Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 468-746 |
| Cow position: | chr6:61047513-61047239 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 476-707 |
| Cow position: | chr6:26343207-26343440 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 476-758 |
| Cow position: | chr6:26346725-26347013 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 480-734 |
| Cow position: | chr6:51708934-51708682 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 484-705 |
| Cow position: | chr6:23683398-23683611 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 484-747 |
| Cow position: | chr6:60112794-60113050 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 484-748 |
| Cow position: | chr6:67536712-67536964 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 485-748 |
| Cow position: | chr6:20567569-20567829 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 487-747 |
| Cow position: | chr6:28987447-28987690 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 498-738 |
| Cow position: | chr6:40867944-40868179 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 498-738 |
| Cow position: | chr6:53875398-53875157 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 499-748 |
| Cow position: | chr6:35843633-35843880 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 505-748 |
| Cow position: | chr6:60606496-60606255 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 505-749 |
| Cow position: | chr6:1325096-1325341 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 505-749 |
| Cow position: | chr6:6763148-6762910 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 515-744 |
| Cow position: | chr6:17833671-17833900 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 515-746 |
| Cow position: | chr6:60734718-60734486 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 515-748 |
| Cow position: | chr6:24259594-24259361 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 80, 177 |
| Conread position: | 517-715 |
| Cow position: | chr6:1974795-1974602 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 532-742 |
| Cow position: | chr6:61995864-61995654 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 546-746 |
| Cow position: | chr6:10255013-10255215 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 546-748 |
| Cow position: | chr6:1632813-1633016 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 550-747 |
| Cow position: | chr6:35082385-35082192 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 554-748 |
| Cow position: | chr6:1587127-1587322 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 567-746 |
| Cow position: | chr6:26052780-26052955 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 587-756 |
| Cow position: | chr6:54939353-54939523 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 600-748 |
| Cow position: | chr6:23199119-23199269 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-766 |
| Cow position: | chr6:49938678-49938522 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 143 |
Show alignments to all cow chromosomes.