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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8019O09.5
        

               
Conread position:
               
41-378
               

               
Cow position:
               
chr5:20017804-20017469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
52-381
               

               
Cow position:
               
chr5:53185391-53185064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 20
               

               
Conread position:
               
53-231
               

               
Cow position:
               
chr5:26135157-26134979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
53-237
               

               
Cow position:
               
chr5:47871997-47871813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr5:24643759-24643564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 86
               

               
Conread position:
               
53-250
               

               
Cow position:
               
chr5:35180240-35180437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-250
               

               
Cow position:
               
chr5:37384424-37384227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
53-253
               

               
Cow position:
               
chr5:60446543-60446743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 163
               

               
Conread position:
               
53-271
               

               
Cow position:
               
chr5:46707748-46707965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
53-297
               

               
Cow position:
               
chr5:50923733-50923491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
53-320
               

               
Cow position:
               
chr5:32810915-32810652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 133
               

               
Conread position:
               
53-322
               

               
Cow position:
               
chr5:39749331-39749047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
53-350
               

               
Cow position:
               
chr5:29763022-29763315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr5:6219055-6219363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 101
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr5:12921509-12921814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 95
               

               
Conread position:
               
53-359
               

               
Cow position:
               
chr5:46735166-46734861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 252
               

               
Conread position:
               
53-365
               

               
Cow position:
               
chr5:8178245-8178558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr5:3501017-3500694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 252
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr5:3544419-3544733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 75
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr5:19978803-19978476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 200
               

               
Conread position:
               
53-379
               

               
Cow position:
               
chr5:10254678-10254993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 112
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:280068-279741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 28
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:2976897-2977226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 76
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:5682400-5682066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:21189332-21189656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 92
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:29742450-29742119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 0
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:42283281-42283602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 102
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:44709261-44708933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:46676724-46677049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 0
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:55722640-55722968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-380
               

               
Cow position:
               
chr5:64778891-64778565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 303
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:60036-59698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 134
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:1338810-1338484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 252
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:3789339-3789663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:4388287-4388621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 133
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:6151721-6151392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:7175409-7175738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:7498874-7498545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:10921956-10922285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:14551490-14551160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:14558347-14558015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 283
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:14636467-14636139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 34
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:18558297-18557978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 76
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:23353851-23354184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:30582437-30582765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 224
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:34708880-34709209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:41391839-41392162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 205
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:43437831-43437503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 291
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:47342984-47343314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:47560450-47560120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:48805350-48805030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 112
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:49117240-49116911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:49521810-49522141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 256
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr5:55631175-55631504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
53-382
               

               
Cow position:
               
chr5:5715975-5715648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
53-386
               

               
Cow position:
               
chr5:7042353-7042674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
57-379
               

               
Cow position:
               
chr5:43984199-43984522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 0
               

               
Conread position:
               
60-380
               

               
Cow position:
               
chr5:40262355-40262044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 173
               

               
Conread position:
               
61-292
               

               
Cow position:
               
chr5:58353324-58353556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
62-381
               

               
Cow position:
               
chr5:31916735-31917039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr5:75755696-75755982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 49
               

               
Conread position:
               
64-377
               

               
Cow position:
               
chr5:72398751-72399055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
64-380
               

               
Cow position:
               
chr5:67618420-67618740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr5:16207037-16206719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 105
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr5:28016178-28016496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 189
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr5:59268541-59268859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 8
               

               
Conread position:
               
65-277
               

               
Cow position:
               
chr5:15477838-15478043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
65-335
               

               
Cow position:
               
chr5:27195939-27195669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr5:40270721-40270437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
65-362
               

               
Cow position:
               
chr5:58199133-58199430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 50
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr5:28375376-28375069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
65-378
               

               
Cow position:
               
chr5:49070690-49070378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
65-380
               

               
Cow position:
               
chr5:13852423-13852755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
65-380
               

               
Cow position:
               
chr5:48026391-48026707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 0
               

               
Conread position:
               
65-380
               

               
Cow position:
               
chr5:58192041-58192354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 50
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr5:56442383-56442696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 7
               

               
Conread position:
               
65-389
               

               
Cow position:
               
chr5:27178760-27179082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 7
               

               
Conread position:
               
66-204
               

               
Cow position:
               
chr5:46650222-46650359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
66-358
               

               
Cow position:
               
chr5:7396374-7396660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 9
               

               
Conread position:
               
66-373
               

               
Cow position:
               
chr5:28678329-28678017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr5:29674333-29674657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr5:41228924-41228610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 67
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr5:41547882-41547580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 63
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr5:46797029-46797337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
66-380
               

               
Cow position:
               
chr5:62436247-62436558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 130
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr5:18491526-18491852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr5:18703303-18702999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr5:55985772-55986076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 105
               

               
Conread position:
               
66-383
               

               
Cow position:
               
chr5:6671047-6670738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
67-249
               

               
Cow position:
               
chr5:17645957-17645775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-250
               

               
Cow position:
               
chr5:27063117-27062931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
68-241
               

               
Cow position:
               
chr5:8529775-8529944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
68-259
               

               
Cow position:
               
chr5:32992725-32992918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
68-263
               

               
Cow position:
               
chr5:47471521-47471717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
68-338
               

               
Cow position:
               
chr5:41603406-41603674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
68-352
               

               
Cow position:
               
chr5:62384504-62384792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
226, 206
               

               
Conread position:
               
68-353
               

               
Cow position:
               
chr5:28947285-28946999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
152, 182
               

               
Conread position:
               
68-359
               

               
Cow position:
               
chr5:51684486-51684202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 7
               

               
Conread position:
               
68-368
               

               
Cow position:
               
chr5:42676369-42676662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 184
               

               
Conread position:
               
