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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8017D19.3
        

               
Conread position:
               
200-875
               

               
Cow position:
               
chr27:714921-715603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
608, 468
               

               
Conread position:
               
476-887
               

               
Cow position:
               
chr27:11435637-11435207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
487-875
               

               
Cow position:
               
chr27:30872352-30871959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
493-875
               

               
Cow position:
               
chr27:8630167-8629773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
506-820
               

               
Cow position:
               
chr27:14269611-14269306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
513-747
               

               
Cow position:
               
chr27:24693149-24693377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
518-724
               

               
Cow position:
               
chr27:22792570-22792773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
520-816
               

               
Cow position:
               
chr27:19932800-19933097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 153
               

               
Conread position:
               
525-832
               

               
Cow position:
               
chr27:20749264-20748963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
527-863
               

               
Cow position:
               
chr27:28190450-28190129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
281, 87
               

               
Conread position:
               
528-875
               

               
Cow position:
               
chr27:7412135-7412479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 142
               

               
Conread position:
               
528-875
               

               
Cow position:
               
chr27:27442418-27442070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
280, 98
               

               
Conread position:
               
530-728
               

               
Cow position:
               
chr27:29458074-29458289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
530-732
               

               
Cow position:
               
chr27:31248861-31248664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
530-742
               

               
Cow position:
               
chr27:27648571-27648359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 138
               

               
Conread position:
               
530-757
               

               
Cow position:
               
chr27:26118241-26118473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
530-816
               

               
Cow position:
               
chr27:15926542-15926831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
530-827
               

               
Cow position:
               
chr27:18558102-18558402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 137
               

               
Conread position:
               
530-873
               

               
Cow position:
               
chr27:22171046-22171398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 138
               

               
Conread position:
               
530-873
               

               
Cow position:
               
chr27:22547641-22547310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
278, 10
               

               
Conread position:
               
530-887
               

               
Cow position:
               
chr27:18031326-18030949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
228, 133
               

               
Conread position:
               
531-766
               

               
Cow position:
               
chr27:26121503-26121743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
92, 144
               

               
Conread position:
               
531-821
               

               
Cow position:
               
chr27:12425033-12425325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 196
               

               
Conread position:
               
531-825
               

               
Cow position:
               
chr27:28896624-28896921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
531-827
               

               
Cow position:
               
chr27:16965320-16965616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
79, 141
               

               
Conread position:
               
531-848
               

               
Cow position:
               
chr27:4944758-4944445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 9
               

               
Conread position:
               
531-886
               

               
Cow position:
               
chr27:2930846-2930486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 257
               

               
Conread position:
               
532-807
               

               
Cow position:
               
chr27:26794037-26793767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
532-823
               

               
Cow position:
               
chr27:212697-213003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
532-826
               

               
Cow position:
               
chr27:7346416-7346706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 186
               

               
Conread position:
               
532-827
               

               
Cow position:
               
chr27:20514571-20514864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
532-887
               

               
Cow position:
               
chr27:10582117-10582478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
533-662
               

               
Cow position:
               
chr27:30441449-30441587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
533-710
               

               
Cow position:
               
chr27:3498305-3498478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
533-714
               

               
Cow position:
               
chr27:27606547-27606365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
533-716
               

               
Cow position:
               
chr27:18752594-18752789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
533-741
               

               
Cow position:
               
chr27:26400970-26400763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
533-747
               

               
Cow position:
               
chr27:6162657-6162446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
533-767
               

               
Cow position:
               
chr27:6106454-6106684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
533-777
               

               
Cow position:
               
chr27:24303690-24303940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
533-799
               

               
Cow position:
               
chr27:26437373-26437105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr27:26852835-26852549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 139
               

               
Conread position:
               
533-866
               

               
Cow position:
               
chr27:30914754-30915097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
86, 139
               

               
Conread position:
               
533-874
               

               
Cow position:
               
chr27:27460830-27460476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
533-875
               

