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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8017D19.3
        

               
Conread position:
               
505-875
               

               
Cow position:
               
chr6:26044011-26043648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
511-875
               

               
Cow position:
               
chr6:53652310-53651939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
521-857
               

               
Cow position:
               
chr6:37463266-37462936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 87
               

               
Conread position:
               
522-823
               

               
Cow position:
               
chr6:120494-120202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
525-741
               

               
Cow position:
               
chr6:3937042-3936822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
525-875
               

               
Cow position:
               
chr6:12669352-12668999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
526-869
               

               
Cow position:
               
chr6:45064781-45065112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
282, 15
               

               
Conread position:
               
528-809
               

               
Cow position:
               
chr6:47884791-47885049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
529-740
               

               
Cow position:
               
chr6:47173785-47173989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
529-887
               

               
Cow position:
               
chr6:16765147-16765516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
530-716
               

               
Cow position:
               
chr6:14263637-14263828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
530-733
               

               
Cow position:
               
chr6:15587340-15587549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 142
               

               
Conread position:
               
530-733
               

               
Cow position:
               
chr6:62724810-62724601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 143
               

               
Conread position:
               
530-734
               

               
Cow position:
               
chr6:66259989-66259774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
87, 148
               

               
Conread position:
               
530-797
               

               
Cow position:
               
chr6:1103493-1103752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
530-797
               

               
Cow position:
               
chr6:20219527-20219794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
530-827
               

               
Cow position:
               
chr6:6724763-6724456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 129
               

               
Conread position:
               
530-870
               

               
Cow position:
               
chr6:8804291-8804629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
279, 75
               

               
Conread position:
               
530-873
               

               
Cow position:
               
chr6:13367534-13367191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
107, 137
               

               
Conread position:
               
530-874
               

               
Cow position:
               
chr6:32126304-32125966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
101, 137
               

               
Conread position:
               
530-875
               

               
Cow position:
               
chr6:8966340-8965989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 82
               

               
Conread position:
               
530-875
               

               
Cow position:
               
chr6:18447262-18447612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
530-875
               

               
Cow position:
               
chr6:40032431-40032089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
530-875
               

               
Cow position:
               
chr6:59719061-59718692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
530-879
               

               
Cow position:
               
chr6:43345188-43345554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 115
               

               
Conread position:
               
530-882
               

               
Cow position:
               
chr6:1370978-1371341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
530-884
               

               
Cow position:
               
chr6:44078764-44078405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
530-887
               

               
Cow position:
               
chr6:21399502-21399868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 56
               

               
Conread position:
               
531-710
               

               
Cow position:
               
chr6:43540011-43540181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
531-716
               

               
Cow position:
               
chr6:49686071-49685881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
531-734
               

               
Cow position:
               
chr6:22876677-22876886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 142
               

               
Conread position:
               
531-758
               

               
Cow position:
               
chr6:66947569-66947797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 140
               

               
Conread position:
               
531-773
               

               
Cow position:
               
chr6:55548283-55548530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
531-827
               

               
Cow position:
               
chr6:17068404-17068696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
531-869
               

               
Cow position:
               
chr6:10176048-10176399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 145
               

               
Conread position:
               
531-887
               

               
Cow position:
               
chr6:53932594-53932965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
532-716
               

               
Cow position:
               
chr6:43906431-43906621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
532-783
               

               
Cow position:
               
chr6:5820010-5820251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
532-786
               

               
Cow position:
               
chr6:66590321-66590077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
532-824
               

               
Cow position:
               
chr6:68376068-68376369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
532-826
               

               
Cow position:
               
chr6:93949-94236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 134
               

               
Conread position:
               
532-827
               

               
Cow position:
               
chr6:24536276-24536589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 144
               

               
Conread position:
               
532-859
               

               
Cow position:
               
chr6:24110534-24110196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
532-863
               

               
Cow position:
               
chr6:52478161-52478506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 138
               

               
Conread position:
               
532-864
               

               
Cow position:
               
chr6:48567110-48567437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
532-874
               

               
Cow position:
               
chr6:14913985-14914348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
88, 8
               

               
Conread position:
               
532-875
               

               
Cow position:
               
chr6:31846995-31847324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
532-878
               

               
Cow position:
               
chr6:7539823-7539467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
93, 137
               

               
Conread position:
               
533-709
               

               
Cow position:
               
chr6:31928888-31928705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 140
               

               
Conread position:
               
533-710
               

               
Cow position:
               
chr6:14383924-14383744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
533-716
               

               
Cow position:
               
chr6:53811833-53811645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
533-721
               

               
Cow position:
               
chr6:16411862-16411670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
533-741
               

               
Cow position:
               
chr6:21183974-21184185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 139
               

               
Conread position:
               
533-748
               

               
Cow position:
               
chr6:42728895-42728676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
533-785
               

               
Cow position:
               
chr6:21475974-21475720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
533-819
               

               
Cow position:
               
chr6:44623837-44623568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
275, 66
               

               
Conread position:
               
