Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 438-731 |
| Cow position: | chr11:16795097-16794821 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 158, 47 |
| Conread position: | 480-744 |
| Cow position: | chr11:6321515-6321768 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 116, 21 |
| Conread position: | 480-746 |
| Cow position: | chr11:65114332-65114603 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 480-747 |
| Cow position: | chr11:60074400-60074664 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 481-765 |
| Cow position: | chr11:44549759-44550026 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 114, 23 |
| Conread position: | 482-748 |
| Cow position: | chr11:9419491-9419230 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 484-684 |
| Cow position: | chr11:26777668-26777863 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 486-748 |
| Cow position: | chr11:4955099-4955358 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 486-753 |
| Cow position: | chr11:4321383-4321116 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 487-748 |
| Cow position: | chr11:28851284-28851032 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 487-751 |
| Cow position: | chr11:62446435-62446175 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 488-770 |
| Cow position: | chr11:68303619-68303900 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 491-746 |
| Cow position: | chr11:60264628-60264883 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 498-667 |
| Cow position: | chr11:44001926-44002095 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 499-748 |
| Cow position: | chr11:39044870-39044613 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 503-748 |
| Cow position: | chr11:55638389-55638644 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 505-664 |
| Cow position: | chr11:36533354-36533513 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 509-704 |
| Cow position: | chr11:41578450-41578646 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 515-728 |
| Cow position: | chr11:28088283-28088068 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 516-665 |
| Cow position: | chr11:61618497-61618349 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 518-750 |
| Cow position: | chr11:65750269-65750498 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 523-728 |
| Cow position: | chr11:73843145-73842937 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 529-746 |
| Cow position: | chr11:21409321-21409105 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 538-748 |
| Cow position: | chr11:39620464-39620253 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 546-743 |
| Cow position: | chr11:16819823-16820023 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 546-748 |
| Cow position: | chr11:75994991-75994785 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 549-748 |
| Cow position: | chr11:84947460-84947657 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 554-703 |
| Cow position: | chr11:76690409-76690263 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 564-746 |
| Cow position: | chr11:59983131-59982946 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 142 |
| Conread position: | 584-757 |
| Cow position: | chr11:31611228-31611058 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 591-748 |
| Cow position: | chr11:29073870-29074027 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 81 |
Show alignments to all cow chromosomes.