Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 470-651 |
| Cow position: | chr3:70068076-70068254 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 480-731 |
| Cow position: | chr3:41575691-41575443 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 483-738 |
| Cow position: | chr3:47189198-47188946 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 483-748 |
| Cow position: | chr3:34320171-34319917 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 483-748 |
| Cow position: | chr3:49832741-49832998 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 485-709 |
| Cow position: | chr3:74266776-74266553 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 174, 15 |
| Conread position: | 485-771 |
| Cow position: | chr3:82383274-82382992 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 487-748 |
| Cow position: | chr3:54379407-54379665 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 489-746 |
| Cow position: | chr3:38353917-38354172 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 490-748 |
| Cow position: | chr3:7651792-7651531 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 499-736 |
| Cow position: | chr3:80873125-80872897 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 499-746 |
| Cow position: | chr3:50010151-50009914 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 499-748 |
| Cow position: | chr3:41309028-41309279 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 499-765 |
| Cow position: | chr3:51881867-51882136 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 500-730 |
| Cow position: | chr3:48797749-48797985 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 500-748 |
| Cow position: | chr3:26911430-26911171 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 500-767 |
| Cow position: | chr3:44013979-44014249 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 17, 135 |
| Conread position: | 505-748 |
| Cow position: | chr3:12645396-12645642 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 506-746 |
| Cow position: | chr3:58332952-58332707 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 506-753 |
| Cow position: | chr3:79706945-79706696 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 515-746 |
| Cow position: | chr3:37410766-37410995 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 84, 109 |
| Conread position: | 515-748 |
| Cow position: | chr3:59118622-59118851 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 518-748 |
| Cow position: | chr3:15293726-15293495 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 22 |
| Conread position: | 519-778 |
| Cow position: | chr3:47129847-47130108 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 522-748 |
| Cow position: | chr3:66349009-66349229 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 523-744 |
| Cow position: | chr3:51176086-51176302 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 540-746 |
| Cow position: | chr3:73781893-73781692 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 546-743 |
| Cow position: | chr3:27941397-27941197 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 546-748 |
| Cow position: | chr3:24207209-24207012 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 546-748 |
| Cow position: | chr3:55279130-55278927 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 547-748 |
| Cow position: | chr3:18187622-18187828 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 547-751 |
| Cow position: | chr3:37620960-37620756 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 132, 74 |
| Conread position: | 551-746 |
| Cow position: | chr3:73041745-73041553 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 554-748 |
| Cow position: | chr3:20028217-20028412 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 562-752 |
| Cow position: | chr3:81068183-81068377 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.