533-825
               

               
Cow position:
               
chr6:65264302-65264583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr6:4469015-4468721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr6:46558301-46558007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr6:61514949-61515238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
533-865
               

               
Cow position:
               
chr6:67187927-67187592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
533-870
               

               
Cow position:
               
chr6:27888592-27888250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
533-875
               

               
Cow position:
               
chr6:45596297-45596642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
264, 78
               

               
Conread position:
               
533-886
               

               
Cow position:
               
chr6:8562964-8562604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
533-887
               

               
Cow position:
               
chr6:18988440-18988095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
265, 62
               

               
Conread position:
               
533-887
               

               
Cow position:
               
chr6:35181005-35181374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 140
               

               
Conread position:
               
534-700
               

               
Cow position:
               
chr6:21175582-21175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
100, 133
               

               
Conread position:
               
534-740
               

               
Cow position:
               
chr6:18440230-18440439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
534-769
               

               
Cow position:
               
chr6:42483664-42483425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
534-804
               

               
Cow position:
               
chr6:53546277-53546013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
109, 87
               

               
Conread position:
               
534-826
               

               
Cow position:
               
chr6:3351276-3350973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
69, 138
               

               
Conread position:
               
534-826
               

               
Cow position:
               
chr6:13565333-13565038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
534-826
               

               
Cow position:
               
chr6:28148510-28148206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
534-856
               

               
Cow position:
               
chr6:24222929-24223236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
276, 70
               

               
Conread position:
               
534-874
               

               
Cow position:
               
chr6:51581007-51581356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
534-886
               

               
Cow position:
               
chr6:46282744-46283116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 148
               

               
Conread position:
               
535-672
               

               
Cow position:
               
chr6:45633748-45633889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
535-703
               

               
Cow position:
               
chr6:34463343-34463512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
535-705
               

               
Cow position:
               
chr6:7291558-7291389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
535-716
               

               
Cow position:
               
chr6:34076410-34076224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
535-723
               

               
Cow position:
               
chr6:68272850-68272658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
535-728
               

               
Cow position:
               
chr6:45159809-45160007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
535-736
               

               
Cow position:
               
chr6:41657513-41657310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 137
               

               
Conread position:
               
535-741
               

               
Cow position:
               
chr6:34569664-34569445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
535-744
               

               
Cow position:
               
chr6:30825532-30825730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
535-752
               

               
Cow position:
               
chr6:60850947-60850726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 135
               

               
Conread position:
               
535-769
               

               
Cow position:
               
chr6:35171861-35171614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
535-793
               

               
Cow position:
               
chr6:8688604-8688862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
535-799
               

               
Cow position:
               
chr6:35318886-35319153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 227
               

               
Conread position:
               
535-806
               

               
Cow position:
               
chr6:47540594-47540871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
535-807
               

               
Cow position:
               
chr6:18903790-18904078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
77, 215
               

               
Conread position:
               
535-807
               

               
Cow position:
               
chr6:47779125-47778848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 134
               

               
Conread position:
               
535-807
               

               
Cow position:
               
chr6:56716055-56715794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 68
               

               
Conread position:
               
535-823
               

               
Cow position:
               
chr6:12965101-12964810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
535-825
               

               
Cow position:
               
chr6:55417286-55417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
103, 81
               

               
Conread position:
               
535-827
               

               
Cow position:
               
chr6:5095295-5095594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
535-827
               

               
Cow position:
               
chr6:23401748-23402037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
90, 132
               

               
Conread position:
               
535-827
               

               
Cow position:
               
chr6:63251675-63251968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
535-870
               

               
Cow position:
               
chr6:15937604-15937950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 138
               

               
Conread position:
               
535-873
               

               
Cow position:
               
chr6:1429882-1429537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
6, 118
               

               
Conread position:
               
535-873
               

               
Cow position:
               
chr6:47520302-47519948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
535-874
               

               
Cow position:
               
chr6:62670117-62669768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr6:899076-899394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
273, 21
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr6:7119385-7119714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 6
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr6:16266976-16266615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 140
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr6:17313984-17313630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
535-875
               

               
Cow position:
               
chr6:53460325-53460676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
535-877
               

               
Cow position:
               
chr6:32122142-32121805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 107
               

               
Conread position:
               
535-886
               

               
Cow position:
               
chr6:10225403-10225755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
85, 141
               

               
Conread position:
               
535-887
               

               
Cow position:
               
chr6:48282242-48281881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 131
               

               
Conread position:
               
536-734
               

               
Cow position:
               
chr6:68246585-68246789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
536-786
               

               
Cow position:
               
chr6:1475583-1475339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
536-802
               

               
Cow position:
               
chr6:69334070-69334332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 127
               

               
Conread position:
               
536-864
               

               
Cow position:
               
chr6:19293044-19292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
536-871
               

               
Cow position:
               
chr6:15300594-15300919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
536-877
               

               
Cow position:
               
chr6:17414205-17414554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
536-877
               

               
Cow position:
               
chr6:28083785-28084117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 100
               

               
Conread position:
               
536-886
               

               
Cow position:
               
chr6:25614844-25615216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
88, 157
               

               
Conread position:
               