68-378
               

               
Cow position:
               
chr5:21220706-21220395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 177
               

               
Conread position:
               
68-379
               

               
Cow position:
               
chr5:6901643-6901334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 135
               

               
Conread position:
               
68-379
               

               
Cow position:
               
chr5:49755186-49754889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
68-379
               

               
Cow position:
               
chr5:51070312-51070619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:1344763-1344452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 47
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:40357817-40357530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
288, 105
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:40928901-40928587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 267
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:54088842-54089127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:62204619-62204913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
236, 8
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:70348529-70348847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 168
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:70771277-70771572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
68-380
               

               
Cow position:
               
chr5:75008936-75008632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
68-381
               

               
Cow position:
               
chr5:6840056-6839740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
68-381
               

               
Cow position:
               
chr5:31560379-31560681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
68-381
               

               
Cow position:
               
chr5:62377493-62377797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 61
               

               
Conread position:
               
69-341
               

               
Cow position:
               
chr5:64958655-64958380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
69-378
               

               
Cow position:
               
chr5:41648555-41648861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
288, 40
               

               
Conread position:
               
69-380
               

               
Cow position:
               
chr5:32164801-32164499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
287, 40
               

               
Conread position:
               
69-380
               

               
Cow position:
               
chr5:55358278-55358589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
69-380
               

               
Cow position:
               
chr5:62143834-62143523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
69-381
               

               
Cow position:
               
chr5:34285358-34285050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 176
               

               
Conread position:
               
70-379
               

               
Cow position:
               
chr5:26058249-26058555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
70-380
               

               
Cow position:
               
chr5:29256086-29255775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 0
               

               
Conread position:
               
71-240
               

               
Cow position:
               
chr5:57927020-57926849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
71-379
               

               
Cow position:
               
chr5:31503273-31503589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
71-385
               

               
Cow position:
               
chr5:34527696-34527998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 88
               

               
Conread position:
               
72-175
               

               
Cow position:
               
chr5:38848455-38848352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-213
               

               
Cow position:
               
chr5:71738242-71738382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
72-221
               

               
Cow position:
               
chr5:24632909-24632760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-225
               

               
Cow position:
               
chr5:24159065-24159218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-225
               

               
Cow position:
               
chr5:36906932-36906779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-242
               

               
Cow position:
               
chr5:16100427-16100261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
72-242
               

               
Cow position:
               
chr5:17387287-17387119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
72-250
               

               
Cow position:
               
chr5:47081323-47081502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
72-250
               

               
Cow position:
               
chr5:73444530-73444706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
72-263
               

               
Cow position:
               
chr5:29223135-29222944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-279
               

               
Cow position:
               
chr5:21785221-21785010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 199
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr5:59146507-59146727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
72-291
               

               
Cow position:
               
chr5:12558451-12558228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 80
               

               
Conread position:
               
72-297
               

               
Cow position:
               
chr5:3441468-3441696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
72-300
               

               
Cow position:
               
chr5:71456916-71456691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
87, 93
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr5:4328418-4328640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
72-307
               

               
Cow position:
               
chr5:22555253-22555483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
72-313
               

               
Cow position:
               
chr5:6585323-6585082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 9
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr5:40791965-40792205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
72-319
               

               
Cow position:
               
chr5:30294438-30294674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
72-319
               

               
Cow position:
               
chr5:64845138-64844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
72-321
               

               
Cow position:
               
chr5:12337404-12337652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
72-321
               

               
Cow position:
               
chr5:41488800-41489048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
72-325
               

               
Cow position:
               
chr5:12212663-12212917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
72-335
               

               
Cow position:
               
chr5:70607434-70607691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
72-342
               

               
Cow position:
               
chr5:47854957-47855226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
72-346
               

               
Cow position:
               
chr5:54136508-54136233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
72-352
               

               
Cow position:
               
chr5:41523861-41523578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
72-353
               

               
Cow position:
               
chr5:38738160-38738437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
72-353
               

               
Cow position:
               
chr5:75848378-75848649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
178, 72
               

               
Conread position:
               
72-354
               

               
Cow position:
               
chr5:14654695-14654399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
110, 245
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr5:1780448-1780177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr5:35446486-35446226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr5:40897222-40896937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 149
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr5:49912134-49912422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
72-358
               

               
Cow position:
               
chr5:28026530-28026798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
72-358
               

               
Cow position:
               
chr5:37735506-37735792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 117
               

               
Conread position:
               
72-359
               

               
Cow position:
               
chr5:18667437-18667725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-362
               

               
Cow position:
               
chr5:10066420-10066129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-363
               

               
Cow position:
               
chr5:26073656-26073366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 29
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr5:27006779-27007069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 43
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr5:30301982-30302257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr5:67813992-67814287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-368
               

               
Cow position:
               
chr5:23845425-23845127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
72-369
               

               
Cow position:
               
chr5:67654456-67654753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
72-372
               

               
Cow position:
               
chr5:41548416-41548121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
72-373
               

               
Cow position:
               
chr5:9002980-9002679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 191
               

               
Conread position:
               
72-373
               

               
Cow position:
               
chr5:59782632-59782339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 114
               

               
Conread position:
               
72-374
               

               
Cow position:
               
chr5:32261352-32261055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
72-376
               

               
Cow position:
               
chr5:34300012-34300311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
72-376
               