               
Cow position:
               
chr27:15867140-15867498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
104, 134
               

               
Conread position:
               
533-887
               

               
Cow position:
               
chr27:13875480-13875842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
533-887
               

               
Cow position:
               
chr27:15925095-15925456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
534-744
               

               
Cow position:
               
chr27:24223702-24223913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 37
               

               
Conread position:
               
534-777
               

               
Cow position:
               
chr27:8790994-8790747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 64
               

               
Conread position:
               
534-819
               

               
Cow position:
               
chr27:23560282-23559995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 138
               

               
Conread position:
               
534-827
               

               
Cow position:
               
chr27:1353329-1353630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
534-827
               

               
Cow position:
               
chr27:23128213-23128499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 113
               

               
Conread position:
               
534-867
               

               
Cow position:
               
chr27:29380610-29380951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
534-884
               

               
Cow position:
               
chr27:21990891-21991265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 116
               

               
Conread position:
               
535-662
               

               
Cow position:
               
chr27:24952202-24952072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
535-692
               

               
Cow position:
               
chr27:21448072-21447920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
535-711
               

               
Cow position:
               
chr27:27450133-27449957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
535-727
               

               
Cow position:
               
chr27:20048386-20048578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
99, 131
               

               
Conread position:
               
535-733
               

               
Cow position:
               
chr27:18791764-18791559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
535-734
               

               
Cow position:
               
chr27:3518251-3518456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 112
               

               
Conread position:
               
535-734
               

               
Cow position:
               
chr27:13801554-13801760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 56
               

               
Conread position:
               
535-734
               

               
Cow position:
               
chr27:18688660-18688458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
535-767
               

               
Cow position:
               
chr27:15315272-15315501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
535-807
               

               
Cow position:
               
chr27:20584719-20584436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
535-825
               

               
Cow position:
               
chr27:6541384-6541670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 126
               

               
Conread position:
               
535-825
               

               
Cow position:
               
chr27:6924831-6925129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
81, 137
               

               
Conread position:
               
535-827
               

               
Cow position:
               
chr27:5553221-5553508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
535-827
               

               
Cow position:
               
chr27:30407298-30406994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
535-870
               

               
Cow position:
               
chr27:19500486-19500139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
535-874
               

               
Cow position:
               
chr27:2592285-2592648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
535-874
               

               
Cow position:
               
chr27:19387770-19388113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr27:8062602-8062260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr27:14670630-14670284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr27:27020346-27020002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr27:27438758-27438404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
535-886
               

               
Cow position:
               
chr27:18543737-18544110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
536-775
               

               
Cow position:
               
chr27:30455743-30455986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
536-799
               

               
Cow position:
               
chr27:11982897-11982635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
536-870
               

               
Cow position:
               
chr27:426721-427064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
536-874
               

               
Cow position:
               
chr27:29831958-29831588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 145
               

               
Conread position:
               
536-875
               

               
Cow position:
               
chr27:19648189-19647839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 82
               

               
Conread position:
               
537-737
               

               
Cow position:
               
chr27:11133839-11134040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
75, 132
               

               
Conread position:
               
537-741
               

               
Cow position:
               
chr27:29614793-29615000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 128
               

               
Conread position:
               
537-777
               

               
Cow position:
               
chr27:31169354-31169116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
537-827
               

               
Cow position:
               
chr27:23859914-23860212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
82, 130
               

               
Conread position:
               
537-870
               

               
Cow position:
               
chr27:16786583-16786918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
537-874
               

               
Cow position:
               
chr27:28922143-28921799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
537-875
               

               
Cow position:
               
chr27:26509404-26509060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
537-878
               

               
Cow position:
               
chr27:26087072-26087399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
538-875
               

               
Cow position:
               
chr27:20283395-20283742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 74
               

               
Conread position:
               
539-882
               

               
Cow position:
               
chr27:22550017-22549676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 206
               

               
Conread position:
               
539-887
               

               
Cow position:
               
chr27:16275926-16275557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
540-719
               