536-887
               

               
Cow position:
               
chr6:33206974-33206631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
537-662
               

               
Cow position:
               
chr6:67810743-67810871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
537-709
               

               
Cow position:
               
chr6:59015335-59015504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
537-723
               

               
Cow position:
               
chr6:58697384-58697576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
537-727
               

               
Cow position:
               
chr6:62805889-62805694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
537-734
               

               
Cow position:
               
chr6:45920976-45921169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
537-774
               

               
Cow position:
               
chr6:42035015-42034777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
537-801
               

               
Cow position:
               
chr6:36808958-36809227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
537-834
               

               
Cow position:
               
chr6:53145436-53145737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
537-870
               

               
Cow position:
               
chr6:6063048-6063390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
537-873
               

               
Cow position:
               
chr6:10399663-10400003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 153
               

               
Conread position:
               
537-873
               

               
Cow position:
               
chr6:35726334-35725993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
537-874
               

               
Cow position:
               
chr6:17548723-17549084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
537-874
               

               
Cow position:
               
chr6:60273767-60274109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
537-875
               

               
Cow position:
               
chr6:9219507-9219169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
537-875
               

               
Cow position:
               
chr6:26728300-26728629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
537-878
               

               
Cow position:
               
chr6:22332151-22332499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
537-884
               

               
Cow position:
               
chr6:22850008-22850357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
537-886
               

               
Cow position:
               
chr6:50090889-50090530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
537-887
               

               
Cow position:
               
chr6:38441425-38441061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
540-710
               

               
Cow position:
               
chr6:34423218-34423390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
540-777
               

               
Cow position:
               
chr6:66839435-66839198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
540-788
               

               
Cow position:
               
chr6:68046924-68047158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 72
               

               
Conread position:
               
540-824
               

               
Cow position:
               
chr6:51529948-51530230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
540-873
               

               
Cow position:
               
chr6:57545987-57546316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
540-875
               

               
Cow position:
               
chr6:59602973-59603311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
540-875
               

               
Cow position:
               
chr6:60819757-60819411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
540-886
               

               
Cow position:
               
chr6:1704036-1703702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
541-718
               

               
Cow position:
               
chr6:37994445-37994269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
541-722
               

               
Cow position:
               
chr6:26408261-26408448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 132
               

               
Conread position:
               
541-730
               

               
Cow position:
               
chr6:63168522-63168715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 133
               

               
Conread position:
               
541-744
               

               
Cow position:
               
chr6:41226606-41226794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
541-744
               

               
Cow position:
               
chr6:51933780-51933589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
541-814
               

               
Cow position:
               
chr6:19259117-19259377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
541-826
               

               
Cow position:
               
chr6:23024857-23025159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
541-848
               

               
Cow position:
               
chr6:6060333-6060640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
541-860
               

               
Cow position:
               
chr6:37332352-37332018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
541-864
               

               
Cow position:
               
chr6:49421555-49421876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
541-874
               

               
Cow position:
               
chr6:56850258-56849909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
84, 130
               

               
Conread position:
               
541-875
               

               
Cow position:
               
chr6:21535281-21534951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
76, 130
               

               
Conread position:
               
541-875
               

               
Cow position:
               
chr6:65871272-65870924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
541-887
               

               
Cow position:
               
chr6:10613071-10612744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
244, 68
               

               
Conread position:
               
541-887
               

               
Cow position:
               
chr6:53024570-53024911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 85
               

               
Conread position:
               
543-807
               

               
Cow position:
               
chr6:63066076-63065799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 135
               

               
Conread position:
               
543-875
               

               
Cow position:
               
chr6:611782-611458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 121
               

               
Conread position:
               
543-876
               

               
Cow position:
               
chr6:32866982-32867311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
543-887
               

               
Cow position:
               
chr6:7128165-7128517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
549-731
               

               
Cow position:
               
chr6:410986-411166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
549-866
               

               
Cow position:
               
chr6:60118375-60118053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 65
               

               
Conread position:
               
549-870
               

               
Cow position:
               
chr6:38771504-38771187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 84
               

               
Conread position:
               
550-728
               

               
Cow position:
               
chr6:34721879-34722054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
550-729
               

               
Cow position:
               
chr6:35984902-35985087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
70, 123
               

               
Conread position:
               
550-734
               

               
Cow position:
               
chr6:19563247-19563439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
550-740
               

               
Cow position:
               
chr6:8186955-8187152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
550-741
               

               
Cow position:
               
chr6:44543915-44544110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
550-763
               

               
Cow position:
               
chr6:28088815-28089032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
550-782
               

               
Cow position:
               
chr6:23453875-23453651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
550-784
               

               
Cow position:
               
chr6:55296860-55297098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
70, 226
               

               
Conread position:
               
550-786
               

               
Cow position:
               
chr6:12928372-12928142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
115, 82
               

               
Conread position:
               
550-788
               

               
Cow position:
               
chr6:37827715-37827962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
550-806
               

               
Cow position:
               
chr6:57089436-57089172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
75, 120
               

               
Conread position:
               
