Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 9-515 |
| Cow position: | chr13:56368679-56368164 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 398 |
| Conread position: | 480-748 |
| Cow position: | chr13:2901272-2901542 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 482-748 |
| Cow position: | chr13:28535774-28535499 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 482-751 |
| Cow position: | chr13:37048994-37048725 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 484-662 |
| Cow position: | chr13:40086508-40086688 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 484-748 |
| Cow position: | chr13:19462064-19462328 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 484-748 |
| Cow position: | chr13:61959950-61959698 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 487-748 |
| Cow position: | chr13:37356426-37356686 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 491-738 |
| Cow position: | chr13:1829407-1829643 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 491-763 |
| Cow position: | chr13:12669462-12669200 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 492-662 |
| Cow position: | chr13:17423339-17423510 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 492-750 |
| Cow position: | chr13:25612201-25611939 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 493-764 |
| Cow position: | chr13:60504184-60504462 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 497-678 |
| Cow position: | chr13:36401447-36401268 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 499-738 |
| Cow position: | chr13:23245798-23246036 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 500-748 |
| Cow position: | chr13:760293-760540 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 504-746 |
| Cow position: | chr13:1455133-1455366 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 514-751 |
| Cow position: | chr13:15755420-15755656 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 515-744 |
| Cow position: | chr13:1029760-1029528 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 32, 121 |
| Conread position: | 515-746 |
| Cow position: | chr13:8124810-8124585 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 539-882 |
| Cow position: | chr13:56368165-56367824 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 227 |
| Conread position: | 546-748 |
| Cow position: | chr13:13273117-13272916 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 164, 78 |
| Conread position: | 550-729 |
| Cow position: | chr13:31124496-31124322 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 48 |
| Conread position: | 550-748 |
| Cow position: | chr13:11672052-11671852 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 554-748 |
| Cow position: | chr13:50663456-50663263 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 569-709 |
| Cow position: | chr13:11544972-11545114 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 594-748 |
| Cow position: | chr13:18443884-18443730 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 68, 29 |
Show alignments to all cow chromosomes.