               
Cow position:
               
chr5:44617275-44617580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-376
               

               
Cow position:
               
chr5:50899762-50900061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 135
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:5937436-5937743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:26096402-26096708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 87
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:27903530-27903834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
8, 74
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:28037223-28037517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 67
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:38379122-38379424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:49565700-49566001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 43
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:57613923-57613632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:59083079-59082777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:60185807-60186121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 55
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr5:66278563-66278860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:2395178-2394870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:3970654-3970960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 117
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:9676499-9676192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 183
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:12502043-12501731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 172
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:15677191-15677494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 21
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:18118845-18118537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:22857503-22857195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:27691118-27691422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 67
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:32755320-32755013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 43
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:39363002-39363310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:40828249-40827945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 104
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:41586404-41586712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:54169902-54170206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:54693975-54693678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
284, 45
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:57363666-57363357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
196, 68
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr5:64009589-64009282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 45
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:443179-442870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:710021-709711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 131
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:1059437-1059128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:1383111-1383412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 53
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:1395332-1395021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:2917592-2917894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 81
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:3551574-3551273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:3695477-3695770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:4015742-4015433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:4199492-4199199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
285, 76
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:4683370-4683062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:4754003-4753695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 297
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:4963256-4962948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 227
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:5106354-5106662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 60
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:5924847-5924544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 249
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6060501-6060193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 188
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6125032-6124724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 142
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6455533-6455224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6572118-6571816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6694664-6694973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:6772696-6773004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 102
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:9235282-9234975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
145, 167
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:10457398-10457697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
284, 35
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:11631855-11631546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:11956365-11956067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:12133723-12134032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:13807621-13807323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 25
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:15856095-15855798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 14
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:17027204-17027504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 26
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:20107897-20107593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 106
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:21185202-21184895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
137, 73
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:21188064-21188369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 257
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:23648297-23647996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
284, 94
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:24577566-24577876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:25930761-25930467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
287, 57
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:26052861-26053170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:27491106-27491410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 175
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:27907332-27907029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 38
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:28012987-28013296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:29558721-29559027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:31709430-31709730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 233
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:34683230-34682924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:36369862-36369553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:37380216-37380525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:41067144-41067450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 70
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:42043979-42044277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
150, 79
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:44275725-44276034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:45179716-45179408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 9
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:45941867-45941557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 43
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:46667204-46667510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 293
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:46779646-46779954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 76
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:46816972-46816664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:49221363-49221059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 33
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:51859194-51858894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
237, 62
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:52823077-52822770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:53075740-53075431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:54927789-54927485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 128
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:54930117-54929813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 128
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:54951992-54951678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:55087983-55088306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:55677004-55677300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
285, 29
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:57336234-57335925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:58900914-58900605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:59064574-59064882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 57
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:59146738-59147046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 250
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:59304155-59303863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
284, 105
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:59448584-59448276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
144, 114
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:63312389-63312080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:66337981-66338284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:70402010-70402296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:72007763-72007461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 237
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:72857004-72857314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:73485756-73485449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 236
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:75754987-75754685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 21
               

               
Conread position:
               
72-380
               

               
Cow position:
               
chr5:76098900-76098591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:3203968-3204270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 15
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:4348858-4348575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:5787200-5786890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 272
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:10853704-10853394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:16895016-16894690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
139, 20
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:16909776-16909476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:17426020-17425709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:18404926-18404630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 73
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:21827950-21828271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:24087920-24087610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:24299143-24299453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:25912847-25913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:27549379-27549074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:28223570-28223882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 32
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:29968738-29969048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:31634567-31634866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:32964930-32964620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 198
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:34192053-34192360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:34559276-34559577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 68
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:34669959-34669655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 170
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:35207372-35207676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 180
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:39448416-39448113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 87
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:39816170-39815871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 26
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:42743921-42744225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:43991412-43991712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:46671735-46672047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:49126835-49127147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:50201866-50201560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
213, 55
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:50599189-50599498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:50728440-50728743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 33
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:52041354-52041049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 62
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:52829656-52829347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 157
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:54337032-54337339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 233
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:54622745-54623055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
192, 102
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:57935992-57935680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 173
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:58770742-58770432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr5:70103551-70103226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:25920651-25920353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 33
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:51166179-51165867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 66
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:54721787-54722091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 21
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:57125135-57125446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 195
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:62159795-62159480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 104
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr5:72046533-72046230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 72
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr5:24221125-24221431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr5:52437224-52437528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
283, 37
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr5:53834782-53835112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 174
               

               
Conread position:
               
72-386
               

               
Cow position:
               
chr5:15761240-15760928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 283
               

               
Conread position:
               
72-386
               

               
Cow position:
               
chr5:52229222-52228922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
273, 172
               

               
Conread position:
               
72-387
               

               
Cow position:
               
chr5:16085681-16085360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 305
               

               
Conread position:
               
72-387
               

               
Cow position:
               
chr5:39936230-39936548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-388
               

               
Cow position:
               
chr5:10096710-10096396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
179, 157
               

               
Conread position:
               
72-388
               

               
Cow position:
               
chr5:48225446-48225138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
284, 76
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr5:295395-295709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 128
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr5:50063675-50063985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 43
               

               
Conread position:
               
72-394
               

               
Cow position:
               
chr5:15723186-15722870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 219
               

               
Conread position:
               
72-394
               

               
Cow position:
               
chr5:37625989-37626300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 94
               

               
Conread position:
               
72-395
               

               
Cow position:
               
chr5:14543171-14542843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 310
               

               
Conread position:
               
72-398
               

               
Cow position:
               
chr5:4434374-4434048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
73-312
               

               
Cow position:
               
chr5:4629892-4630132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
73-318
               

               
Cow position:
               
chr5:34524106-34523871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
73-373
               

               
Cow position:
               
chr5:33793011-33793304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
283, 56
               

               
Conread position:
               
73-377
               

               
Cow position:
               
chr5:59771179-59771483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
197, 130
               