               
Cow position:
               
chr27:11208803-11208618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
540-776
               

               
Cow position:
               
chr27:26617169-26617400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
540-873
               

               
Cow position:
               
chr27:28932048-28931693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
85, 131
               

               
Conread position:
               
540-874
               

               
Cow position:
               
chr27:20354354-20354683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
540-874
               

               
Cow position:
               
chr27:20828950-20828613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
540-887
               

               
Cow position:
               
chr27:17472568-17472924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
541-695
               

               
Cow position:
               
chr27:28062439-28062286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
541-711
               

               
Cow position:
               
chr27:31153800-31153629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
81, 33
               

               
Conread position:
               
541-712
               

               
Cow position:
               
chr27:11145637-11145808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
541-724
               

               
Cow position:
               
chr27:31515798-31515608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
541-727
               

               
Cow position:
               
chr27:11528684-11528874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
541-730
               

               
Cow position:
               
chr27:16047732-16047551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
541-826
               

               
Cow position:
               
chr27:26434058-26433768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 244
               

               
Conread position:
               
541-827
               

               
Cow position:
               
chr27:27204682-27204374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 157
               

               
Conread position:
               
541-865
               

               
Cow position:
               
chr27:28206559-28206884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
541-870
               

               
Cow position:
               
chr27:8962486-8962167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
541-870
               

               
Cow position:
               
chr27:30868996-30868647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 239
               

               
Conread position:
               
542-875
               

               
Cow position:
               
chr27:26865352-26865020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 126
               

               
Conread position:
               
542-887
               

               
Cow position:
               
chr27:30764789-30765149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
543-887
               

               
Cow position:
               
chr27:29816872-29816508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
549-736
               

               
Cow position:
               
chr27:25790066-25790245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
550-711
               

               
Cow position:
               
chr27:30444910-30444752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
550-716
               

               
Cow position:
               
chr27:26983927-26984095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
550-736
               

               
Cow position:
               
chr27:17102664-17102849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
550-758
               

               
Cow position:
               
chr27:16246572-16246781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
550-761
               

               
Cow position:
               
chr27:6241428-6241214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
550-766
               

               
Cow position:
               
chr27:10404353-10404133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
550-769
               

               
Cow position:
               
chr27:27740529-27740305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
550-822
               

               
Cow position:
               
chr27:19669041-19668759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
113, 105
               

               
Conread position:
               
550-825
               

               
Cow position:
               
chr27:26112154-26111868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
550-826
               

               
Cow position:
               
chr27:31373208-31372936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
224, 83
               

               
Conread position:
               
550-827
               

               
Cow position:
               
chr27:24331478-24331764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
48, 130
               

               
Conread position:
               
550-827
               

               
Cow position:
               
chr27:31151148-31151420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
550-829
               

               
Cow position:
               
chr27:18882421-18882700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
550-854
               

               
Cow position:
               
chr27:1637162-1636869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
550-865
               

               
Cow position:
               
chr27:29185081-29184748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 197
               

               
Conread position:
               
550-870
               

               
Cow position:
               
chr27:12515958-12516290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 119
               

               
Conread position:
               
550-870
               

               
Cow position:
               
chr27:15865374-15865700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr27:10979624-10979960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
550-884
               

               
Cow position:
               
chr27:18646385-18646036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
550-886
               

               
Cow position:
               
chr27:20045660-20045998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
550-887
               

               
Cow position:
               
chr27:10307539-10307186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 156
               

               
Conread position:
               
550-887
               

               
Cow position:
               
chr27:28002039-28001696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 82
               

               
Conread position:
               
551-748
               

               
Cow position:
               
chr27:26481432-26481230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
551-838
               

               
Cow position:
               
chr27:591004-590704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
551-870
               

               
Cow position:
               
chr27:20101132-20101462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
551-875
               

               
Cow position:
               
chr27:4858854-4858546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 60
               

               
Conread position:
               
551-875
               

               
Cow position:
               
chr27:30890066-30890387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
260, 70
               

