Cow genome map

Conread name: Ss1.1-Pig3-SRG8016N24.5

Conread position: 465-648
Cow position: chr28:118254-118056 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 48, 97

Conread position: 473-615
Cow position: chr28:22279383-22279246 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 84

Conread position: 474-648
Cow position: chr28:19023943-19024139 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 477-633
Cow position: chr28:28903852-28903689 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 6

Conread position: 478-648
Cow position: chr28:23410509-23410331 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 59

Conread position: 478-648
Cow position: chr28:28076593-28076425 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 478-648
Cow position: chr28:30293775-30293594 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 45, 153

Conread position: 478-676
Cow position: chr28:5771184-5771387 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 109, 71

Conread position: 479-638
Cow position: chr28:19054832-19054994 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 479-648
Cow position: chr28:2752685-2752500 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 480-585
Cow position: chr28:13371352-13371250 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 480-586
Cow position: chr28:16450883-16450779 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 480-613
Cow position: chr28:10999852-10999723 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 480-616
Cow position: chr28:2905397-2905535 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 72

Conread position: 480-619
Cow position: chr28:2898812-2898961 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 480-622
Cow position: chr28:3077809-3077955 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 111, 69

Conread position: 480-624
Cow position: chr28:3144075-3143918 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 72

Conread position: 480-624
Cow position: chr28:22170901-22170748 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 480-624
Cow position: chr28:24966209-24966352 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 79

Conread position: 480-627
Cow position: chr28:5188585-5188433 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 100, 68

Conread position: 480-627
Cow position: chr28:11827310-11827459 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 47

Conread position: 480-627
Cow position: chr28:25727194-25727341 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 79

Conread position: 480-627
Cow position: chr28:34082205-34082046 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 33, 58

Conread position: 480-628
Cow position: chr28:16253041-16252888 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 129
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 69

Conread position: 480-629
Cow position: chr28:26684929-26685087 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 74

Conread position: 480-630
Cow position: chr28:7751484-7751329 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 76

Conread position: 480-631
Cow position: chr28:15272444-15272289 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 146

Conread position: 480-632
Cow position: chr28:24996772-24996612 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 79

Conread position: 480-633
Cow position: chr28:5817663-5817816 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 121, 45

Conread position: 480-633
Cow position: chr28:25596449-25596601 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 80

Conread position: 480-634
Cow position: chr28:8348836-8348674 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 83

Conread position: 480-636
Cow position: chr28:3078861-3078703 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 111, 69

Conread position: 480-636
Cow position: chr28:9285561-9285393 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 76

Conread position: 480-638
Cow position: chr28:4057802-4057962 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 42, 63

Conread position: 480-638
Cow position: chr28:10682002-10681841 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 34

Conread position: 480-638
Cow position: chr28:10745026-10745194 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 147

Conread position: 480-639
Cow position: chr28:7684862-7684700 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 79

Conread position: 480-641
Cow position: chr28:7980602-7980436 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 82

Conread position: 480-644
Cow position: chr28:25459342-25459520 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 73

Conread position: 480-644
Cow position: chr28:31110189-31110014 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 480-645
Cow position: chr28:21380691-21380868 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 82

Conread position: 480-646
Cow position: chr28:26743438-26743618 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 480-648
Cow position: chr28:4881428-4881246 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 40, 173

Conread position: 480-648
Cow position: chr28:5144705-5144527 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 44, 101

Conread position: 480-648
Cow position: chr28:5773456-5773630 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 72

Conread position: 480-648
Cow position: chr28:6307706-6307886 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 52, 128

Conread position: 480-648
Cow position: chr28:7228569-7228391 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 32, 9

Conread position: 480-648
Cow position: chr28:7590365-7590187 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 72

Conread position: 480-648
Cow position: chr28:9099752-9099930 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 39, 79

Conread position: 480-648
Cow position: chr28:9390548-9390369 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 80