               
Conread position:
               
73-378
               

               
Cow position:
               
chr5:61231320-61231009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
73-380
               

               
Cow position:
               
chr5:29634560-29634868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 0
               

               
Conread position:
               
73-381
               

               
Cow position:
               
chr5:45705142-45705449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 298
               

               
Conread position:
               
74-332
               

               
Cow position:
               
chr5:1131343-1131077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
74-377
               

               
Cow position:
               
chr5:45284487-45284182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
197, 74
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr5:49490111-49490404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
74-383
               

               
Cow position:
               
chr5:69519732-69520049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 201
               

               
Conread position:
               
75-229
               

               
Cow position:
               
chr5:33536749-33536898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
75-378
               

               
Cow position:
               
chr5:7552900-7553195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
75-379
               

               
Cow position:
               
chr5:52605492-52605167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
75-380
               

               
Cow position:
               
chr5:53753440-53753150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
282, 42
               

               
Conread position:
               
75-380
               

               
Cow position:
               
chr5:54785975-54785670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 202
               

               
Conread position:
               
75-381
               

               
Cow position:
               
chr5:14904947-14904649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
75-381
               

               
Cow position:
               
chr5:48409315-48409018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 34
               

               
Conread position:
               
75-382
               

               
Cow position:
               
chr5:4165765-4166065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 64
               

               
Conread position:
               
75-383
               

               
Cow position:
               
chr5:68593556-68593862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 90
               

               
Conread position:
               
76-222
               

               
Cow position:
               
chr5:6044132-6044278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-240
               

               
Cow position:
               
chr5:6180676-6180837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 34
               

               
Conread position:
               
76-269
               

               
Cow position:
               
chr5:48574693-48574502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
76-294
               

               
Cow position:
               
chr5:11437504-11437287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
76-316
               

               
Cow position:
               
chr5:18465676-18465908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
198, 72
               

               
Conread position:
               
76-350
               

               
Cow position:
               
chr5:53149135-53148864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
76-357
               

               
Cow position:
               
chr5:18883473-18883201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
76-359
               

               
Cow position:
               
chr5:46685487-46685219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:10772696-10772393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:19420283-19419989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:19969908-19969613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 161
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:33775650-33775348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:41411302-41411001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
145, 63
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr5:61224162-61224461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
76-379
               

               
Cow position:
               
chr5:4040986-4040682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
99, 177
               

               
Conread position:
               
76-379
               

               
Cow position:
               
chr5:32088644-32088342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:445613-445918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:2959395-2959702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 94
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:7140962-7140660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 81
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:8996873-8996576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 80
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:10840330-10840037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 126
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:18901456-18901752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 10
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:24101784-24102089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 166
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:51502019-51502313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 51
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:51746352-51746657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:54038310-54038618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:64061461-64061766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chr5:66256766-66257062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:6576457-6576149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 101
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:10262142-10261828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 240
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:12872580-12872893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 289
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:13258727-13259014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:14630796-14630496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 133
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:21524187-21524488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 115
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:32697657-32697368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:41951930-41951629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 95
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:58004363-58004661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 176
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr5:58245466-58245771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
76-383
               

               
Cow position:
               
chr5:23829058-23828755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 91
               

               
Conread position:
               
76-391
               

               
Cow position:
               
chr5:18126752-18127059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
77-350
               

               
Cow position:
               
chr5:28529186-28528917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
77-374
               

               
Cow position:
               
chr5:49671372-49671662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
77-379
               

               
Cow position:
               
chr5:16125381-16125081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
175, 45
               

               
Conread position:
               
77-379
               

               
Cow position:
               
chr5:57969887-57970180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
279, 104
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:26100865-26101171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 194
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:32365803-32366098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr5:46333922-46334223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
176, 67
               

               
Conread position:
               
77-381
               

               
Cow position:
               
chr5:15362179-15362477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 126
               

               
Conread position:
               
77-381
               

               
Cow position:
               
chr5:46626142-46625836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 261
               

               
Conread position:
               
78-359
               

               
Cow position:
               
chr5:54125200-54125483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 181
               

               
Conread position:
               
78-379
               

               
Cow position:
               
chr5:16960300-16960012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
278, 15
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr5:68337379-68337083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 9
               

               
Conread position:
               
78-381
               

               
Cow position:
               
chr5:10542540-10542238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 251
               

               
Conread position:
               
79-381
               

               
Cow position:
               
chr5:58145503-58145212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 14
               

               
Conread position:
               
80-379
               

               
Cow position:
               
chr5:25023443-25023722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
276, 60
               

               
Conread position:
               
80-379
               

               
Cow position:
               
chr5:54454634-54454925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
276, 68
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chr5:411581-411279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 0
               

               
Conread position:
               
81-312
               

               
Cow position:
               
chr5:14313409-14313630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
81-381
               

               
Cow position:
               
chr5:18250191-18250487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 94
               

               
Conread position:
               
82-381
               

               
Cow position:
               
chr5:36724584-36724300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 22
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr5:58461551-58461283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr5:48971873-48972037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 30
               

               
Conread position:
               
87-318
               

               
Cow position:
               
chr5:48832532-48832754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
87-379
               

               
Cow position:
               
chr5:34678023-34678311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
87-380
               

               
Cow position:
               
chr5:41333735-41334022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
270, 61
               

               
Conread position:
               
87-380
               

               
Cow position:
               
chr5:68273704-68273410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
88-380
               

               
Cow position:
               
chr5:39216401-39216694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 0
               

               
Conread position:
               
89-379
               

               
Cow position:
               
chr5:7808745-7808445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
176, 20
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chr5:25496262-25495975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 163
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chr5:51309099-51309383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 141
               

