• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8020C21.3
        

               
Conread position:
               
14-499
               

               
Cow position:
               
chr1:38384135-38383649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
16-634
               

               
Cow position:
               
chr1:18963355-18962690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
36, 230
               

               
Conread position:
               
22-455
               

               
Cow position:
               
chr1:92008143-92007679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
22-476
               

               
Cow position:
               
chr1:15437544-15437059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 211
               

               
Conread position:
               
22-481
               

               
Cow position:
               
chr1:7826343-7826838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
22-481
               

               
Cow position:
               
chr1:9260879-9261370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 255
               

               
Conread position:
               
22-481
               

               
Cow position:
               
chr1:30716312-30715817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
22-490
               

               
Cow position:
               
chr1:19237134-19236637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
7, 202
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:8556061-8556739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
7, 344
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:11290230-11289552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:28713414-28714092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 650
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:29364782-29365461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:40057488-40058158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:76877405-76878085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
7, 263
               

               
Conread position:
               
22-648
               

               
Cow position:
               
chr1:99988876-99989560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 407
               

               
Conread position:
               
22-662
               

               
Cow position:
               
chr1:77747117-77747815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
29-648
               

               
Cow position:
               
chr1:53422281-53422950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
21, 202
               

               
Conread position:
               
32-648
               

               
Cow position:
               
chr1:82478375-82479038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 199
               

               
Conread position:
               
36-442
               

               
Cow position:
               
chr1:20831246-20831679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
36-453
               

               
Cow position:
               
chr1:59206683-59206232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
36-634
               

               
Cow position:
               
chr1:56725550-56726208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
36-639
               

               
Cow position:
               
chr1:39546168-39546826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 393
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:55274647-55273989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
14, 613
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:67832749-67832083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
16, 198
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:72184477-72183825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:73434937-73434272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:91901420-91902072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
36-648
               

               
Cow position:
               
chr1:100708464-100709124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
36-671
               

               
Cow position:
               
chr1:57971183-57970516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
38-484
               

               
Cow position:
               
chr1:57422423-57421942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
39-481
               

               
Cow position:
               
chr1:90973342-90973819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 430
               

               
Conread position:
               
39-486
               

               
Cow position:
               
chr1:57570229-57570709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 128
               

               
Conread position:
               
39-633
               

               
Cow position:
               
chr1:28568313-28567686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
39-648
               

               
Cow position:
               
chr1:24441652-24440994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
40-434
               

               
Cow position:
               
chr1:71678117-71677694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 231
               

               
Conread position:
               
43-448
               

               
Cow position:
               
chr1:50940618-50940193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
49-371
               

               
Cow position:
               
chr1:31813410-31813749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 171
               

               
Conread position:
               
49-476
               

               
Cow position:
               
chr1:22726700-22727153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 182
               

               
Conread position:
               
49-478
               

               
Cow position:
               
chr1:30064765-30065223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 166
               

               
Conread position:
               
49-492
               

               
Cow position:
               
chr1:68456683-68457136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
51-469
               

               
Cow position:
               
chr1:6197891-6197441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
51-490
               

               
Cow position:
               
chr1:69246243-69246698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
51-648
               

               
Cow position:
               
chr1:8471758-8471106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
51-657
               

               
Cow position:
               
chr1:31363691-31363040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
52-648
               

               
Cow position:
               
chr1:86593897-86593251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 190
               

               
Conread position:
               
53-648
               

               
Cow position:
               
chr1:33853689-33854335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
59-614
               

               
Cow position:
               
chr1:9525939-9525327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
64-461
               

               
Cow position:
               
chr1:77865998-77866411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
114-430
               

               
Cow position:
               
chr1:78362307-78362641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
114-598
               

               
Cow position:
               
chr1:30649705-30649181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
114-648
               

               
Cow position:
               
chr1:32837218-32837766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
115-469
               

               
Cow position:
               
chr1:50256994-50257358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
117-490
               

               
Cow position:
               
chr1:99108760-99108360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
117-647
               

               
Cow position:
               
chr1:92280301-92279741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
118-444
               

               
Cow position:
               
chr1:31265141-31264809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
122-671
               

               
Cow position:
               
chr1:57695154-57694567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
128-490
               

               
Cow position:
               
chr1:70417374-70416996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
128-672
               

               
Cow position:
               
chr1:51845121-51844549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
130-472
               

               
Cow position:
               
chr1:82383902-82384251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
130-490
               

               
Cow position:
               
chr1:52776070-52775695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 204
               

               
Conread position:
               
136-643
               

               
Cow position:
               
chr1:71898683-71899210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 258
               

               
Conread position:
               