550-807
               

               
Cow position:
               
chr6:41014742-41015002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
550-825
               

               
Cow position:
               
chr6:19045860-19045581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 119
               

               
Conread position:
               
550-826
               

               
Cow position:
               
chr6:581508-581790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
70, 175
               

               
Conread position:
               
550-826
               

               
Cow position:
               
chr6:16700486-16700219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
257, 83
               

               
Conread position:
               
550-827
               

               
Cow position:
               
chr6:7628201-7627915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
550-827
               

               
Cow position:
               
chr6:47959037-47958769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
550-849
               

               
Cow position:
               
chr6:5330646-5330336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
550-850
               

               
Cow position:
               
chr6:62437649-62437344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
550-873
               

               
Cow position:
               
chr6:34251066-34251393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
550-874
               

               
Cow position:
               
chr6:34475326-34475655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
550-874
               

               
Cow position:
               
chr6:58304644-58304337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:4559071-4559409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:19402077-19401752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
192, 113
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:19996847-19996514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 113
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:48010292-48010625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 156
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:54035908-54036239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:54854482-54854145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
550-875
               

               
Cow position:
               
chr6:61631376-61631713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
550-884
               

               
Cow position:
               
chr6:18080284-18080622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 159
               

               
Conread position:
               
550-886
               

               
Cow position:
               
chr6:11247000-11246647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
550-887
               

               
Cow position:
               
chr6:3952753-3952401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
551-734
               

               
Cow position:
               
chr6:50883447-50883633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
551-767
               

               
Cow position:
               
chr6:57079657-57079435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
551-824
               

               
Cow position:
               
chr6:16102961-16103238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
551-826
               

               
Cow position:
               
chr6:59438230-59438494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
551-827
               

               
Cow position:
               
chr6:24339520-24339236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
30, 197
               

               
Conread position:
               
551-827
               

               
Cow position:
               
chr6:41376001-41375723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 156
               

               
Conread position:
               
551-850
               

               
Cow position:
               
chr6:28559771-28559463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
551-866
               

               
Cow position:
               
chr6:44867315-44867636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
551-870
               

               
Cow position:
               
chr6:21456446-21456787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 212
               

               
Conread position:
               
551-875
               

               
Cow position:
               
chr6:14949260-14949583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
551-875
               

               
Cow position:
               
chr6:46859939-46860268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
551-875
               

               
Cow position:
               
chr6:64432164-64431835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
551-887
               

               
Cow position:
               
chr6:66434185-66433827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 133
               

               
Conread position:
               
552-659
               

               
Cow position:
               
chr6:60674061-60673951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
552-671
               

               
Cow position:
               
chr6:59759399-59759276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 117
               

               
Conread position:
               
552-679
               

               
Cow position:
               
chr6:62849151-62849025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
552-687
               

               
Cow position:
               
chr6:11262971-11262838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
552-688
               

               
Cow position:
               
chr6:21346923-21347060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
552-693
               

               
Cow position:
               
chr6:43770672-43770813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
552-703
               

               
Cow position:
               
chr6:38033088-38032933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
552-706
               

               
Cow position:
               
chr6:4699935-4699780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
552-707
               

               
Cow position:
               
chr6:48278665-48278817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
552-709
               

               
Cow position:
               
chr6:63182515-63182358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
78, 115
               

               
Conread position:
               
552-711
               

               
Cow position:
               
chr6:4323552-4323397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
552-717
               

               
Cow position:
               
chr6:21350801-21350971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
552-719
               

               
Cow position:
               
chr6:15974293-15974464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
552-726
               

               
Cow position:
               
chr6:59297275-59297105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
552-734
               

               
Cow position:
               
chr6:36537133-36537316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
552-737
               

               
Cow position:
               
chr6:36225340-36225150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
552-741
               

               
Cow position:
               
chr6:21083311-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
552-748
               

               
Cow position:
               
chr6:23938281-23938091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
552-748
               

               
Cow position:
               
chr6:42118922-42118733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
552-750
               

               
Cow position:
               
chr6:15172786-15172595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 50
               

               
Conread position:
               
552-755
               

               
Cow position:
               
chr6:16091127-16090927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
552-757
               

               
Cow position:
               
chr6:50771131-50771337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
552-765
               

               
Cow position:
               
chr6:54127591-54127799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 107
               

               
Conread position:
               
552-771
               

               
Cow position:
               
chr6:9832427-9832214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
552-771
               

               
Cow position:
               
chr6:30024107-30023893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
552-774
               

               
Cow position:
               
chr6:21470202-21470424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
552-777
               

               
Cow position:
               
chr6:58725597-58725372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
552-777
               

               
Cow position:
               
chr6:61110012-61109789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
552-782
               

               
Cow position:
               
chr6:67069585-67069818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
552-785
               

               
Cow position:
               
chr6:47246012-47245778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
552-788
               

               
Cow position:
               
chr6:48379381-48379622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 121
               

               
Conread position:
               
552-795
               

               
Cow position:
               
chr6:32453619-32453373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
552-802
               

               
Cow position:
               
chr6:67451434-67451667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
552-803
               