               
Conread position:
               
89-383
               

               
Cow position:
               
chr5:47600915-47601205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 125
               

               
Conread position:
               
91-376
               

               
Cow position:
               
chr5:72299122-72298848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 135
               

               
Conread position:
               
91-378
               

               
Cow position:
               
chr5:51074979-51074693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
235, 18
               

               
Conread position:
               
91-380
               

               
Cow position:
               
chr5:21661089-21660801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 60
               

               
Conread position:
               
92-362
               

               
Cow position:
               
chr5:42233138-42232873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
92-380
               

               
Cow position:
               
chr5:6741491-6741197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
93-383
               

               
Cow position:
               
chr5:19780885-19780592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
94-381
               

               
Cow position:
               
chr5:31217244-31217528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 159
               

               
Conread position:
               
96-378
               

               
Cow position:
               
chr5:59862367-59862092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
96-380
               

               
Cow position:
               
chr5:2238507-2238229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 115
               

               
Conread position:
               
96-381
               

               
Cow position:
               
chr5:7192582-7192860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr5:22854939-22854717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
97-374
               

               
Cow position:
               
chr5:50990467-50990741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
256, 157
               

               
Conread position:
               
97-379
               

               
Cow position:
               
chr5:34532771-34533056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
158, 51
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr5:26335980-26335709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
159, 37
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr5:34145752-34145483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr5:71063710-71063992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
153, 103
               

               
Conread position:
               
98-326
               

               
Cow position:
               
chr5:36406312-36406542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr5:38662881-38663158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 223
               

               
Conread position:
               
98-379
               

               
Cow position:
               
chr5:52646184-52645905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 146
               

               
Conread position:
               
98-392
               

               
Cow position:
               
chr5:54868372-54868668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 0
               

               
Conread position:
               
100-248
               

               
Cow position:
               
chr5:32081390-32081242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
101-380
               

               
Cow position:
               
chr5:54360962-54360682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 0
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chr5:43349955-43350233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 0
               

               
Conread position:
               
105-378
               

               
Cow position:
               
chr5:60274970-60275236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
107-388
               

               
Cow position:
               
chr5:74041587-74041307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
109-351
               

               
Cow position:
               
chr5:34886500-34886268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chr5:18275626-18275870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr5:1105711-1105439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr5:32141374-32141098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
111, 139
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr5:54397360-54397086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
115, 185
               

               
Conread position:
               
109-380
               

               
Cow position:
               
chr5:10479479-10479205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 254
               

               
Conread position:
               
109-380
               

               
Cow position:
               
chr5:14833471-14833197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
138, 6
               

               
Conread position:
               
109-380
               

               
Cow position:
               
chr5:27058472-27058200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 0
               

               
Conread position:
               
109-381
               

               
Cow position:
               
chr5:40346935-40346668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
109-381
               

               
Cow position:
               
chr5:41980557-41980825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 145
               

               
Conread position:
               
110-381
               

               
Cow position:
               
chr5:47704987-47704719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
111-379
               

               
Cow position:
               
chr5:26466794-26467035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
113-389
               

               
Cow position:
               
chr5:31120018-31119745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 138
               

               
Conread position:
               
114-328
               

               
Cow position:
               
chr5:742288-742077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
114-381
               

               
Cow position:
               
chr5:40891312-40891052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 131
               

               
Conread position:
               
115-303
               

               
Cow position:
               
chr5:13867434-13867249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
115-381
               

               
Cow position:
               
chr5:25927253-25926997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 73
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr5:65593070-65593331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 65
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chr5:31285031-31285296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chr5:35497682-35497947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chr5:41954132-41953869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
204, 129
               

               
Conread position:
               
116-380
               

               
Cow position:
               
chr5:49102998-49103263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 0
               

               
Conread position:
               
118-381
               

               
Cow position:
               
chr5:6032150-6032425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
120-381
               

               
Cow position:
               
chr5:34637617-34637883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
122-387
               

               
Cow position:
               
chr5:25638850-25638595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
86, 103
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr5:10414778-10415011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
123-355
               

               
Cow position:
               
chr5:48065420-48065193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
123-379
               

               
Cow position:
               
chr5:32614867-32614610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
209, 121
               

               
Conread position:
               
123-380
               

               
Cow position:
               
chr5:37609828-37609570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
123-380
               

               
Cow position:
               
chr5:56931705-56931452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 47
               

               
Conread position:
               
123-381
               

               
Cow position:
               
chr5:19471082-19470816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
123-381
               

               
Cow position:
               
chr5:23641839-23641581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
128, 36
               

               
Conread position:
               
124-346
               

               
Cow position:
               
chr5:27679911-27679689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 10
               

               
Conread position:
               
124-378
               

               
Cow position:
               
chr5:49429152-49428882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
124-378
               

               
Cow position:
               
chr5:72345660-72345405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
124-379
               

               
Cow position:
               
chr5:27344116-27343856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 246
               

               
Conread position:
               
124-381
               

               
Cow position:
               
chr5:7277052-7277325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
124-381
               

               
Cow position:
               
chr5:27656041-27656294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 128
               

               
Conread position:
               
125-380
               

               
Cow position:
               
chr5:4041320-4041576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 0
               

               
Conread position:
               
125-380
               

               
Cow position:
               
chr5:10514303-10514558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 108
               

               
Conread position:
               
125-380
               

               
Cow position:
               
chr5:11780698-11780445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 53
               

               
Conread position:
               
126-381
               

               
Cow position:
               
chr5:31145611-31145358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
127-354
               

               
Cow position:
               
chr5:33866213-33865994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
129-373
               

               
Cow position:
               
chr5:23351253-23351498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
144, 92
               