               
Conread position:
               
551-876
               

               
Cow position:
               
chr27:24446373-24446057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
212, 65
               

               
Conread position:
               
551-886
               

               
Cow position:
               
chr27:4390492-4390146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
552-661
               

               
Cow position:
               
chr27:23527733-23527620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
552-691
               

               
Cow position:
               
chr27:20561354-20561490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
552-708
               

               
Cow position:
               
chr27:24358106-24358258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
552-709
               

               
Cow position:
               
chr27:9253346-9253187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 106
               

               
Conread position:
               
552-710
               

               
Cow position:
               
chr27:26939844-26940006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 116
               

               
Conread position:
               
552-716
               

               
Cow position:
               
chr27:21951214-21951045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
552-719
               

               
Cow position:
               
chr27:20325123-20325287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
552-720
               

               
Cow position:
               
chr27:19557159-19557326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
552-729
               

               
Cow position:
               
chr27:26909822-26909645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 115
               

               
Conread position:
               
552-731
               

               
Cow position:
               
chr27:2949550-2949379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
552-734
               

               
Cow position:
               
chr27:232317-232505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
552-734
               

               
Cow position:
               
chr27:1184407-1184226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
552-734
               

               
Cow position:
               
chr27:19741625-19741457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
552-736
               

               
Cow position:
               
chr27:7425422-7425235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
552-736
               

               
Cow position:
               
chr27:13204231-13204412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
552-739
               

               
Cow position:
               
chr27:12284760-12284950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
552-746
               

               
Cow position:
               
chr27:5539926-5539730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
552-749
               

               
Cow position:
               
chr27:20548576-20548777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 119
               

               
Conread position:
               
552-761
               

               
Cow position:
               
chr27:18435364-18435155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
86, 121
               

               
Conread position:
               
552-762
               

               
Cow position:
               
chr27:15003213-15002999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
552-767
               

               
Cow position:
               
chr27:22245407-22245610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
552-767
               

               
Cow position:
               
chr27:29319171-29319395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
552-770
               

               
Cow position:
               
chr27:7343662-7343441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
552-781
               

               
Cow position:
               
chr27:27055062-27055284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
552-798
               

               
Cow position:
               
chr27:20897254-20897011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
552-819
               

               
Cow position:
               
chr27:2644332-2644056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 214
               

               
Conread position:
               
552-823
               

               
Cow position:
               
chr27:3306552-3306809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
256, 65
               

               
Conread position:
               
552-823
               

               
Cow position:
               
chr27:13940784-13940520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr27:16088557-16088852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr27:21978377-21978096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr27:28260768-28260496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
552-828
               

               
Cow position:
               
chr27:30885004-30885270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
68, 89
               

               
Conread position:
               
552-838
               

               
Cow position:
               
chr27:23484982-23485267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
552-865
               

               
Cow position:
               
chr27:30814183-30814504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
552-866
               

               
Cow position:
               
chr27:22035605-22035286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 112
               

               
Conread position:
               
552-866
               

               
Cow position:
               
chr27:22602941-22603262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
552-870
               

               
Cow position:
               
chr27:8353261-8353568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
552-870
               

               
Cow position:
               
chr27:15453979-15454306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
552-870
               

               
Cow position:
               
chr27:16103577-16103902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
552-870
               

               
Cow position:
               
chr27:28018089-28018428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
552-872
               

               
Cow position:
               
chr27:29431242-29431554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
552-873
               

               
Cow position:
               
chr27:2957183-2957499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
82, 74
               

               
Conread position:
               
552-873
               

               
Cow position:
               
chr27:27389261-27388926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:299608-299287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:815100-815466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
59, 235
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:11480872-11480529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:14343669-14343366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:15409259-15408943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 60
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:16705019-16705347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:17995175-17994842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:19546755-19546406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:22220316-22220650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:26226522-26226190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:27632827-27632510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr27:29494132-29493812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
552-876
               