               
Cow position:
               
chr6:21293268-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
552-806
               

               
Cow position:
               
chr6:50504686-50504429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
552-808
               

               
Cow position:
               
chr6:62056841-62056586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
552-808
               

               
Cow position:
               
chr6:68685770-68685528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 60
               

               
Conread position:
               
552-811
               

               
Cow position:
               
chr6:48097373-48097631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
552-813
               

               
Cow position:
               
chr6:1941604-1941869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
552-813
               

               
Cow position:
               
chr6:41655825-41656075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
193, 59
               

               
Conread position:
               
552-816
               

               
Cow position:
               
chr6:2899354-2899607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
552-818
               

               
Cow position:
               
chr6:66570655-66570399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
552-825
               

               
Cow position:
               
chr6:54490516-54490780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 79
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:9302493-9302762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:21004910-21004627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:22985632-22985905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
256, 80
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:24781321-24781603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 169
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:32268657-32268923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:39093975-39093689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
552-827
               

               
Cow position:
               
chr6:60143969-60144246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 117
               

               
Conread position:
               
552-862
               

               
Cow position:
               
chr6:35436217-35435904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
256, 63
               

               
Conread position:
               
552-862
               

               
Cow position:
               
chr6:61269547-61269219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
552-866
               

               
Cow position:
               
chr6:29485313-29484995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
552-870
               

               
Cow position:
               
chr6:53841273-53841598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
552-873
               

               
Cow position:
               
chr6:15243069-15242734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
552-873
               

               
Cow position:
               
chr6:19446483-19446157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
552-873
               

               
Cow position:
               
chr6:32287861-32287536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
552-874
               

               
Cow position:
               
chr6:58370977-58370650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 115
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:5609212-5609544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 126
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:17997087-17997419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:21061661-21061996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:24468169-24468497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:29210707-29210395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
176, 59
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:31564122-31564442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
256, 38
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:36470348-36470672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:38640461-38640127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:39358113-39358447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:44566656-44566312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 194
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:47356056-47355720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:55282062-55282390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:57404906-57405233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
192, 71
               

               
Conread position:
               
552-875
               

               
Cow position:
               
chr6:65903396-65903721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
552-878
               

               
Cow position:
               
chr6:36203051-36202721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
552-878
               

               
Cow position:
               
chr6:36652629-36652312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
257, 46
               

               
Conread position:
               
552-886
               

               
Cow position:
               
chr6:9736415-9736758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 169
               

               
Conread position:
               
552-886
               

               
Cow position:
               
chr6:26450529-26450205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
256, 14
               

               
Conread position:
               
552-886
               

               
Cow position:
               
chr6:36196432-36196098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
552-886
               

               
Cow position:
               
chr6:36645604-36645273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
219, 60
               

               
Conread position:
               
552-887
               

               
Cow position:
               
chr6:2547491-2547129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 128
               

               
Conread position:
               
552-887
               

               
Cow position:
               
chr6:37149412-37149072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
552-887
               

               
Cow position:
               
chr6:46466048-46465707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 115
               

               
Conread position:
               
552-887
               

               
Cow position:
               
chr6:67574620-67574290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
553-723
               

               
Cow position:
               
chr6:32006227-32006399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
553-752
               

               
Cow position:
               
chr6:1866960-1866758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
553-807
               

               
Cow position:
               
chr6:22525554-22525307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
553-813
               

               
Cow position:
               
chr6:8094057-8094324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
553-824
               

               
Cow position:
               
chr6:22215233-22215512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
553-826
               

               
Cow position:
               
chr6:19754849-19755122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
553-827
               

               
Cow position:
               
chr6:7189902-7190166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 12
               

               
Conread position:
               
553-827
               

               
Cow position:
               
chr6:18608581-18608862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
553-827
               

               
Cow position:
               
chr6:33510018-33509743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
553-827
               

               
Cow position:
               
chr6:60468460-60468190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
553-875
               

               
Cow position:
               
chr6:10039955-10039617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
553-875
               

               
Cow position:
               
chr6:47575120-47574801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
255, 47
               

               
Conread position:
               
553-875
               

               
Cow position:
               
chr6:60740239-60739911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
553-877
               

               
Cow position:
               
chr6:23696223-23695888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
553-887
               

               
Cow position:
               
chr6:24004749-24004426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
273, 58
               

               
Conread position:
               
554-705
               

               
Cow position:
               
chr6:8726905-8726751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
554-718
               

               
Cow position:
               
chr6:58173570-58173410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
554-722
               

               
Cow position:
               
chr6:36939102-36938924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
554-734
               

               
Cow position:
               
chr6:15058603-15058421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
554-762
               

               
Cow position:
               
chr6:12623737-12623532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
554-777
               

               
Cow position:
               
chr6:29775846-29775623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
554-795
               

               
Cow position:
               
chr6:27219394-27219165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
554-801
               

               
Cow position:
               
chr6:42567724-42567472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
554-826
               

               
Cow position:
               
chr6:693917-694193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 218
               

               
Conread position:
               