138-490
               

               
Cow position:
               
chr1:85824939-85825294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
142-479
               

               
Cow position:
               
chr1:33352033-33352368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
142-672
               

               
Cow position:
               
chr1:93426770-93426211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
145-648
               

               
Cow position:
               
chr1:91104551-91105095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
150-475
               

               
Cow position:
               
chr1:81839631-81839302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
153-482
               

               
Cow position:
               
chr1:100888417-100888756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
153-498
               

               
Cow position:
               
chr1:86612624-86612978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
153-645
               

               
Cow position:
               
chr1:72113527-72114038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
153-648
               

               
Cow position:
               
chr1:21677329-21677854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 191
               

               
Conread position:
               
153-648
               

               
Cow position:
               
chr1:57363811-57363279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
153-657
               

               
Cow position:
               
chr1:102322577-102322039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
155-476
               

               
Cow position:
               
chr1:22631491-22631153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 256
               

               
Conread position:
               
155-480
               

               
Cow position:
               
chr1:38421266-38421597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
155-490
               

               
Cow position:
               
chr1:76702131-76701782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
155-498
               

               
Cow position:
               
chr1:43568972-43568615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
155-672
               

               
Cow position:
               
chr1:61537476-61536912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
156-352
               

               
Cow position:
               
chr1:88394129-88393929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 183
               

               
Conread position:
               
156-429
               

               
Cow position:
               
chr1:30693603-30693886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-459
               

               
Cow position:
               
chr1:57744684-57744387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
156-473
               

               
Cow position:
               
chr1:28175681-28175349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
156-473
               

               
Cow position:
               
chr1:72036770-72036451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
156-473
               

               
Cow position:
               
chr1:102551527-102551865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
156-474
               

               
Cow position:
               
chr1:81861497-81861172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
22, 77
               

               
Conread position:
               
156-476
               

               
Cow position:
               
chr1:38477837-38478164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
156-476
               

               
Cow position:
               
chr1:68093174-68093508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
156-476
               

               
Cow position:
               
chr1:84442471-84442130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-477
               

               
Cow position:
               
chr1:95726516-95726177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
156-481
               

               
Cow position:
               
chr1:13437943-13437598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
156-481
               

               
Cow position:
               
chr1:70863562-70863898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-481
               

               
Cow position:
               
chr1:82655171-82655511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 297
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr1:16273090-16273429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr1:89186918-89186569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr1:90912350-90912700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-490
               

               
Cow position:
               
chr1:22216423-22216769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
156-490
               

               
Cow position:
               
chr1:33714613-33714963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-490
               

               
Cow position:
               
chr1:76740331-76739977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 250
               

               
Conread position:
               
156-490
               

               
Cow position:
               
chr1:101796195-101796538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
156-621
               

               
Cow position:
               
chr1:53366448-53366951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
156-625
               

               
Cow position:
               
chr1:34914129-34914624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
156-637
               

               
Cow position:
               
chr1:56191628-56191113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-646
               

               
Cow position:
               
chr1:12058998-12058469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 250
               

               
Conread position:
               
156-647
               

               
Cow position:
               
chr1:32565407-32564875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-647
               

               
Cow position:
               
chr1:39142634-39142115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:3383791-3383264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:13251995-13251463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:16118023-16118528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:21995489-21994959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 250
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:28875612-28876145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 232
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:31239706-31239175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:40682204-40681678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:56141833-56141300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:58339451-58339975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:59484335-59483810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:60341571-60342104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:61332437-61331909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:68603103-68602577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 180
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:69405678-69406211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:73064814-73064282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:82863337-82863871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:82910304-82909776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:85777928-85777406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:86545616-86545084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:86704670-86705205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:89483650-89484169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 168
               

               
Conread position:
               
156-648
               

               
Cow position:
               
chr1:93857041-93857576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
156-662
               

               
Cow position:
               
chr1:81926627-81926111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
157-473
               

               
Cow position:
               
chr1:88676005-88676339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
157-490
               

               
Cow position:
               
chr1:22241253-22241599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
158-473
               

               
Cow position:
               
chr1:100420126-100420455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 242
               

               
Conread position:
               
158-477
               

               
Cow position:
               
chr1:36540024-36540364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
158-598
               

               
Cow position:
               
chr1:30532495-30532035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
158-646
               

               
Cow position:
               
chr1:61139963-61140491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 248
               

               
Conread position:
               
158-659
               

               
Cow position:
               
chr1:22346196-22346723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
158-672
               

               
Cow position:
               
chr1:99980844-99981389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
159-476
               

               
Cow position:
               
chr1:86507101-86506769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
159-634
               

