Cow genome map

Conread name: Ss1.1-Pig3-SRG8016N24.5

Conread position: 446-628
Cow position: chr27:16292593-16292402 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 453-585
Cow position: chr27:13375859-13375990 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 57

Conread position: 469-647
Cow position: chr27:20247647-20247839 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 41

Conread position: 469-653
Cow position: chr27:28270990-28271188 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 477-643
Cow position: chr27:732720-732544 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 142

Conread position: 478-599
Cow position: chr27:2930449-2930574 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 478-647
Cow position: chr27:23882226-23882406 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 78

Conread position: 479-585
Cow position: chr27:26427982-26428094 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 84

Conread position: 480-585
Cow position: chr27:28008911-28009022 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 480-598
Cow position: chr27:2011957-2012078 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 480-599
Cow position: chr27:18030911-18031038 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 480-599
Cow position: chr27:29831541-29831665 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 480-605
Cow position: chr27:21393359-21393488 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 480-611
Cow position: chr27:7731103-7731244 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 480-615
Cow position: chr27:6500210-6500061 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 480-619
Cow position: chr27:26625270-26625130 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 71

Conread position: 480-627
Cow position: chr27:18434325-18434479 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 84

Conread position: 480-627
Cow position: chr27:22723561-22723714 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 480-627
Cow position: chr27:28001672-28001820 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 24

Conread position: 480-629
Cow position: chr27:536603-536454 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 35

Conread position: 480-629
Cow position: chr27:14343322-14343477 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 16

Conread position: 480-633
Cow position: chr27:1183730-1183893 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 480-634
Cow position: chr27:20553862-20553711 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 480-635
Cow position: chr27:21668979-21669135 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 71

Conread position: 480-636
Cow position: chr27:18544143-18543976 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 480-636
Cow position: chr27:20592129-20591963 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 480-637
Cow position: chr27:8291866-8292024 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 77, 39

Conread position: 480-637
Cow position: chr27:25380136-25379973 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 44, 76

Conread position: 480-639
Cow position: chr27:12596905-12596743 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 36

Conread position: 480-639
Cow position: chr27:19685569-19685732 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 106, 69

Conread position: 480-643
Cow position: chr27:17472958-17472784 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 480-644
Cow position: chr27:17926491-17926651 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 144, 40

Conread position: 480-644
Cow position: chr27:22440285-22440113 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 82

Conread position: 480-645
Cow position: chr27:13252155-13251979 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 69

Conread position: 480-645
Cow position: chr27:24357411-24357230 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 480-645
Cow position: chr27:28038192-28038371 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 76

Conread position: 480-646
Cow position: chr27:19589621-19589444 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 87

Conread position: 480-647
Cow position: chr27:27550602-27550773 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 480-648
Cow position: chr27:1290719-1290884 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 142, 77

Conread position: 480-648
Cow position: chr27:4385921-4386094 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 47

Conread position: 480-648
Cow position: chr27:6523191-6523011 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 27, 82

Conread position: 480-648
Cow position: chr27:6550596-6550426 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 44

Conread position: 480-648
Cow position: chr27:8962124-8962289 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 100, 7

Conread position: 480-648
Cow position: chr27:9169499-9169679 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 72

Conread position: 480-648
Cow position: chr27:12278127-12278291 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 140, 44

Conread position: 480-648
Cow position: chr27:15643321-15643140 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 76

Conread position: 480-648
Cow position: chr27:18215201-18215020 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 0

Conread position: 480-648
Cow position: chr27:18593416-18593236 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 76

Conread position: 480-648
Cow position: chr27:20046023-20045857 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 121, 26

Conread position: 480-648
Cow position: chr27:20354725-20354557 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 107, 18

Conread position: 480-648
Cow position: chr27:23891083-23890905 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 44, 34

Conread position: 480-648
Cow position: chr27:25277282-25277107 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 44, 23

Conread position: 480-648
Cow position: chr27:25809377-25809552 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 76, 17

Conread position: 480-648
Cow position: chr27:26398113-26398291 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 81

Conread position: 480-648
Cow position: chr27:26509011-26509191 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 83

Conread position: 480-648
Cow position: chr27:27019955-27020139 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 69

Conread position: 480-648
Cow position: chr27:27141739-27141569 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 78

Conread position: 480-648
Cow position: chr27:27554540-27554713 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 109, 76

Conread position: 480-648
Cow position: chr27:28190072-28190247 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 78

Conread position: 480-648
Cow position: chr27:28518431-28518265 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 41, 0

Conread position: 480-648
Cow position: chr27:28921751-28921927 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 480-648
Cow position: chr27:29283263-29283441 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 72

Conread position: 480-648
Cow position: chr27:30362389-30362213 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 40, 81

Conread position: 480-648
Cow position: chr27:30868593-30868773 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 480-648
Cow position: chr27:30988943-30988764 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 73

Conread position: 480-648
Cow position: chr27:31147528-31147702 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 20

Conread position: 480-649
Cow position: chr27:13875880-13875694 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 76

Conread position: 480-649
Cow position: chr27:21569698-21569874 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 480-649
Cow position: chr27:22268650-22268467 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 83

Conread position: 480-650
Cow position: chr27:26807418-26807594 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 78

Conread position: 480-654
Cow position: chr27:20544089-20543907 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 32, 84

Conread position: 480-671
Cow position: chr27:20036983-20037171 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 26

Conread position: 480-676
Cow position: chr27:9090656-9090862 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 480-681
Cow position: chr27:10992499-10992286 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 65

Conread position: 480-681
Cow position: chr27:30765177-30764964 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 31

Conread position: 480-686
Cow position: chr27:7649437-7649647 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 96

Conread position: 480-693
Cow position: chr27:30915147-30914932 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 113, 41

Conread position: 480-700
Cow position: chr27:8942538-8942765 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 61, 44

Conread position: 481-627
Cow position: chr27:27270394-27270548 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 481-628
Cow position: chr27:27040752-27040594 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 481-637
Cow position: chr27:16705391-16705233 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 39, 71

Conread position: 481-648
Cow position: chr27:22454637-22454808 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 36

Conread position: 481-648
Cow position: chr27:29816477-29816653 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 81

Conread position: 481-648
Cow position: chr27:30871915-30872092 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 43, 71

Conread position: 481-649
Cow position: chr27:6058647-6058470 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 162

Conread position: 482-632
Cow position: chr27:29399958-29399801 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 69

Conread position: 482-648
Cow position: chr27:14902505-14902686 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 61

Conread position: 482-648
Cow position: chr27:24227650-24227827 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 482-692
Cow position: chr27:12246802-12246585 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 70

Conread position: 483-648
Cow position: chr27:27259751-27259581 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 39, 69

Conread position: 486-615
Cow position: chr27:24027110-24026977 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 101, 48

Conread position: 492-649
Cow position: chr27:16238036-16237875 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 31, 64

Conread position: 493-629
Cow position: chr27:2592679-2592536 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 64

Conread position: 493-648
Cow position: chr27:12429535-12429376 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 151

Conread position: 498-646
Cow position: chr27:10395134-10395287 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 50

Conread position: 498-648
Cow position: chr27:4011806-4011646 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 135
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 498-648
Cow position: chr27:7537949-7538112 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 498-678
Cow position: chr27:8168302-8168496 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 54

Conread position: 511-656
Cow position: chr27:30260781-30260930 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 38

Conread position: 522-686
Cow position: chr27:20570222-20570049 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 149

Conread position: 522-693
Cow position: chr27:8263235-8263415 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 5

Show alignments to all cow chromosomes.