               
Conread position:
               
129-379
               

               
Cow position:
               
chr5:27346402-27346657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 241
               

               
Conread position:
               
131-380
               

               
Cow position:
               
chr5:21592351-21592598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
133-250
               

               
Cow position:
               
chr5:49690785-49690902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-380
               

               
Cow position:
               
chr5:1216535-1216782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 62
               

               
Conread position:
               
135-342
               

               
Cow position:
               
chr5:57934045-57933838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-380
               

               
Cow position:
               
chr5:57986688-57986931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
136-369
               

               
Cow position:
               
chr5:50991858-50992093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               
UCSC Genome Browser

               
Conread position:
               
136-381
               

               
Cow position:
               
chr5:40648720-40648961 (view  custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
220, 96
               
UCSC Genome Browser

               
               
               
Conread position:
140-365

               
               
               
Cow position:
chr5:46339159-46339398 (view  custom track)

               
               
               
Alignm length:
241

               
               
               
Alignm identity:
181

               
               
               
Alignm E-value:
3e-38

               
               
               
Alignm gaps (pig, cow):
101, 8
UCSC Genome Browser

               
               
               
Conread position:
140-374

               
               
               
Cow position:
chr5:28928588-28928354 (view  custom track)

               
               
               
Alignm length:
236

               
               
               
Alignm identity:
176

               
               
               
Alignm E-value:
6.02558e-44

               
               
               
Alignm gaps (pig, cow):
216, 59

               
               
               Conread position:140-378
               
               
               Cow position:chr5:12234893-12235130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 5

               
               
               Conread position:140-378
               
               
               Cow position:chr5:33472329-33472091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):216, 12

               
               
               Conread position:140-379
               
               
               Cow position:chr5:6129629-6129863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):216, 8

               
               
               Conread position:140-379
               
               
               Cow position:chr5:20430522-20430755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:140-379
               
               
               Cow position:chr5:73967185-73966946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:140-380
               
               
               Cow position:chr5:27100420-27100664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:140-381
               
               
               Cow position:chr5:14877241-14876989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:141-353
               
               
               Cow position:chr5:1767131-1766904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:141-378
               
               
               Cow position:chr5:28700732-28700500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):215, 92

               
               
               Conread position:141-380
               
               
               Cow position:chr5:62171557-62171798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 97

               
               
               Conread position:144-380
               
               
               Cow position:chr5:29122825-29122593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 9

               
               
               Conread position:145-314
               
               
               Cow position:chr5:28331426-28331256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:145-379
               
               
               Cow position:chr5:51069406-51069642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:146-380
               
               
               Cow position:chr5:40864625-40864390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:148-378
               
               
               Cow position:chr5:27173919-27174139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):208, 20

               
               
               Conread position:148-378
               
               
               Cow position:chr5:62817602-62817372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):154, 104

               
               
               Conread position:148-379
               
               
               Cow position:chr5:50167108-50167332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):208, 63

               
               
               Conread position:148-380
               
               
               Cow position:chr5:8421374-8421142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 64

               
               
               Conread position:148-380
               
               
               Cow position:chr5:11986974-11986745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 136

               
               
               Conread position:148-380
               
               
               Cow position:chr5:12325383-12325150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:148-380
               
               
               Cow position:chr5:29661205-29660967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:148-380
               
               
               Cow position:chr5:35488021-35487791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):211, 104

               
               
               Conread position:148-380
               
               
               Cow position:chr5:36873435-36873214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):209, 83

               
               
               Conread position:148-380
               
               
               Cow position:chr5:40712267-40712041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):209, 89

               
               
               Conread position:148-380
               
               
               Cow position:chr5:46295479-46295245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:148-380
               
               
               Cow position:chr5:69753420-69753187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):149, 106

               
               
               Conread position:148-381
               
               
               Cow position:chr5:397154-396919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 86

               
               
               Conread position:148-381
               
               
               Cow position:chr5:12641046-12640815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:148-381
               
               
               Cow position:chr5:66113229-66113002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:148-387
               
               
               Cow position:chr5:48131590-48131828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):206, 135

               
               
               Conread position:149-378
               
               
               Cow position:chr5:39468096-39468324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):205, 118

               
               
               Conread position:149-381
               
               
               Cow position:chr5:53866239-53866472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 163

               
               
               Conread position:150-378
               
               
               Cow position:chr5:7585313-7585084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:150-379
               
               
               Cow position:chr5:54714558-54714328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 149

               
               
               Conread position:150-387
               
               
               Cow position:chr5:76050176-76049942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):204, 107

               
               
               Conread position:152-380
               
               
               Cow position:chr5:47565107-47564878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:152-380
               
               
               Cow position:chr5:47565575-47565346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:152-395
               
               
               Cow position:chr5:41918250-41918015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):205, 24

               
               
               Conread position:153-380
               
               
               Cow position:chr5:48405811-48405573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):93, 174

               
               
               Conread position:153-383
               
               
               Cow position:chr5:14140853-14141082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 41

               
               
               Conread position:156-380
               
               
               Cow position:chr5:407655-407880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:157-279
               
               
               Cow position:chr5:9075764-9075642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:157-379
               
               
               Cow position:chr5:70249347-70249568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 143

               
               
               Conread position:158-352
               
               
               Cow position:chr5:4437602-4437793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:158-367
               
               
               Cow position:chr5:34584969-34584759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:159-380
               
               
               Cow position:chr5:13989711-13989489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:159-380
               
               
               Cow position:chr5:44359114-44359320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:160-378
               
               
               Cow position:chr5:70603799-70604012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):197, 17

               
               
               Conread position:160-380
               
               
               Cow position:chr5:13702334-13702545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):156, 40

