Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 480-748 |
| Cow position: | chr5:45886908-45886650 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 179, 20 |
| Conread position: | 482-748 |
| Cow position: | chr5:29705261-29704993 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 487-748 |
| Cow position: | chr5:15631841-15631583 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 487-748 |
| Cow position: | chr5:37128102-37128362 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 491-732 |
| Cow position: | chr5:56539204-56538965 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 492-748 |
| Cow position: | chr5:6567136-6567389 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 498-704 |
| Cow position: | chr5:55644801-55644601 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 47 |
| Conread position: | 498-748 |
| Cow position: | chr5:11978587-11978341 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 500-742 |
| Cow position: | chr5:24891338-24891580 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 500-743 |
| Cow position: | chr5:44504161-44504408 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 500-752 |
| Cow position: | chr5:13974805-13974555 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 505-746 |
| Cow position: | chr5:38807624-38807388 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 505-747 |
| Cow position: | chr5:74583421-74583181 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 508-659 |
| Cow position: | chr5:37240207-37240358 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 514-748 |
| Cow position: | chr5:29203404-29203635 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 518-747 |
| Cow position: | chr5:73291129-73291353 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 523-749 |
| Cow position: | chr5:54347866-54347639 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 523-754 |
| Cow position: | chr5:15674913-15674680 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 539-752 |
| Cow position: | chr5:70731257-70731469 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 542-748 |
| Cow position: | chr5:73394957-73395164 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 193 |
| Conread position: | 546-747 |
| Cow position: | chr5:60223414-60223212 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 546-748 |
| Cow position: | chr5:9922266-9922464 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 162, 51 |
| Conread position: | 546-748 |
| Cow position: | chr5:28783911-28783708 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 549-705 |
| Cow position: | chr5:40663029-40663185 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 550-748 |
| Cow position: | chr5:22326480-22326682 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 550-748 |
| Cow position: | chr5:26217390-26217587 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 552-707 |
| Cow position: | chr5:12248983-12249137 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 552-743 |
| Cow position: | chr5:20042451-20042644 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 554-748 |
| Cow position: | chr5:49788907-49788711 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 554-753 |
| Cow position: | chr5:39313459-39313258 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 556-751 |
| Cow position: | chr5:40704594-40704792 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 560-741 |
| Cow position: | chr5:5212859-5213041 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.