Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 3-473
Cow position: chr14:29774143-29773658 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 318
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 36

Conread position: 9-648
Cow position: chr14:13861545-13860880 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 428
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 64, 30

Conread position: 12-476
Cow position: chr14:46434596-46435083 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 317
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 23

Conread position: 18-648
Cow position: chr14:2288238-2288914 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 437
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 11, 393

Conread position: 22-490
Cow position: chr14:46222064-46222569 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 333
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position: chr14:12741061-12740388 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 440
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 7, 211

Conread position: 22-648
Cow position: chr14:22104574-22103896 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 214

Conread position: 23-672
Cow position: chr14:34041127-34040449 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 444
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 62

Conread position: 36-481
Cow position: chr14:17489329-17488850 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 313
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 0

Conread position: 36-492
Cow position: chr14:21049678-21049195 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 319
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 42, 407

Conread position: 36-621
Cow position: chr14:1660450-1661090 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 49-435
Cow position: chr14:38460443-38460024 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 49-473
Cow position: chr14:37256173-37256622 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 293
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 51

Conread position: 49-648
Cow position: chr14:17772152-17771521 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 412
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 29, 212

Conread position: 51-648
Cow position: chr14:23255327-23254677 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 143

Conread position: 114-486
Cow position: chr14:11835718-11836115 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 5

Conread position: 115-660
Cow position: chr14:46548234-46548813 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 385
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 44, 26

Conread position: 116-657
Cow position: chr14:469344-469921 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 364
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 455

Conread position: 121-646
Cow position: chr14:44317714-44318243 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 351
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 142

Conread position: 130-648
Cow position: chr14:39935873-39936419 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 352
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 27

Conread position: 133-480
Cow position: chr14:48706332-48706701 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 239
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 49

Conread position: 150-474
Cow position: chr14:33079597-33079933 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 77

Conread position: 156-443
Cow position: chr14:13781994-13782294 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 24

Conread position: 156-446
Cow position: chr14:45191120-45191418 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 33

Conread position: 156-466
Cow position: chr14:13580962-13581289 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 61

Conread position: 156-471
Cow position: chr14:34999289-34999609 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 50, 9

Conread position: 156-476
Cow position: chr14:35383515-35383184 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 79

Conread position: 156-486
Cow position: chr14:11475162-11474815 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 22, 61

Conread position: 156-490
Cow position: chr14:48147793-48147450 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 28

Conread position: 156-492
Cow position: chr14:17689256-17689612 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 244
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 61

Conread position: 156-498
Cow position: chr14:44889100-44888740 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 156-498
Cow position: chr14:46123262-46123606 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 249
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 28

Conread position: 156-645
Cow position: chr14:17763257-17762728 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 349
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 73

Conread position: 156-647
Cow position: chr14:5531468-5532000 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 356
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 250

Conread position: 156-648
Cow position: chr14:749469-748938 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 353
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr14:9046966-9047499 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 257

Conread position: 156-648
Cow position: chr14:9450401-9449868 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 356
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr14:13237671-13237138 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 357
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 22, 250

Conread position: 156-648
Cow position: chr14:16997906-16997378 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 351
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 29, 61

Conread position: 156-648
Cow position: chr14:19549328-19549856 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 346
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr14:27041251-27040722 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 349
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 22, 246

Conread position: 156-648
Cow position: chr14:29045545-29045012 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr14:37982163-37981663 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 132

Conread position: 156-648
Cow position: chr14:50113498-50114028 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 22, 61

Conread position: 156-667
Cow position: chr14:2296837-2297371 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 64

Conread position: 157-483
Cow position: chr14:12612130-12612473 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 87

Conread position: 157-625
Cow position: chr14:45083810-45084273 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 308
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 60

Conread position: 157-659
Cow position: chr14:44292767-44293306 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 348
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 59

Conread position: 158-600
Cow position: chr14:37335571-37335095 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 322
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 48, 18

Conread position: 158-648
Cow position: chr14:36710907-36710401 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 329
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 98

Conread position: 159-648
Cow position: chr14:46302035-46302566 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 58

Conread position: 159-660
Cow position: chr14:35363721-35363194 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 111

Conread position: 169-647
Cow position: chr14:44583394-44583899 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 333
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 37, 59

Conread position: 176-636
Cow position: chr14:11636714-11637205 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 41

Conread position: 177-478
Cow position: chr14:37135963-37136282 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 33, 39

Conread position: 177-648
Cow position: chr14:7226558-7227069 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 336
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 177-648
Cow position: chr14:13463584-13464059 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 328
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 39

Conread position: 183-479
Cow position: chr14:35496688-35496998 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 33

Conread position: 183-647
Cow position: chr14:33679222-33679709 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 33

Conread position: 184-648
Cow position: chr14:37226330-37226834 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 344
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 221

Conread position: 189-595
Cow position: chr14:24992967-24992535 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 291
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 30

Conread position: 189-648
Cow position: chr14:34167470-34167963 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 29, 44

Conread position: 200-492
Cow position: chr14:33690357-33690657 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 6, 16

Conread position: 205-589
Cow position: chr14:29795666-29795245 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 285
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 150

Conread position: 215-465
Cow position: chr14:28333924-28334183 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 12

Conread position: 217-476
Cow position: chr14:38707752-38708023 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 10

Conread position: 218-646
Cow position: chr14:35502027-35502478 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 303
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 25, 36

Conread position: 220-672
Cow position: chr14:16189760-16190250 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 40

Conread position: 224-672
Cow position: chr14:39321058-39321529 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 131, 8

Conread position: 226-490
Cow position: chr14:25817425-25817701 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 41, 271

Conread position: 227-477
Cow position: chr14:13415645-13415900 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 110

Conread position: 227-646
Cow position: chr14:44254594-44254165 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 274
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 218

Conread position: 227-648
Cow position: chr14:35419102-35419542 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 303
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 91

Conread position: 227-672
Cow position: chr14:17614916-17615382 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 311
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 167

Conread position: 228-648
Cow position: chr14:47578823-47579279 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 240-490
Cow position: chr14:9510332-9510072 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 11

Conread position: 242-648
Cow position: chr14:35427726-35428159 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 283
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 76, 34

Conread position: 247-598
Cow position: chr14:24835793-24836178 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 259
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 211

Conread position: 276-461
Cow position: chr14:23627073-23626880 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 280-492
Cow position: chr14:34905788-34906009 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 116

Conread position: 290-492
Cow position: chr14:28580800-28580590 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 105

Conread position: 291-475
Cow position: chr14:31150833-31151019 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 148

Conread position: 301-499
Cow position: chr14:9512630-9512439 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 45

Conread position: 350-648
Cow position: chr14:21533494-21533804 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 203
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 132

Conread position: 394-647
Cow position: chr14:37044165-37044434 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 51

Conread position: 525-646
Cow position: chr14:25658975-25658852 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 526-672
Cow position: chr14:8965436-8965286 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 0

Show alignments to all cow chromosomes.