Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C06.5 |
| Conread position: | 435-754 |
| Cow position: | chr9:63318987-63318672 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 482-748 |
| Cow position: | chr9:56718559-56718823 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 483-748 |
| Cow position: | chr9:3888981-3889243 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 486-714 |
| Cow position: | chr9:11332076-11332310 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 486-746 |
| Cow position: | chr9:26173881-26173623 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 168, 60 |
| Conread position: | 487-748 |
| Cow position: | chr9:28447772-28448028 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 487-753 |
| Cow position: | chr9:19143460-19143205 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 487-762 |
| Cow position: | chr9:26399382-26399652 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 108, 10 |
| Conread position: | 493-643 |
| Cow position: | chr9:32620368-32620220 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 7 |
| Conread position: | 496-666 |
| Cow position: | chr9:54147522-54147356 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 498-683 |
| Cow position: | chr9:14935964-14935788 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 46 |
| Conread position: | 500-746 |
| Cow position: | chr9:44328664-44328416 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 501-749 |
| Cow position: | chr9:23410316-23410564 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 506-748 |
| Cow position: | chr9:8388780-8389015 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 516-750 |
| Cow position: | chr9:10301871-10301636 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 523-748 |
| Cow position: | chr9:54024145-54023918 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 525-746 |
| Cow position: | chr9:15330036-15330260 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 525-748 |
| Cow position: | chr9:12444526-12444746 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 531-750 |
| Cow position: | chr9:36042595-36042377 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 540-751 |
| Cow position: | chr9:38078512-38078303 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 543-748 |
| Cow position: | chr9:23407098-23406893 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 544-744 |
| Cow position: | chr9:48198612-48198811 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 162, 58 |
| Conread position: | 546-748 |
| Cow position: | chr9:54519970-54520170 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 549-741 |
| Cow position: | chr9:48305100-48305292 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 550-747 |
| Cow position: | chr9:50787504-50787706 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 551-746 |
| Cow position: | chr9:49120017-49119824 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 552-748 |
| Cow position: | chr9:16095964-16096158 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 552-764 |
| Cow position: | chr9:13170875-13171090 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 69 |
| Conread position: | 553-742 |
| Cow position: | chr9:10336711-10336523 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 556-748 |
| Cow position: | chr9:50601124-50600934 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 66 |
Show alignments to all cow chromosomes.