Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 15-481
Cow position:
Alignm length: 501
Alignm identity: 328
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 71

Conread position: 18-648
Cow position:
Alignm length: 682
Alignm identity: 436
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 63

Conread position: 19-476
Cow position:
Alignm length: 488
Alignm identity: 322
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 120

Conread position: 19-619
Cow position:
Alignm length: 652
Alignm identity: 420
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 10, 231

Conread position: 19-648
Cow position:
Alignm length: 687
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 22-442
Cow position:
Alignm length: 456
Alignm identity: 305
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 7, 0

Conread position: 22-481
Cow position:
Alignm length: 496
Alignm identity: 327
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 7, 0

Conread position: 22-610
Cow position:
Alignm length: 646
Alignm identity: 418
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 7, 594

Conread position: 22-648
Cow position:
Alignm length: 680
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position:
Alignm length: 684
Alignm identity: 446
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 7, 218

Conread position: 22-648
Cow position:
Alignm length: 684
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 213

Conread position: 22-648
Cow position:
Alignm length: 684
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 36-473
Cow position:
Alignm length: 473
Alignm identity: 311
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 13

Conread position: 36-574
Cow position:
Alignm length: 574
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 36-634
Cow position:
Alignm length: 649
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position:
Alignm length: 667
Alignm identity: 429
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 16, 49

Conread position: 36-648
Cow position:
Alignm length: 648
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 195

Conread position: 36-648
Cow position:
Alignm length: 666
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 234

Conread position: 49-490
Cow position:
Alignm length: 479
Alignm identity: 320
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 24, 117

Conread position: 49-529
Cow position:
Alignm length: 511
Alignm identity: 337
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 25, 225

Conread position: 49-648
Cow position:
Alignm length: 656
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 51-618
Cow position:
Alignm length: 619
Alignm identity: 406
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 28, 40

Conread position: 51-648
Cow position:
Alignm length: 656
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 375

Conread position: 51-648
Cow position:
Alignm length: 655
Alignm identity: 426
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 22, 39

Conread position: 55-657
Cow position:
Alignm length: 656
Alignm identity: 426
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 173

Conread position: 55-659
Cow position:
Alignm length: 654
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 172

Conread position: 117-638
Cow position:
Alignm length: 551
Alignm identity: 356
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 40, 105

Conread position: 128-657
Cow position:
Alignm length: 571
Alignm identity: 378
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 31, 95

Conread position: 133-666
Cow position:
Alignm length: 570
Alignm identity: 359
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 120

Conread position: 138-671
Cow position:
Alignm length: 573
Alignm identity: 370
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 19

Conread position: 138-671
Cow position:
Alignm length: 569
Alignm identity: 373
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 46, 20

Conread position: 153-476
Cow position:
Alignm length: 341
Alignm identity: 235
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 29, 119

Conread position: 153-621
Cow position:
Alignm length: 510
Alignm identity: 343
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 42, 64

Conread position: 155-489
Cow position:
Alignm length: 355
Alignm identity: 232
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 46

Conread position: 156-432
Cow position:
Alignm length: 293
Alignm identity: 205
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 241

Conread position: 156-432
Cow position:
Alignm length: 297
Alignm identity: 206
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 65

Conread position: 156-452
Cow position:
Alignm length: 308
Alignm identity: 198
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 72

Conread position: 156-472
Cow position:
Alignm length: 320
Alignm identity: 211
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 61

Conread position: 156-474
Cow position:
Alignm length: 341
Alignm identity: 232
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 251

Conread position: 156-474
Cow position:
Alignm length: 340
Alignm identity: 232
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 156-475
Cow position:
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 57

Conread position: 156-476
Cow position:
Alignm length: 341
Alignm identity: 225
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 100

Conread position: 156-476
Cow position:
Alignm length: 338
Alignm identity: 232
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 61

Conread position: 156-481
Cow position:
Alignm length: 346
Alignm identity: 236
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 23, 256

Conread position: 156-483
Cow position:
Alignm length: 347
Alignm identity: 237
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 61

Conread position: 156-489
Cow position:
Alignm length: 351
Alignm identity: 230
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 33

Conread position: 156-492
Cow position:
Alignm length: 352
Alignm identity: 235
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 175

Conread position: 156-492
Cow position:
Alignm length: 356
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 219

Conread position: 156-497
Cow position:
Alignm length: 359
Alignm identity: 248
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 62

Conread position: 156-498
Cow position:
Alignm length: 360
Alignm identity: 254
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 61

Conread position: 156-598
Cow position:
Alignm length: 484
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-598
Cow position:
Alignm length: 484
Alignm identity: 329
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 61

Conread position: 156-621
Cow position:
Alignm length: 503
Alignm identity: 338
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 22, 60

Conread position: 156-630
Cow position:
Alignm length: 515
Alignm identity: 345
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 65

Conread position: 156-637
Cow position:
Alignm length: 504
Alignm identity: 331
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 66, 106