               
               
               Conread position:161-355
               
               
               Cow position:chr5:25253621-25253811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:161-379
               
               
               Cow position:chr5:25901042-25900832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):195, 23

               
               
               Conread position:161-380
               
               
               Cow position:chr5:47590375-47590156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 106

               
               
               Conread position:161-383
               
               
               Cow position:chr5:73254000-73253781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):197, 178

               
               
               Conread position:163-378
               
               
               Cow position:chr5:26402601-26402387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):194, 89

               
               
               Conread position:163-379
               
               
               Cow position:chr5:15123075-15122865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:163-380
               
               
               Cow position:chr5:63631091-63631309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:164-380
               
               
               Cow position:chr5:21548069-21547853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):192, 31

               
               
               Conread position:166-378
               
               
               Cow position:chr5:66982294-66982502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:166-381
               
               
               Cow position:chr5:65600452-65600665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):191, 41

               
               
               Conread position:167-380
               
               
               Cow position:chr5:23565488-23565702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:169-306
               
               
               Cow position:chr5:56372404-56372267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:170-381
               
               
               Cow position:chr5:693785-693992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:171-376
               
               
               Cow position:chr5:73735550-73735755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:171-379
               
               
               Cow position:chr5:33189441-33189643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:171-379
               
               
               Cow position:chr5:35762519-35762720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):147, 81

               
               
               Conread position:172-355
               
               
               Cow position:chr5:33064719-33064542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:172-380
               
               
               Cow position:chr5:36410210-36410001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:177-315
               
               
               Cow position:chr5:69098616-69098762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:177-380
               
               
               Cow position:chr5:43395526-43395731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:177-380
               
               
               Cow position:chr5:45606249-45606455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:180-312
               
               
               Cow position:chr5:43964269-43964137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-378
               
               
               Cow position:chr5:70593764-70593565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:180-380
               
               
               Cow position:chr5:825446-825647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:181-379
               
               
               Cow position:chr5:25231792-25231595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 105

               
               
               Conread position:182-352
               
               
               Cow position:chr5:46750145-46749975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-341
               
               
               Cow position:chr5:30275925-30276084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):77, 69

               
               
               Conread position:183-380
               
               
               Cow position:chr5:29633743-29633545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:183-381
               
               
               Cow position:chr5:59518775-59518576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:188-380
               
               
               Cow position:chr5:5814854-5814661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:189-358
               
               
               Cow position:chr5:9074648-9074482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):167, 68

               
               
               Conread position:189-380
               
               
               Cow position:chr5:38883441-38883250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):166, 98

               
               
               Conread position:189-383
               
               
               Cow position:chr5:7581860-7581664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:190-381
               
               
               Cow position:chr5:53854950-53855139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:191-380
               
               
               Cow position:chr5:351609-351419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:191-380
               
               
               Cow position:chr5:37758591-37758402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):165, 61

               
               
               Conread position:191-385
               
               
               Cow position:chr5:42668174-42667972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 112

               
               
               Conread position:192-387
               
               
               Cow position:chr5:50443376-50443181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:194-348
               
               
               Cow position:chr5:46652982-46653132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:194-380
               
               
               Cow position:chr5:10261172-10260986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-379
               
               
               Cow position:chr5:60519433-60519248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:196-379
               
               
               Cow position:chr5:14781685-14781506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 31

               
               
               Conread position:197-378
               
               
               Cow position:chr5:21018926-21018745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):158, 8

               
               
               Conread position:197-380
               
               
               Cow position:chr5:5393363-5393541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:197-380
               
               
               Cow position:chr5:27614734-27614918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):155, 55

               
               
               Conread position:198-382
               
               
               Cow position:chr5:32339717-32339526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:199-379
               
               
               Cow position:chr5:44379697-44379879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:200-381
               
               
               Cow position:chr5:20408803-20408620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:150
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:200-381
               
               
               Cow position:chr5:29827288-29827466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:202-380
               
               
               Cow position:chr5:27046165-27046347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:202-386
               
               
               Cow position:chr5:52289016-52289201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:203-379
               
               
               Cow position:chr5:44753065-44752885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:203-380
               
               
               Cow position:chr5:38831478-38831657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:203-381
               
               
               Cow position:chr5:53005998-53005819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:204-380
               
               
               Cow position:chr5:11835200-11835023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:204-380
               
               
               Cow position:chr5:23882068-23881892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):152, 125

               
               
               Conread position:205-380
               
               
               Cow position:chr5:52240004-52239828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:209-355
               
               
               Cow position:chr5:60674429-60674576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:210-359
               
               
               Cow position:chr5:9091036-9090887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:211-381
               
               
               Cow position:chr5:37942539-37942370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:212-380
               
               
               Cow position:chr5:39750103-39750262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):145, 22

               
               
               Conread position:212-381
               
               
               Cow position:chr5:64724611-64724446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:214-367
               
               
               Cow position:chr5:35455581-35455735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:131
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:214-379
               
               
               Cow position:chr5:6287075-6286914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:214-380
               
               
               Cow position:chr5:1640603-1640436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:144
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:214-380
               
               
               Cow position:chr5:20070663-20070502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:214-380
               
               
               Cow position:chr5:24633346-24633513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:140
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:214-380
               
               
               Cow position:chr5:57950028-57949861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:214-381
               
               
               Cow position:chr5:31097548-31097382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:214-381
               
               
               Cow position:chr5:47871796-47871633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):142, 28

               
               
               Conread position:215-380
               
               
               Cow position:chr5:31785554-31785721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:215-380
               
               
               Cow position:chr5:38570899-38571061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):141, 72

               
               
               Conread position:216-380
               
               
               Cow position:chr5:38075583-38075418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:141
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:217-378
               