               
Cow position:
               
chr27:15669008-15668669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
552-884
               

               
Cow position:
               
chr27:23929744-23930083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
552-886
               

               
Cow position:
               
chr27:27856105-27856442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
553-707
               

               
Cow position:
               
chr27:178630-178787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
553-709
               

               
Cow position:
               
chr27:28476341-28476187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
553-741
               

               
Cow position:
               
chr27:19576556-19576365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
553-801
               

               
Cow position:
               
chr27:19508779-19509030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
553-829
               

               
Cow position:
               
chr27:29593861-29593583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
553-862
               

               
Cow position:
               
chr27:18507412-18507721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
553-869
               

               
Cow position:
               
chr27:23510742-23511084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
553-874
               

               
Cow position:
               
chr27:16284256-16284568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
205, 53
               

               
Conread position:
               
554-704
               

               
Cow position:
               
chr27:21419415-21419269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
554-710
               

               
Cow position:
               
chr27:23477716-23477873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
554-716
               

               
Cow position:
               
chr27:22497796-22497955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
554-736
               

               
Cow position:
               
chr27:10581302-10581482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
554-747
               

               
Cow position:
               
chr27:26323210-26323412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
554-748
               

               
Cow position:
               
chr27:19452767-19452967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
554-763
               

               
Cow position:
               
chr27:29388440-29388652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
554-797
               

               
Cow position:
               
chr27:31210318-31210559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
554-803
               

               
Cow position:
               
chr27:27558737-27558481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
554-806
               

               
Cow position:
               
chr27:11561543-11561796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
554-809
               

               
Cow position:
               
chr27:25151857-25152105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
554-823
               

               
Cow position:
               
chr27:31386862-31386603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 108
               

               
Conread position:
               
554-824
               

               
Cow position:
               
chr27:12459056-12459321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
554-826
               

               
Cow position:
               
chr27:13411600-13411321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
554-827
               

               
Cow position:
               
chr27:15378713-15378435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
554-866
               

               
Cow position:
               
chr27:21393725-21393410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
189, 58
               

               
Conread position:
               
554-870
               

               
Cow position:
               
chr27:23452231-23452542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
554-870
               

               
Cow position:
               
chr27:23735737-23736057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
554-873
               

               
Cow position:
               
chr27:10992142-10992452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
208, 57
               

               
Conread position:
               
554-873
               

               
Cow position:
               
chr27:31231311-31230995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr27:17397683-17397350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr27:22386656-22386970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
254, 62
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr27:23594087-23594416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr27:24228036-24227693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr27:26999655-26999319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
554-879
               

               
Cow position:
               
chr27:22560058-22559717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
554-886
               

               
Cow position:
               
chr27:22330890-22330556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
554-887
               

               
Cow position:
               
chr27:6550227-6550568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
554-887
               

               
Cow position:
               
chr27:12596550-12596876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
555-688
               

               
Cow position:
               
chr27:22150924-22150789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
555-715
               

               
Cow position:
               
chr27:23177543-23177380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
555-723
               

               
Cow position:
               
chr27:641268-641105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
555-805
               

               
Cow position:
               
chr27:11994098-11993845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
555-825
               

               
Cow position:
               
chr27:22489041-22489319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
555-827
               

               
Cow position:
               
chr27:19660697-19660978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
57, 123
               

               
Conread position:
               
555-827
               

               
Cow position:
               
chr27:26424807-26424543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
555-874
               

               
Cow position:
               
chr27:26490136-26489806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 119
               

               
Conread position:
               
555-874
               

               
Cow position:
               
chr27:28518062-28518389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
555-875
               

               
Cow position:
               
chr27:435001-435335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
100, 76
               

               
Conread position:
               
555-875
               

               
Cow position:
               
chr27:23554560-23554224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
555-876
               

               
Cow position:
               
chr27:22735825-22735501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
555-887
               

               
Cow position:
               
chr27:20037330-20037015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
556-723
               