554-827
               

               
Cow position:
               
chr6:10105755-10106024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
554-827
               

               
Cow position:
               
chr6:18117823-18118099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
554-828
               

               
Cow position:
               
chr6:2078588-2078868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
554-842
               

               
Cow position:
               
chr6:56986420-56986707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
554-852
               

               
Cow position:
               
chr6:46173030-46173333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 174
               

               
Conread position:
               
554-862
               

               
Cow position:
               
chr6:6965167-6965482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
554-866
               

               
Cow position:
               
chr6:24031591-24031284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
220, 57
               

               
Conread position:
               
554-870
               

               
Cow position:
               
chr6:19264273-19264595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
554-871
               

               
Cow position:
               
chr6:17794527-17794856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
554-874
               

               
Cow position:
               
chr6:15243487-15243153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
554-874
               

               
Cow position:
               
chr6:21231740-21231428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 72
               

               
Conread position:
               
554-874
               

               
Cow position:
               
chr6:46292127-46292447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
254, 94
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:6264880-6264539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:15446965-15447308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:17557603-17557277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 63
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:38207258-38207595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:38610202-38609864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
93, 219
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:38853428-38853758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:43134713-43135048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:49398401-49398718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
228, 79
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:50577743-50577420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
554-875
               

               
Cow position:
               
chr6:67951185-67950849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
554-876
               

               
Cow position:
               
chr6:4383702-4383381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
554-878
               

               
Cow position:
               
chr6:23532874-23532559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
273, 32
               

               
Conread position:
               
554-886
               

               
Cow position:
               
chr6:34195934-34196266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 57
               

               
Conread position:
               
554-887
               

               
Cow position:
               
chr6:54365101-54365449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 79
               

               
Conread position:
               
555-702
               

               
Cow position:
               
chr6:2758009-2757861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 112
               

               
Conread position:
               
555-707
               

               
Cow position:
               
chr6:54406576-54406727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
555-723
               

               
Cow position:
               
chr6:34380589-34380759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
555-733
               

               
Cow position:
               
chr6:47022786-47022606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
555-800
               

               
Cow position:
               
chr6:10189989-10189760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
555-807
               

               
Cow position:
               
chr6:67451145-67451398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
555-867
               

               
Cow position:
               
chr6:63047803-63047481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
213, 58
               

               
Conread position:
               
555-873
               

               
Cow position:
               
chr6:41733862-41733523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
555-875
               

               
Cow position:
               
chr6:15305798-15305477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 118
               

               
Conread position:
               
555-875
               

               
Cow position:
               
chr6:31535346-31535671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
555-875
               

               
Cow position:
               
chr6:54133038-54132713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
555-886
               

               
Cow position:
               
chr6:17090808-17090483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
208, 57
               

               
Conread position:
               
556-686
               

               
Cow position:
               
chr6:7169904-7170028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
556-703
               

               
Cow position:
               
chr6:40682442-40682590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
556-734
               

               
Cow position:
               
chr6:53711629-53711447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
556-775
               

               
Cow position:
               
chr6:26155373-26155153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
556-825
               

               
Cow position:
               
chr6:37395177-37395453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
556-827
               

               
Cow position:
               
chr6:143152-143416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
556-827
               

               
Cow position:
               
chr6:68816396-68816119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
556-837
               

               
Cow position:
               
chr6:2585167-2584883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
556-866
               

               
Cow position:
               
chr6:48803414-48803731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
556-875
               

               
Cow position:
               
chr6:5113821-5114149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
556-875
               

               
Cow position:
               
chr6:12338216-12337880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
556-875
               

               
Cow position:
               
chr6:44194330-44194646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
556-878
               

               
Cow position:
               
chr6:45388547-45388223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
556-879
               

               
Cow position:
               
chr6:21587208-21587525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
557-744
               

               
Cow position:
               
chr6:12761505-12761314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
557-759
               

               
Cow position:
               
chr6:37466302-37466110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
557-873
               

               
Cow position:
               
chr6:45690393-45690691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
557-875
               

               
Cow position:
               
chr6:47305567-47305235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
557-876
               

               
Cow position:
               
chr6:51835623-51835292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
558-866
               

               
Cow position:
               
chr6:63720416-63720100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
217, 61
               

               
Conread position:
               
559-814
               

               
Cow position:
               
chr6:34119140-34119387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
217, 52
               

               
Conread position:
               
559-827
               

               
Cow position:
               
chr6:51294490-51294236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
251, 51
               

               
Conread position:
               
559-870
               

               
Cow position:
               
chr6:27239781-27240105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 184
               

               
Conread position:
               
559-874
               

               
Cow position:
               
chr6:13687593-13687915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
560-772
               

               
Cow position:
               
chr6:1870975-1871191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
560-807
               

               
Cow position:
               
chr6:57287449-57287685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
563-825
               

               
Cow position:
               
chr6:9718698-9718965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
563-827
               

               
Cow position:
               
chr6:19696028-19695760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
563-861
               

               
Cow position:
               
chr6:35990020-35990323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
563-875
               

               
Cow position:
               
chr6:9008407-9008715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
245, 48
               