               
               Cow position:chr5:10418071-10417911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):139, 88

               
               
               Conread position:217-379
               
               
               Cow position:chr5:23683835-23683674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:217-380
               
               
               Cow position:chr5:5686002-5685839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:138
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:217-380
               
               
               Cow position:chr5:66119975-66119809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:218-380
               
               
               Cow position:chr5:48373939-48374102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:221-380
               
               
               Cow position:chr5:46587786-46587626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:221-380
               
               
               Cow position:chr5:66351847-66352003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:221-381
               
               
               Cow position:chr5:48828402-48828561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):135, 95

               
               
               Conread position:222-379
               
               
               Cow position:chr5:58322452-58322295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:224-381
               
               
               Cow position:chr5:5812827-5812669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:224-381
               
               
               Cow position:chr5:63648210-63648051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:227-380
               
               
               Cow position:chr5:50981650-50981804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:227-381
               
               
               Cow position:chr5:69337059-69337210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:228-380
               
               
               Cow position:chr5:58320669-58320816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:230-381
               
               
               Cow position:chr5:42671745-42671592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:230-381
               
               
               Cow position:chr5:64748140-64747990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 134

               
               
               Conread position:231-380
               
               
               Cow position:chr5:26460918-26461068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:231-380
               
               
               Cow position:chr5:40396349-40396499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:233-378
               
               
               Cow position:chr5:13206110-13205967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:234-378
               
               
               Cow position:chr5:48574504-48574362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:234-381
               
               
               Cow position:chr5:57625668-57625813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:235-380
               
               
               Cow position:chr5:3229467-3229324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:236-381
               
               
               Cow position:chr5:60447309-60447450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:239-380
               
               
               Cow position:chr5:19561206-19561065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:244-380
               
               
               Cow position:chr5:37288486-37288623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:245-376
               
               
               Cow position:chr5:75757476-75757607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:245-380
               
               
               Cow position:chr5:20269772-20269907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:245-380
               
               
               Cow position:chr5:61235250-61235387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:245-381
               
               
               Cow position:chr5:35180535-35180672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:246-381
               
               
               Cow position:chr5:13718856-13718720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:247-380
               
               
               Cow position:chr5:60376936-60376801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:247-380
               
               
               Cow position:chr5:73438850-73438984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 63

               
               
               Conread position:247-381
               
               
               Cow position:chr5:70960866-70960731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:248-380
               
               
               Cow position:chr5:47750234-47750366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:248-381
               
               
               Cow position:chr5:15598954-15598822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:248-381
               
               
               Cow position:chr5:28854620-28854487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:249-379
               
               
               Cow position:chr5:18844334-18844465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:251-378
               
               
               Cow position:chr5:32230912-32231041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:254-379
               
               
               Cow position:chr5:4542301-4542426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:258-379
               
               
               Cow position:chr5:46235517-46235395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:258-379
               
               
               Cow position:chr5:50622929-50622808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:258-380
               
               
               Cow position:chr5:11638834-11638953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:258-380
               
               
               Cow position:chr5:37047220-37047343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:258-380
               
               
               Cow position:chr5:59991040-59991162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 112

               
               
               Conread position:258-381
               
               
               Cow position:chr5:4071163-4071287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:259-379
               
               
               Cow position:chr5:58332827-58332945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:259-381
               
               
               Cow position:chr5:58797451-58797327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:260-379
               
               
               Cow position:chr5:29432271-29432154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:260-380
               
               
               Cow position:chr5:24643509-24643386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:261-393
               
               
               Cow position:chr5:42344630-42344497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:262-378
               
               
               Cow position:chr5:35967503-35967618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:262-381
               
               
               Cow position:chr5:28331025-28330905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:267-376
               
               
               Cow position:chr5:72901853-72901962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:267-378
               
               
               Cow position:chr5:19284177-19284065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:267-380
               
               
               Cow position:chr5:37782810-37782696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:267-380
               
               
               Cow position:chr5:69771476-69771590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:267-381
               
               
               Cow position:chr5:32316004-32315888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:267-383
               
               
               Cow position:chr5:48542996-48542880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:269-377
               
               
               Cow position:chr5:15391536-15391645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:269-380
               
               
               Cow position:chr5:72041508-72041620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:269-381
               
               
               Cow position:chr5:18903123-18903237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:271-381
               
               
               Cow position:chr5:26134151-26134040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:271-381
               
               
               Cow position:chr5:56467011-56467121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:272-383
               
               
               Cow position:chr5:33063263-33063375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:273-381
               
               
               Cow position:chr5:15478175-15478281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:274-380
               
               
               Cow position:chr5:9412590-9412483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:275-381
               
               
               Cow position:chr5:22311070-22311173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:276-380
               
               
               Cow position:chr5:33537040-33537145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:277-381
               
               
               Cow position:chr5:55757126-55757023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:278-380
               
               
               Cow position:chr5:29223366-29223469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:279-381
               
               
               Cow position:chr5:30816025-30816128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:281-380
               
               
               Cow position:chr5:59450677-59450775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:284-380
               
               
               Cow position:chr5:7066881-7066784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:286-383
               
               
               Cow position:chr5:30486590-30486688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:288-380
               
               
               Cow position:chr5:44532610-44532703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:288-381
               
               
               Cow position:chr5:21943697-21943791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:291-380
               
               
               Cow position:chr5:35543008-35543098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:293-380
               
               
               Cow position:chr5:40864237-40864149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:294-380
               
               
               Cow position:chr5:46845721-46845634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:298-380
               
               
               Cow position:chr5:19915136-19915219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:76
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 0
Show alignments to all cow chromosomes.