browser custom track)
Alignm length:	496
Alignm identity:	331
Alignm E-value:	0
Alignm gaps (pig, cow):	49, 17
Conread position:	132-685
Cow position:	chr1:8556529-8557135 (view UCSC Genome Browser custom track)
Alignm length:	609
Alignm identity:	390
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	38, 455
Conread position:	132-723
Cow position:	chr1:81301961-81302600 (view UCSC Genome Browser custom track)
Alignm length:	643
Alignm identity:	411
Alignm E-value:	7e-38
Alignm gaps (pig, cow):	49, 180
Conread position:	132-729
Cow position:	chr1:11324358-11324981 (view UCSC Genome Browser custom track)
Alignm length:	640
Alignm identity:	419
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	49, 107
Conread position:	132-774
Cow position:	chr1:31415380-31414696 (view UCSC Genome Browser custom track)
Alignm length:	692
Alignm identity:	437
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	50, 601
Conread position:	132-857
Cow position:	chr1:62927312-62928107 (view UCSC Genome Browser custom track)
Alignm length:	798
Alignm identity:	500
Alignm E-value:	5e-35
Alignm gaps (pig, cow):	38, 465
Conread position:	132-897
Cow position:	chr1:89111676-89112494 (view UCSC Genome Browser custom track)
Alignm length:	829
Alignm identity:	533
Alignm E-value:	0
Alignm gaps (pig, cow):	41, 170
Conread position:	132-903
Cow position:	chr1:7199959-7200786 (view UCSC Genome Browser custom track)
Alignm length:	840
Alignm identity:	559
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 30
Conread position:	132-907
Cow position:	chr1:99916280-99917128 (view UCSC Genome Browser custom track)
Alignm length:	851
Alignm identity:	546
Alignm E-value:	0
Alignm gaps (pig, cow):	38, 189
Conread position:	132-919
Cow position:	chr1:21431456-21430611 (view UCSC Genome Browser custom track)
Alignm length:	855
Alignm identity:	562
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 158
Conread position:	132-922
Cow position:	chr1:18024953-18024116 (view UCSC Genome Browser custom track)
Alignm length:	847
Alignm identity:	538
Alignm E-value:	0
Alignm gaps (pig, cow):	38, 171
Conread position:	132-923
Cow position:	chr1:6197432-6196575 (view UCSC Genome Browser custom track)
Alignm length:	863
Alignm identity:	546
Alignm E-value:	0
Alignm gaps (pig, cow):	49, 136
Conread position:	132-927
Cow position:	chr1:28676925-28677754 (view UCSC Genome Browser custom track)
Alignm length:	848
Alignm identity:	557
Alignm E-value:	0
Alignm gaps (pig, cow):	49, 126
Conread position:	132-1043
Cow position:	chr1:56424755-56425757 (view UCSC Genome Browser custom track)
Alignm length:	1005
Alignm identity:	644
Alignm E-value:	0
Alignm gaps (pig, cow):	54, 575