               
Cow position:
               
chr1:17010167-17009650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
160-648
               

               
Cow position:
               
chr1:58171268-58171793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
162-441
               

               
Cow position:
               
chr1:68365835-68366125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
165-476
               

               
Cow position:
               
chr1:54392503-54392174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 185
               

               
Conread position:
               
165-647
               

               
Cow position:
               
chr1:32912215-32912701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
167-473
               

               
Cow position:
               
chr1:27493508-27493832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
168-481
               

               
Cow position:
               
chr1:88293897-88294230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
169-671
               

               
Cow position:
               
chr1:29902646-29902107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
176-469
               

               
Cow position:
               
chr1:23972986-23973283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
177-476
               

               
Cow position:
               
chr1:21224773-21224459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
177-645
               

               
Cow position:
               
chr1:54932469-54932978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
183-492
               

               
Cow position:
               
chr1:44677254-44677559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
186-620
               

               
Cow position:
               
chr1:31400851-31400382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
189-621
               

               
Cow position:
               
chr1:7164644-7165117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
189-648
               

               
Cow position:
               
chr1:7196664-7196166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
191-648
               

               
Cow position:
               
chr1:69769369-69769872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
192-621
               

               
Cow position:
               
chr1:57659184-57659645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
193-634
               

               
Cow position:
               
chr1:33364411-33363930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
28, 211
               

               
Conread position:
               
197-648
               

               
Cow position:
               
chr1:68275074-68275556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
198-648
               

               
Cow position:
               
chr1:61562608-61563090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
201-635
               

               
Cow position:
               
chr1:72996558-72997021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
203-490
               

               
Cow position:
               
chr1:89790726-89790440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
204-452
               

               
Cow position:
               
chr1:31530858-31531120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
204-492
               

               
Cow position:
               
chr1:41780526-41780222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr1:39250886-39250405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 226
               

               
Conread position:
               
204-672
               

               
Cow position:
               
chr1:48686442-48685985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
206-468
               

               
Cow position:
               
chr1:71017768-71017496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
207-672
               

               
Cow position:
               
chr1:6328965-6329440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
214-648
               

               
Cow position:
               
chr1:92034680-92035151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
218-648
               

               
Cow position:
               
chr1:21576136-21576601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 183
               

               
Conread position:
               
220-490
               

               
Cow position:
               
chr1:73445011-73444723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
220-671
               

               
Cow position:
               
chr1:23579207-23578724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
55, 176
               

               
Conread position:
               
227-476
               

               
Cow position:
               
chr1:29608504-29608242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
235-662
               

               
Cow position:
               
chr1:8745102-8745569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
236-648
               

               
Cow position:
               
chr1:4209308-4208860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
241-492
               

               
Cow position:
               
chr1:30439601-30439862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 160
               

               
Conread position:
               
244-648
               

               
Cow position:
               
chr1:49267496-49267936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
251-646
               

               
Cow position:
               
chr1:25089048-25088621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
6, 143
               

               
Conread position:
               
253-638
               

               
Cow position:
               
chr1:23098280-23098694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
254-460
               

               
Cow position:
               
chr1:82566826-82567046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
255-648
               

               
Cow position:
               
chr1:61096122-61096550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 402
               

               
Conread position:
               
259-491
               

               
Cow position:
               
chr1:24563106-24562870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
259-648
               

               
Cow position:
               
chr1:71794166-71794586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 6
               

               
Conread position:
               
267-648
               

               
Cow position:
               
chr1:61203023-61203438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 129
               

               
Conread position:
               
277-648
               

               
Cow position:
               
chr1:31724938-31724545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
280-492
               

               
Cow position:
               
chr1:72086251-72086471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
286-648
               

               
Cow position:
               
chr1:17437015-17436621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
288-491
               

               
Cow position:
               
chr1:24572459-24572257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
289-492
               

               
Cow position:
               
chr1:52336077-52335864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
289-598
               

               
Cow position:
               
chr1:19184811-19185150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
289-659
               

               
Cow position:
               
chr1:86600352-86599951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
291-480
               

               
Cow position:
               
chr1:59014674-59014475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
291-648
               

               
Cow position:
               
chr1:57525950-57526329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
336-672
               

               
Cow position:
               
chr1:76850067-76849699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
350-648
               

               
Cow position:
               
chr1:46802257-46802561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
392-648
               

               
Cow position:
               
chr1:26607788-26607512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
524-672
               

               
Cow position:
               
chr1:41516109-41515956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
525-648
               

               
Cow position:
               
chr1:66504659-66504785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
525-672
               

               
Cow position:
               
chr1:78941312-78941159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               
Show alignments to all cow chromosomes.