Conread position: 156-648
Cow position:
Alignm length: 537
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 347
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 350
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 29, 259

Conread position: 156-648
Cow position:
Alignm length: 533
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 249

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 537
Alignm identity: 358
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 37

Conread position: 156-648
Cow position:
Alignm length: 535
Alignm identity: 355
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 440

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 536
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 258

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 34

Conread position: 156-648
Cow position:
Alignm length: 535
Alignm identity: 346
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position:
Alignm length: 535
Alignm identity: 361
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 55

Conread position: 156-648
Cow position:
Alignm length: 531
Alignm identity: 348
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 63

Conread position: 156-648
Cow position:
Alignm length: 536
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position:
Alignm length: 532
Alignm identity: 351
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 0

Conread position: 156-664
Cow position:
Alignm length: 544
Alignm identity: 360
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 15, 21

Conread position: 156-671
Cow position:
Alignm length: 549
Alignm identity: 351
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 22, 347

Conread position: 158-485
Cow position:
Alignm length: 344
Alignm identity: 239
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 158-486
Cow position:
Alignm length: 343
Alignm identity: 238
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 20, 59

Conread position: 159-648
Cow position:
Alignm length: 508
Alignm identity: 327
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 19, 58

Conread position: 159-663
Cow position:
Alignm length: 530
Alignm identity: 343
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 48

Conread position: 160-648
Cow position:
Alignm length: 535
Alignm identity: 357
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 56

Conread position: 160-660
Cow position:
Alignm length: 537
Alignm identity: 354
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 57

Conread position: 161-490
Cow position:
Alignm length: 349
Alignm identity: 231
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 23, 56

Conread position: 165-648
Cow position:
Alignm length: 524
Alignm identity: 339
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 13, 64

Conread position: 169-648
Cow position:
Alignm length: 519
Alignm identity: 344
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 470

Conread position: 173-672
Cow position:
Alignm length: 537
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 9

Conread position: 175-671
Cow position:
Alignm length: 534
Alignm identity: 349
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 105, 149

Conread position: 176-491
Cow position:
Alignm length: 326
Alignm identity: 234
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 105, 28

Conread position: 177-476
Cow position:
Alignm length: 317
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 39

Conread position: 177-648
Cow position:
Alignm length: 507
Alignm identity: 327
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 39

Conread position: 177-671
Cow position:
Alignm length: 534
Alignm identity: 347
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 29, 39

Conread position: 183-490
Cow position:
Alignm length: 326
Alignm identity: 221
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 48, 23

Conread position: 184-476
Cow position:
Alignm length: 303
Alignm identity: 196
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 212

Conread position: 189-476
Cow position:
Alignm length: 294
Alignm identity: 196
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 17, 93

Conread position: 189-648
Cow position:
Alignm length: 504
Alignm identity: 341
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 27

Conread position: 190-515
Cow position:
Alignm length: 334
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 17

Conread position: 190-648
Cow position:
Alignm length: 490
Alignm identity: 323
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 20, 26

Conread position: 192-648
Cow position:
Alignm length: 495
Alignm identity: 326
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 28

Conread position: 193-648
Cow position:
Alignm length: 493
Alignm identity: 336
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 13, 72

Conread position: 204-648
Cow position:
Alignm length: 471
Alignm identity: 305
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 79, 35

Conread position: 208-648
Cow position:
Alignm length: 467
Alignm identity: 306
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 51

Conread position: 227-648
Cow position:
Alignm length: 460
Alignm identity: 300
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 58, 173

Conread position: 232-490
Cow position:
Alignm length: 268
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 6, 193

Conread position: 235-610
Cow position:
Alignm length: 412
Alignm identity: 266
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 239-636
Cow position:
Alignm length: 433
Alignm identity: 294
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 21, 31

Conread position: 241-672
Cow position:
Alignm length: 460
Alignm identity: 301
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 98

Conread position: 243-477
Cow position:
Alignm length: 244
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 76, 26

Conread position: 254-610
Cow position:
Alignm length: 393
Alignm identity: 256
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 254-648
Cow position:
Alignm length: 427
Alignm identity: 287
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 329

Conread position: 259-592
Cow position:
Alignm length: 362
Alignm identity: 238
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 267

Conread position: 265-490
Cow position:
Alignm length: 239
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 226

Conread position: 280-492
Cow position:
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 124

Conread position: 280-648
Cow position:
Alignm length: 400
Alignm identity: 266
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 212

Conread position: 280-648
Cow position:
Alignm length: 392
Alignm identity: 258
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 110

Conread position: 290-661
Cow position:
Alignm length: 383
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 206

Conread position: 291-648
Cow position:
Alignm length: 386
Alignm identity: 263
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 16

Conread position: 524-660
Cow position:
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 59

Conread position: 524-660
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 77, 30

Conread position: 524-671
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 91

Conread position: 525-670
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Show alignments to all cow chromosomes.