               
Conread position:
               
563-875
               

               
Cow position:
               
chr6:35842879-35842546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
563-883
               

               
Cow position:
               
chr6:4691746-4692092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
563-887
               

               
Cow position:
               
chr6:33450758-33451057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
563-887
               

               
Cow position:
               
chr6:52413081-52412743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
565-692
               

               
Cow position:
               
chr6:53235436-53235566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 105
               

               
Conread position:
               
565-827
               

               
Cow position:
               
chr6:445545-445274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
565-827
               

               
Cow position:
               
chr6:21736685-21736935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
244, 48
               

               
Conread position:
               
566-835
               

               
Cow position:
               
chr6:36920759-36921029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
566-870
               

               
Cow position:
               
chr6:38641710-38641395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
566-877
               

               
Cow position:
               
chr6:8125545-8125222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
568-716
               

               
Cow position:
               
chr6:5600656-5600798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
569-875
               

               
Cow position:
               
chr6:26915541-26915225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
570-827
               

               
Cow position:
               
chr6:17954035-17954296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 88
               

               
Conread position:
               
571-734
               

               
Cow position:
               
chr6:24491245-24491073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
571-826
               

               
Cow position:
               
chr6:67643478-67643737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
573-840
               

               
Cow position:
               
chr6:40774125-40774405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
573-887
               

               
Cow position:
               
chr6:50984434-50984109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
574-849
               

               
Cow position:
               
chr6:48469219-48468938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 209
               

               
Conread position:
               
575-822
               

               
Cow position:
               
chr6:7801188-7801436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
577-864
               

               
Cow position:
               
chr6:61523999-61524294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
580-859
               

               
Cow position:
               
chr6:6067502-6067780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
580-875
               

               
Cow position:
               
chr6:57571680-57571373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
581-827
               

               
Cow position:
               
chr6:31078667-31078919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
581-827
               

               
Cow position:
               
chr6:67282092-67281850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
582-873
               

               
Cow position:
               
chr6:20097765-20098066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
585-875
               

               
Cow position:
               
chr6:8637474-8637171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
586-777
               

               
Cow position:
               
chr6:61576010-61575828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
586-827
               

               
Cow position:
               
chr6:2623963-2623735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
220, 78
               

               
Conread position:
               
586-827
               

               
Cow position:
               
chr6:16352167-16352394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
217, 47
               

               
Conread position:
               
586-875
               

               
Cow position:
               
chr6:40713313-40713605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
587-876
               

               
Cow position:
               
chr6:16191859-16191564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
587-886
               

               
Cow position:
               
chr6:21590900-21590577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
589-886
               

               
Cow position:
               
chr6:528098-528389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
592-827
               

               
Cow position:
               
chr6:68652162-68652400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
595-827
               

               
Cow position:
               
chr6:36284429-36284195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
596-874
               

               
Cow position:
               
chr6:48112382-48112096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
599-827
               

               
Cow position:
               
chr6:10487765-10487540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
605-827
               

               
Cow position:
               
chr6:51969248-51969020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
605-866
               

               
Cow position:
               
chr6:66375162-66375425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
199, 58
               

               
Conread position:
               
605-875
               

               
Cow position:
               
chr6:582099-582375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
609-807
               

               
Cow position:
               
chr6:51086238-51086045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
609-827
               

               
Cow position:
               
chr6:35993751-35993539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
609-870
               

               
Cow position:
               
chr6:16764476-16764751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
609-874
               

               
Cow position:
               
chr6:8209436-8209694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
609-874
               

               
Cow position:
               
chr6:25407222-25407495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
609-875
               

               
Cow position:
               
chr6:51463466-51463716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
609-887
               

               
Cow position:
               
chr6:54867687-54867395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
612-800
               

               
Cow position:
               
chr6:59301623-59301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
612-807
               

               
Cow position:
               
chr6:46331085-46330894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
612-866
               

               
Cow position:
               
chr6:3592564-3592306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
612-866
               

               
Cow position:
               
chr6:21235210-21234949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
612-866
               

               
Cow position:
               
chr6:37783567-37783323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
612-870
               

               
Cow position:
               
chr6:6098103-6098383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
612-875
               

               
Cow position:
               
chr6:14958179-14958449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
614-767
               

               
Cow position:
               
chr6:1002098-1002251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
614-776
               

               
Cow position:
               
chr6:7568288-7568126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
614-826
               

               
Cow position:
               
chr6:18144362-18144147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
614-827
               

               
Cow position:
               
chr6:18048855-18049071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
614-827
               

               
Cow position:
               
chr6:37199373-37199577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
194, 54
               

               
Conread position:
               
614-827
               

               
Cow position:
               
chr6:63298869-63299079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
197, 43
               

               
Conread position:
               
614-874
               

               
Cow position:
               
chr6:6401115-6400850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
614-875
               

               
Cow position:
               
chr6:66531659-66531925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
614-878
               

               
Cow position:
               
chr6:47339191-47339459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
614-886
               

               
Cow position:
               
chr6:47799458-47799175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
615-875
               