               
Cow position:
               
chr27:1067346-1067508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
556-767
               

               
Cow position:
               
chr27:13318207-13317990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
556-774
               

               
Cow position:
               
chr27:6319693-6319910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
75, 113
               

               
Conread position:
               
556-866
               

               
Cow position:
               
chr27:26188597-26188913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 117
               

               
Conread position:
               
556-876
               

               
Cow position:
               
chr27:17331262-17331600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 154
               

               
Conread position:
               
557-826
               

               
Cow position:
               
chr27:10653453-10653728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
557-827
               

               
Cow position:
               
chr27:23108131-23107858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
557-875
               

               
Cow position:
               
chr27:27695004-27694672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
557-886
               

               
Cow position:
               
chr27:19685939-19685600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
557-887
               

               
Cow position:
               
chr27:18739145-18739499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
559-734
               

               
Cow position:
               
chr27:24755764-24755939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
559-874
               

               
Cow position:
               
chr27:23890706-23891040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
559-875
               

               
Cow position:
               
chr27:22455020-22454677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 225
               

               
Conread position:
               
560-866
               

               
Cow position:
               
chr27:26238798-26239116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
560-872
               

               
Cow position:
               
chr27:20758251-20757955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
563-870
               

               
Cow position:
               
chr27:7935381-7935060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 102
               

               
Conread position:
               
564-875
               

               
Cow position:
               
chr27:21669334-21669023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
565-758
               

               
Cow position:
               
chr27:15332509-15332320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
565-798
               

               
Cow position:
               
chr27:28478363-28478594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
565-875
               

               
Cow position:
               
chr27:12191679-12191389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
198, 40
               

               
Conread position:
               
565-877
               

               
Cow position:
               
chr27:20068196-20067876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
570-837
               

               
Cow position:
               
chr27:17646373-17646111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
238, 38
               

               
Conread position:
               
572-875
               

               
Cow position:
               
chr27:19896549-19896853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
573-887
               

               
Cow position:
               
chr27:13251811-13252117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
238, 42
               

               
Conread position:
               
574-875
               

               
Cow position:
               
chr27:8168638-8168329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
575-875
               

               
Cow position:
               
chr27:1768833-1768527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
577-875
               

               
Cow position:
               
chr27:18593084-18593367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
231, 31
               

               
Conread position:
               
579-874
               

               
Cow position:
               
chr27:26413458-26413154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
580-722
               

               
Cow position:
               
chr27:18491352-18491495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
580-837
               

               
Cow position:
               
chr27:20812709-20812967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
581-873
               

               
Cow position:
               
chr27:20481561-20481279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
587-819
               

               
Cow position:
               
chr27:14303541-14303769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
588-876
               

               
Cow position:
               
chr27:22418962-22418667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
589-873
               

               
Cow position:
               
chr27:26807756-26807465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
590-875
               

               
Cow position:
               
chr27:4813078-4812780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
596-827
               

               
Cow position:
               
chr27:7973984-7974217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
596-874
               

               
Cow position:
               
chr27:26959804-26959519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
602-871
               

               
Cow position:
               
chr27:4386242-4385966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
603-825
               

               
Cow position:
               
chr27:20803838-20803616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
603-875
               

               
Cow position:
               
chr27:20641510-20641241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
603-877
               

               
Cow position:
               
chr27:15319278-15319549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
604-873
               

               
Cow position:
               
chr27:4835784-4835513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
606-824
               

               
Cow position:
               
chr27:4720288-4720072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
608-827
               

               
Cow position:
               
chr27:24738974-24738748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
609-771
               

               
Cow position:
               
chr27:30489584-30489422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
609-870
               

               
Cow position:
               
chr27:25276970-25277236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
609-871
               

               
Cow position:
               
chr27:30988624-30988893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
609-874
               

               
Cow position:
               
chr27:15643001-15643271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
609-874
               

               
Cow position:
               
chr27:20795619-20795886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
609-876
               

               
Cow position:
               
chr27:22423343-22423599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
609-887
               

