Cow genome map

Conread name: Ss1.1-Pig3-SRG8016N24.5

Conread position: 461-648
Cow position: chr29:11054063-11053872 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 113, 24

Conread position: 466-649
Cow position: chr29:4334523-4334714 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 58, 93

Conread position: 473-648
Cow position: chr29:2532864-2533046 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 89

Conread position: 477-648
Cow position: chr29:43495866-43496035 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 145, 47

Conread position: 478-632
Cow position: chr29:4065894-4066055 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 20

Conread position: 478-643
Cow position: chr29:30440733-30440912 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 478-648
Cow position: chr29:32767713-32767545 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 478-649
Cow position: chr29:5652528-5652693 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 46

Conread position: 478-698
Cow position: chr29:7666223-7666000 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 124

Conread position: 479-629
Cow position: chr29:14484737-14484578 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 480-624
Cow position: chr29:4805043-4805193 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 480-624
Cow position: chr29:9139218-9139374 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 480-626
Cow position: chr29:36037509-36037665 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 480-627
Cow position: chr29:22068937-22068782 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 69, 12

Conread position: 480-629
Cow position: chr29:4520145-4520302 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 72

Conread position: 480-629
Cow position: chr29:41747250-41747410 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 480-630
Cow position: chr29:36586388-36586544 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 147

Conread position: 480-631
Cow position: chr29:28979670-28979518 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 144, 0

Conread position: 480-632
Cow position: chr29:585091-585245 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 69

Conread position: 480-633
Cow position: chr29:87212-87045 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 480-633
Cow position: chr29:22175500-22175658 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 23, 67

Conread position: 480-636
Cow position: chr29:7966055-7966213 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 115

Conread position: 480-636
Cow position: chr29:14501400-14501564 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 480-637
Cow position: chr29:17668305-17668464 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 81

Conread position: 480-638
Cow position: chr29:18735833-18735666 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 149

Conread position: 480-638
Cow position: chr29:19762082-19762245 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 84

Conread position: 480-642
Cow position: chr29:18212173-18212013 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 51

Conread position: 480-643
Cow position: chr29:3711196-3711371 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 480-645
Cow position: chr29:21236926-21237097 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 13

Conread position: 480-646
Cow position: chr29:94739-94569 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 43

Conread position: 480-646
Cow position: chr29:11433932-11434104 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 42, 72

Conread position: 480-646
Cow position: chr29:11696343-11696515 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 102, 69

Conread position: 480-646
Cow position: chr29:28868442-28868624 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 82

Conread position: 480-647
Cow position: chr29:6925829-6925995 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 26

Conread position: 480-647
Cow position: chr29:24952494-24952674 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 480-648
Cow position: chr29:707136-706962 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 23

Conread position: 480-648
Cow position: chr29:868582-868762 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 0

Conread position: 480-648
Cow position: chr29:2644498-2644312 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 7

Conread position: 480-648
Cow position: chr29:2984694-2984878 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 480-648
Cow position: chr29:6286348-6286174 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 78

Conread position: 480-648
Cow position: chr29:7041029-7040861 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 33, 57

Conread position: 480-648
Cow position: chr29:12784145-12783973 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 77

Conread position: 480-648
Cow position: chr29:17131798-17131632 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 43

Conread position: 480-648
Cow position: chr29:20178315-20178147 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 80

Conread position: 480-648
Cow position: chr29:22778372-22778188 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 83

Conread position: 480-648
Cow position: chr29:24119927-24119753 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 480-648
Cow position: chr29:24292680-24292855 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 480-648
Cow position: chr29:28195707-28195528 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 73

Conread position: 480-648
Cow position: chr29:29056990-29057166 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 480-648
Cow position: chr29:29769536-29769364 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 13

Conread position: 480-648
Cow position: chr29:30188531-30188350 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 80

Conread position: 480-648
Cow position: chr29:31926481-31926302 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 39, 73

Conread position: 480-648
Cow position: chr29:34744807-34744633 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 79

Conread position: 480-648
Cow position: chr29:35738460-35738285 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 32, 89

Conread position: 480-648
Cow position: chr29:36183083-36183268 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 65

Conread position: 480-648
Cow position: chr29:39642986-39643163 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 24

Conread position: 480-648
Cow position: chr29:41364919-41365098 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 480-648
Cow position: chr29:44988972-44988802 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 32, 74

Conread position: 480-649
Cow position: chr29:2071759-2071584 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 97, 27

Conread position: 480-649
Cow position: chr29:6844820-6844644 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 137

Conread position: 480-649
Cow position: chr29:17409140-17409322 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 180

Conread position: 480-649
Cow position: chr29:37599395-37599222 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 120, 69

Conread position: 480-650
Cow position: chr29:109519-109683 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 81

Conread position: 480-650
Cow position: chr29:16195662-16195831 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 69

Conread position: 480-674
Cow position: chr29:3502867-3503069 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 50

Conread position: 480-677
Cow position: chr29:4194313-4194101 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 480-681
Cow position: chr29:28775645-28775438 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 35

Conread position: 480-681
Cow position: chr29:39567497-39567707 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 65

Conread position: 480-681
Cow position: chr29:40299203-40298999 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 19, 95

Conread position: 480-682
Cow position: chr29:356136-356341 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 43, 71

Conread position: 480-691
Cow position: chr29:6870975-6870755 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 69

Conread position: 480-692
Cow position: chr29:40166052-40166275 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 12

Conread position: 480-712
Cow position: chr29:25088563-25088795 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 72

Conread position: 480-715
Cow position: chr29:9686191-9685936 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 18

Conread position: 481-646
Cow position: chr29:6337473-6337648 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 76

Conread position: 481-648
Cow position: chr29:11646914-11647082 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 142, 47

Conread position: 481-692
Cow position: chr29:11915627-11915849 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 175

Conread position: 482-637
Cow position: chr29:1022101-1022269 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 482-648
Cow position: chr29:23697790-23697964 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 483-635
Cow position: chr29:750094-749937 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 483-637
Cow position: chr29:16657497-16657664 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 484-648
Cow position: chr29:463840-463667 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 485-648
Cow position: chr29:31928796-31928976 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 488-636
Cow position: chr29:37618123-37618274 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 71

Conread position: 488-648
Cow position: chr29:8669184-8669353 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 488-681
Cow position: chr29:1395417-1395618 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 40

Conread position: 490-647
Cow position: chr29:10235310-10235144 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 63

Conread position: 491-649
Cow position: chr29:17287-17119 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 71

Conread position: 498-648
Cow position: chr29:6293648-6293491 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 140

Conread position: 501-648
Cow position: chr29:32799881-32799718 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 501-681
Cow position: chr29:12025639-12025446 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 13

Conread position: 503-649
Cow position: chr29:4085152-4085301 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 130

Conread position: 503-684
Cow position: chr29:25432236-25432423 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 56

Conread position: 517-748
Cow position: chr29:4052134-4051899 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 38

Show alignments to all cow chromosomes.