               
Cow position:
               
chr6:66131468-66131199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
616-877
               

               
Cow position:
               
chr6:58597343-58597610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
617-788
               

               
Cow position:
               
chr6:67805853-67806025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
617-803
               

               
Cow position:
               
chr6:53090170-53089986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
617-875
               

               
Cow position:
               
chr6:60057497-60057760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
191, 24
               

               
Conread position:
               
617-881
               

               
Cow position:
               
chr6:35103166-35103441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
618-873
               

               
Cow position:
               
chr6:67214910-67214642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
618-875
               

               
Cow position:
               
chr6:58590431-58590174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
618-886
               

               
Cow position:
               
chr6:59069459-59069740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
620-870
               

               
Cow position:
               
chr6:6343588-6343327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
620-874
               

               
Cow position:
               
chr6:21869490-21869751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
620-875
               

               
Cow position:
               
chr6:54573419-54573139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
621-887
               

               
Cow position:
               
chr6:9750899-9751161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
622-859
               

               
Cow position:
               
chr6:54990844-54991091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
622-870
               

               
Cow position:
               
chr6:377288-377030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
623-827
               

               
Cow position:
               
chr6:12845529-12845338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
623-864
               

               
Cow position:
               
chr6:28976884-28977128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
623-866
               

               
Cow position:
               
chr6:42565843-42565593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
623-875
               

               
Cow position:
               
chr6:19681369-19681627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
626-864
               

               
Cow position:
               
chr6:19013216-19012972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
626-875
               

               
Cow position:
               
chr6:66874499-66874247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
182, 26
               

               
Conread position:
               
627-875
               

               
Cow position:
               
chr6:31526195-31525948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
632-875
               

               
Cow position:
               
chr6:47640288-47640537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 35
               

               
Conread position:
               
633-823
               

               
Cow position:
               
chr6:16707155-16706968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 34
               

               
Conread position:
               
635-873
               

               
Cow position:
               
chr6:20196162-20196395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
193, 33
               

               
Conread position:
               
635-873
               

               
Cow position:
               
chr6:38218807-38218570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
635-875
               

               
Cow position:
               
chr6:12551410-12551166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
110, 32
               

               
Conread position:
               
635-875
               

               
Cow position:
               
chr6:60350151-60350399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
635-886
               

               
Cow position:
               
chr6:4864406-4864663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
635-886
               

               
Cow position:
               
chr6:49002599-49002849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
635-887
               

               
Cow position:
               
chr6:8787896-8788154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
635-887
               

               
Cow position:
               
chr6:16423842-16423582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
178, 34
               

               
Conread position:
               
635-888
               

               
Cow position:
               
chr6:7130739-7130999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
636-825
               

               
Cow position:
               
chr6:32853327-32853141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
172, 28
               

               
Conread position:
               
636-870
               

               
Cow position:
               
chr6:52901377-52901135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
637-859
               

               
Cow position:
               
chr6:6673246-6673014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
637-870
               

               
Cow position:
               
chr6:50976187-50975959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
186, 15
               

               
Conread position:
               
637-874
               

               
Cow position:
               
chr6:38614951-38614716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
639-825
               

               
Cow position:
               
chr6:33929410-33929595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
164, 25
               

               
Conread position:
               
640-875
               

               
Cow position:
               
chr6:23247830-23248063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
649-875
               

               
Cow position:
               
chr6:31635557-31635793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
649-875
               

               
Cow position:
               
chr6:61608639-61608407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
651-866
               

               
Cow position:
               
chr6:28318522-28318309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
654-861
               

               
Cow position:
               
chr6:60673687-60673479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
669-875
               

               
Cow position:
               
chr6:12542820-12543037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
670-875
               

               
Cow position:
               
chr6:30974151-30973948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
138, 41
               

               
Conread position:
               
670-877
               

               
Cow position:
               
chr6:58074157-58073942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 48
               

               
Conread position:
               
671-877
               

               
Cow position:
               
chr6:59508464-59508253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
673-875
               

               
Cow position:
               
chr6:130057-130265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
155, 45
               

               
Conread position:
               
673-876
               

               
Cow position:
               
chr6:54600454-54600250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
136, 98
               

               
Conread position:
               
680-827
               

               
Cow position:
               
chr6:54364893-54365050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
681-887
               

               
Cow position:
               
chr6:62924898-62925114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
684-873
               

               
Cow position:
               
chr6:52248037-52248233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
687-887
               

               
Cow position:
               
chr6:67968518-67968725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
688-884
               

               
Cow position:
               
chr6:59109036-59108828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
120, 77
               

               
Conread position:
               
688-886
               

               
Cow position:
               
chr6:12829134-12829338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
713-874
               

               
Cow position:
               
chr6:38234025-38233855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
713-875
               

               
Cow position:
               
chr6:5445689-5445521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
716-875
               

               
Cow position:
               
chr6:61137438-61137271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
722-873
               

               
Cow position:
               
chr6:25773328-25773485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
728-863
               

               
Cow position:
               
chr6:60456880-60456739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               
Show alignments to all cow chromosomes.