Conread position: 480-648
Cow position: chr28:16085141-16085319 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 21

Conread position: 480-648
Cow position: chr28:17029899-17029723 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 79

Conread position: 480-648
Cow position: chr28:17288041-17288210 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 61

Conread position: 480-648
Cow position: chr28:19222781-19222608 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 44, 137

Conread position: 480-648
Cow position: chr28:21502211-21502386 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 83

Conread position: 480-648
Cow position: chr28:26103532-26103698 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 98, 44

Conread position: 480-648
Cow position: chr28:26784650-26784469 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 44, 0

Conread position: 480-648
Cow position: chr28:26922548-26922374 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 66

Conread position: 480-648
Cow position: chr28:26982930-26982744 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 480-649
Cow position: chr28:4841579-4841402 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 76

Conread position: 480-649
Cow position: chr28:6059656-6059475 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 480-649
Cow position: chr28:20313091-20313272 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 480-649
Cow position: chr28:21598437-21598257 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 72

Conread position: 480-649
Cow position: chr28:22321238-22321422 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 76

Conread position: 480-650
Cow position: chr28:751041-751223 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 164

Conread position: 480-650
Cow position: chr28:16109761-16109934 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 142, 69

Conread position: 480-650
Cow position: chr28:23459961-23460144 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 37, 145

Conread position: 480-655
Cow position: chr28:13267598-13267787 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 76

Conread position: 480-677
Cow position: chr28:3105055-3105273 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 480-680
Cow position: chr28:23724639-23724435 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 80

Conread position: 480-681
Cow position: chr28:23007909-23007702 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 113, 26

Conread position: 480-681
Cow position: chr28:23793486-23793283 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 72

Conread position: 480-741
Cow position: chr28:11786892-11786624 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 149, 41

Conread position: 481-648
Cow position: chr28:18354501-18354334 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 104, 15

Conread position: 482-648
Cow position: chr28:4282673-4282496 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 79

Conread position: 482-649
Cow position: chr28:10529664-10529495 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 148, 159

Conread position: 482-743
Cow position: chr28:2124249-2124498 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 38

Conread position: 483-627
Cow position: chr28:25701042-25700902 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 484-635
Cow position: chr28:2961011-2960854 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 76

Conread position: 484-649
Cow position: chr28:25283024-25283195 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 72

Conread position: 485-648
Cow position: chr28:22739619-22739786 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 99, 39

Conread position: 485-649
Cow position: chr28:8656919-8656752 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 22

Conread position: 486-619
Cow position: chr28:22485068-22485205 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 486-649
Cow position: chr28:25728028-25728194 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 94, 31

Conread position: 487-647
Cow position: chr28:20409216-20409385 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 65

Conread position: 488-585
Cow position: chr28:26264628-26264729 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 488-638
Cow position: chr28:14720953-14720796 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 488-644
Cow position: chr28:9928455-9928299 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 135, 10

Conread position: 488-677
Cow position: chr28:17235904-17235708 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 49

Conread position: 488-677
Cow position: chr28:26719181-26719365 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 36

Conread position: 489-648
Cow position: chr28:4643939-4643776 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 63

Conread position: 490-630
Cow position: chr28:14151061-14151206 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 136

Conread position: 494-619
Cow position: chr28:9426520-9426389 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 84

Conread position: 497-648
Cow position: chr28:5224550-5224701 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 125, 66

Conread position: 498-648
Cow position: chr28:34430588-34430429 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 54

Conread position: 498-654
Cow position: chr28:15007996-15008161 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 18, 62

Conread position: 503-648
Cow position: chr28:25806411-25806567 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 21, 56

Conread position: 516-656
Cow position: chr28:22571809-22571660 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 41

Conread position: 521-648
Cow position: chr28:30746867-30746736 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 23

Conread position: 652-777
Cow position: chr28:16964866-16964734 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Show alignments to all cow chromosomes.