               
Cow position:
               
chr27:7731429-7731135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
609-887
               

               
Cow position:
               
chr27:24371071-24371346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
610-875
               

               
Cow position:
               
chr27:1498148-1498417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
199, 12
               

               
Conread position:
               
611-825
               

               
Cow position:
               
chr27:8942861-8942642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
613-873
               

               
Cow position:
               
chr27:19717745-19718020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
613-875
               

               
Cow position:
               
chr27:4672842-4673119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
614-818
               

               
Cow position:
               
chr27:18923001-18922796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
614-826
               

               
Cow position:
               
chr27:17918482-17918273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
614-827
               

               
Cow position:
               
chr27:27039006-27038797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
614-827
               

               
Cow position:
               
chr27:27641179-27640959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
614-875
               

               
Cow position:
               
chr27:22569616-22569872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
614-875
               

               
Cow position:
               
chr27:27064608-27064343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
614-875
               

               
Cow position:
               
chr27:27136689-27136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
614-875
               

               
Cow position:
               
chr27:30359238-30359504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
615-870
               

               
Cow position:
               
chr27:8405986-8405741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
617-827
               

               
Cow position:
               
chr27:4155833-4156045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
617-827
               

               
Cow position:
               
chr27:15215061-15215276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 124
               

               
Conread position:
               
617-865
               

               
Cow position:
               
chr27:31148596-31148851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
618-770
               

               
Cow position:
               
chr27:12710086-12710236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
618-874
               

               
Cow position:
               
chr27:12246490-12246756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
620-875
               

               
Cow position:
               
chr27:29039102-29038843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
621-827
               

               
Cow position:
               
chr27:30389457-30389252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
621-875
               

               
Cow position:
               
chr27:27844161-27843896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
622-827
               

               
Cow position:
               
chr27:26407314-26407122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
622-871
               

               
Cow position:
               
chr27:8263499-8263238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
623-874
               

               
Cow position:
               
chr27:7212869-7212618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
182, 11
               

               
Conread position:
               
623-876
               

               
Cow position:
               
chr27:20549868-20549607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
623-878
               

               
Cow position:
               
chr27:536305-536562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
628-887
               

               
Cow position:
               
chr27:9169792-9169531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
630-870
               

               
Cow position:
               
chr27:24014889-24014645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
169, 27
               

               
Conread position:
               
633-887
               

               
Cow position:
               
chr27:26581583-26581322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
635-827
               

               
Cow position:
               
chr27:20497061-20497255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
635-875
               

               
Cow position:
               
chr27:1122887-1123131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
174, 32
               

               
Conread position:
               
635-875
               

               
Cow position:
               
chr27:23472103-23472352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
635-887
               

               
Cow position:
               
chr27:20553587-20553834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
635-887
               

               
Cow position:
               
chr27:27270687-27270425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
636-875
               

               
Cow position:
               
chr27:30354488-30354243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
642-870
               

               
Cow position:
               
chr27:4806039-4805814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
169, 25
               

               
Conread position:
               
658-875
               

               
Cow position:
               
chr27:3772-3984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
666-874
               

               
Cow position:
               
chr27:25379871-25380092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
669-824
               

               
Cow position:
               
chr27:20247918-20247767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
669-875
               

               
Cow position:
               
chr27:16625786-16625997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
670-827
               

               
Cow position:
               
chr27:21975940-21976092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
138, 92
               

               
Conread position:
               
672-875
               

               
Cow position:
               
chr27:24999851-24999638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
137, 97
               

               
Conread position:
               
716-886
               

               
Cow position:
               
chr27:4011613-4011791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
723-875
               

               
Cow position:
               
chr27:16237849-16238005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
723-875
               

               
Cow position:
               
chr27:22268441-22268601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
732-870
               

               
Cow position:
               
chr27:20635127-20635262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
767-875
               

               
Cow position:
               
chr27:18434489-18434375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               
Show alignments to all cow chromosomes.