Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 468-748 |
| Cow position: | chr1:86592470-86592179 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 472-743 |
| Cow position: | chr1:43868191-43867917 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 480-659 |
| Cow position: | chr1:46384912-46385090 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 480-708 |
| Cow position: | chr1:62338193-62337967 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 480-748 |
| Cow position: | chr1:42788965-42789221 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 480-748 |
| Cow position: | chr1:43605668-43605932 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 480-757 |
| Cow position: | chr1:80845951-80846220 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 480-759 |
| Cow position: | chr1:76572543-76572818 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 482-754 |
| Cow position: | chr1:9294178-9293906 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 483-748 |
| Cow position: | chr1:7193486-7193744 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 483-754 |
| Cow position: | chr1:38982869-38982599 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 484-748 |
| Cow position: | chr1:7941666-7941927 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 487-619 |
| Cow position: | chr1:59273700-59273570 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 487-747 |
| Cow position: | chr1:20730455-20730711 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 487-747 |
| Cow position: | chr1:24693188-24693444 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 488-728 |
| Cow position: | chr1:65810304-65810061 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 488-734 |
| Cow position: | chr1:32281239-32281491 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 488-748 |
| Cow position: | chr1:29445821-29445580 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 488-753 |
| Cow position: | chr1:98714271-98714534 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 491-745 |
| Cow position: | chr1:22522278-22522536 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 491-748 |
| Cow position: | chr1:84057230-84056989 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 492-746 |
| Cow position: | chr1:10755910-10756164 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 492-746 |
| Cow position: | chr1:19592562-19592812 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 105, 8 |
| Conread position: | 498-737 |
| Cow position: | chr1:90198545-90198777 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 98, 36 |
| Conread position: | 498-748 |
| Cow position: | chr1:13639044-13639286 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 498-748 |
| Cow position: | chr1:24129540-24129809 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 499-745 |
| Cow position: | chr1:99761627-99761880 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 143 |
| Conread position: | 499-746 |
| Cow position: | chr1:59191323-59191569 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 499-748 |
| Cow position: | chr1:33872544-33872297 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 499-751 |
| Cow position: | chr1:58870587-58870332 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 503-748 |
| Cow position: | chr1:81902342-81902092 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 508-746 |
| Cow position: | chr1:92971947-92971712 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 515-746 |
| Cow position: | chr1:594197-594426 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 515-751 |
| Cow position: | chr1:22409449-22409212 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 516-749 |
| Cow position: | chr1:17156804-17156563 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 518-745 |
| Cow position: | chr1:39230547-39230775 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 519-749 |
| Cow position: | chr1:52596100-52596328 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 162 |
| Conread position: | 523-704 |
| Cow position: | chr1:45154930-45154749 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 523-751 |
| Cow position: | chr1:61804517-61804293 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 71, 41 |
| Conread position: | 530-748 |
| Cow position: | chr1:4638437-4638220 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 530-748 |
| Cow position: | chr1:23895408-23895627 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 538-738 |
| Cow position: | chr1:13630442-13630646 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 547-745 |
| Cow position: | chr1:82179451-82179650 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 548-746 |
| Cow position: | chr1:7050663-7050462 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 552-748 |
| Cow position: | chr1:85593532-85593335 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 552-751 |
| Cow position: | chr1:26181890-26182091 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 552-779 |
| Cow position: | chr1:18261672-18261902 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 559-748 |
| Cow position: | chr1:29615902-29616084 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 568-748 |
| Cow position: | chr1:6245084-6244903 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 571-748 |
| Cow position: | chr1:22765282-22765103 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 574-746 |
| Cow position: | chr1:71224375-71224546 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 593-746 |
| Cow position: | chr1:9047995-9047842 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 593-752 |
| Cow position: | chr1:32093272-32093120 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.