Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8013F15.5 |
| Conread position: | 5-165 |
| Cow position: | chr29:31998069-31997910 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 5-693 |
| Cow position: | chr29:31991405-31990726 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 45 |
| Conread position: | 8-321 |
| Cow position: | chr29:31991999-31991686 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 282 |
| Conread position: | 8-333 |
| Cow position: | chr29:31988663-31988338 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-333 |
| Cow position: | chr29:31990643-31990318 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-333 |
| Cow position: | chr29:31994364-31994038 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 8-693 |
| Cow position: | chr29:31989815-31989130 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-693 |
| Cow position: | chr29:31992767-31992082 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 499 |
| Conread position: | 8-693 |
| Cow position: | chr29:31993151-31992466 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 499 |
| Conread position: | 12-286 |
| Cow position: | chr29:31987267-31986993 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-321 |
| Cow position: | chr29:31996904-31996595 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 278 |
| Conread position: | 12-325 |
| Cow position: | chr29:31997510-31997197 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-653 |
| Cow position: | chr29:31987651-31987010 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 581, 594 |
| Conread position: | 12-693 |
| Cow position: | chr29:31993531-31992850 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-693 |
| Cow position: | chr29:31995128-31994447 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-693 |
| Cow position: | chr29:31995512-31994831 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-693 |
| Cow position: | chr29:31995896-31995215 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-694 |
| Cow position: | chr29:31989043-31988361 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-694 |
| Cow position: | chr29:31992379-31991698 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 662, 0 |
| Conread position: | 12-694 |
| Cow position: | chr29:31994744-31994061 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 14-267 |
| Cow position: | chr29:31999170-31998917 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-651 |
| Cow position: | chr29:31998807-31998170 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-693 |
| Cow position: | chr29:31989425-31988746 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-248 |
| Cow position: | chr29:31988432-31988201 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-321 |
| Cow position: | chr29:31990412-31990108 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-321 |
| Cow position: | chr29:31994132-31993828 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-693 |
| Cow position: | chr29:31990191-31989514 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 491 |
| Conread position: | 17-693 |
| Cow position: | chr29:31993911-31993234 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 491 |
| Conread position: | 17-693 |
| Cow position: | chr29:31996275-31995599 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-693 |
| Cow position: | chr29:31996677-31995983 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 361 |
| Conread position: | 17-694 |
| Cow position: | chr29:31991018-31990341 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 18-693 |
| Cow position: | chr29:31991768-31991110 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 267 |
| Conread position: | 24-321 |
| Cow position: | chr29:31988245-31987948 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-693 |
| Cow position: | chr29:31988018-31987354 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-693 |
| Cow position: | chr29:31997852-31997213 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-695 |
| Cow position: | chr29:31997246-31996606 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 632, 0 |
| Conread position: | 55-258 |
| Cow position: | chr29:31999720-31999517 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 53 |
| Conread position: | 67-651 |
| Cow position: | chr29:31999502-31998917 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 546 |
| Conread position: | 236-550 |
| Cow position: | chr29:31998222-31997909 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 236-693 |
| Cow position: | chr29:31998969-31998512 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 271 |
| Conread position: | 239-648 |
| Cow position: | chr29:31999920-31999511 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 114, 128 |
| Conread position: | 240-693 |
| Cow position: | chr29:31998057-31997597 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 380-693 |
| Cow position: | chr29:31988053-31987738 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 384-693 |
| Cow position: | chr29:31990207-31989898 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-693 |
| Cow position: | chr29:31993927-31993618 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-693 |
| Cow position: | chr29:31997295-31996991 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-615 |
| Cow position: | chr29:31996688-31996463 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 209, 221 |
| Conread position: | 390-640 |
| Cow position: | chr29:31991779-31991529 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-694 |
| Cow position: | chr29:31990423-31990119 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-694 |
| Cow position: | chr29:31994143-31993839 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 392-648 |
| Cow position: | chr29:31988441-31988185 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 425-693 |
| Cow position: | chr29:31988228-31987960 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 508-693 |
| Cow position: | chr29:31999444-31999259 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.