Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 19-481 |
| Cow position: | chr12:24993653-24993155 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 22-481 |
| Cow position: | chr12:22571169-22571655 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 22-648 |
| Cow position: | chr12:17717618-17718300 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr12:34175674-34176364 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 446 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr12:38892679-38893363 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 29-634 |
| Cow position: | chr12:22593083-22593742 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 427 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 392 |
| Conread position: | 35-672 |
| Cow position: | chr12:8137619-8136957 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 36-481 |
| Cow position: | chr12:36212589-36213068 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 196 |
| Conread position: | 36-492 |
| Cow position: | chr12:33121731-33122202 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 36-648 |
| Cow position: | chr12:25267001-25266333 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-648 |
| Cow position: | chr12:42605844-42605176 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 36-662 |
| Cow position: | chr12:1887009-1886334 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 434 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 49-476 |
| Cow position: | chr12:6549258-6549700 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 51-648 |
| Cow position: | chr12:23138969-23138329 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 420 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 184 |
| Conread position: | 115-671 |
| Cow position: | chr12:12294969-12295559 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 117-480 |
| Cow position: | chr12:18467219-18467597 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 145-482 |
| Cow position: | chr12:8143173-8142833 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 153-476 |
| Cow position: | chr12:31330440-31330100 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 155-492 |
| Cow position: | chr12:30140900-30141245 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 156-470 |
| Cow position: | chr12:21252110-21251779 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 156-475 |
| Cow position: | chr12:730551-730883 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 156-476 |
| Cow position: | chr12:6078634-6078305 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 156-486 |
| Cow position: | chr12:27853480-27853128 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-492 |
| Cow position: | chr12:12241550-12241892 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 156-511 |
| Cow position: | chr12:1056918-1057296 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 156-527 |
| Cow position: | chr12:35633040-35632667 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 156-596 |
| Cow position: | chr12:20995290-20994812 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 156-617 |
| Cow position: | chr12:34964831-34964330 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-647 |
| Cow position: | chr12:11100715-11101247 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:3363412-3363943 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:8675607-8675065 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 260 |
| Conread position: | 156-648 |
| Cow position: | chr12:10358165-10358695 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:22203204-22202668 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 357 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 253 |
| Conread position: | 156-648 |
| Cow position: | chr12:32656022-32656554 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:35548661-35548127 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:36406201-36405668 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 351 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:37561475-37562009 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 351 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr12:42857059-42856531 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 157-476 |
| Cow position: | chr12:25261044-25260708 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 172 |
| Conread position: | 157-638 |
| Cow position: | chr12:5550600-5550099 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 162-467 |
| Cow position: | chr12:8343550-8343228 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 22, 254 |
| Conread position: | 173-492 |
| Cow position: | chr12:8890558-8890223 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 177-648 |
| Cow position: | chr12:6106859-6106349 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 184-442 |
| Cow position: | chr12:24939031-24939307 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 184-648 |
| Cow position: | chr12:45144552-45145052 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 37, 269 |
| Conread position: | 185-648 |
| Cow position: | chr12:1437425-1437928 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 188-645 |
| Cow position: | chr12:14569310-14568818 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 191-647 |
| Cow position: | chr12:42192743-42193233 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 213 |
| Conread position: | 192-648 |
| Cow position: | chr12:23100528-23100044 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 410 |
| Conread position: | 202-647 |
| Cow position: | chr12:4664042-4663554 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 269 |
| Conread position: | 204-473 |
| Cow position: | chr12:13258948-13259223 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 219-486 |
| Cow position: | chr12:27930260-27929974 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 185 |
| Conread position: | 220-481 |
| Cow position: | chr12:16802509-16802230 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 227-476 |
| Cow position: | chr12:32284443-32284706 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 221 |
| Conread position: | 230-647 |
| Cow position: | chr12:12840004-12839578 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 232-648 |
| Cow position: | chr12:62660-62208 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 250-648 |
| Cow position: | chr12:47775260-47775681 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 253-648 |
| Cow position: | chr12:41338658-41338231 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 418 |
| Conread position: | 253-655 |
| Cow position: | chr12:21091202-21090771 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 33, 219 |
| Conread position: | 282-498 |
| Cow position: | chr12:21201403-21201621 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 286-583 |
| Cow position: | chr12:15940513-15940192 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 290-622 |
| Cow position: | chr12:25144090-25143739 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 292-492 |
| Cow position: | chr12:7868831-7869031 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 306-648 |
| Cow position: | chr12:1469498-1469125 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 307-623 |
| Cow position: | chr12:32012127-32011807 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 197 |
| Conread position: | 354-648 |
| Cow position: | chr12:31028135-31027821 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 422-646 |
| Cow position: | chr12:8641546-8641776 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 524-649 |
| Cow position: | chr12:30501515-30501641 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.