Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 8-473 |
| Cow position: | chr17:41412044-41412518 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 22-481 |
| Cow position: | chr17:3742363-3742858 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-481 |
| Cow position: | chr17:13418603-13419093 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-593 |
| Cow position: | chr17:5307536-5306909 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 411 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr17:23322224-23321543 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 173 |
| Conread position: | 22-662 |
| Cow position: | chr17:10842477-10843163 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 438 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 22-662 |
| Cow position: | chr17:15709790-15709098 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 277 |
| Conread position: | 36-486 |
| Cow position: | chr17:18100864-18100380 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 194 |
| Conread position: | 36-648 |
| Cow position: | chr17:2264406-2265072 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 558 |
| Conread position: | 36-648 |
| Cow position: | chr17:14214819-14214153 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 429 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 180 |
| Conread position: | 36-648 |
| Cow position: | chr17:25738515-25739181 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 436 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 36-648 |
| Cow position: | chr17:29825747-29825084 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 198 |
| Conread position: | 36-671 |
| Cow position: | chr17:34567014-34567701 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 437 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 408 |
| Conread position: | 51-481 |
| Cow position: | chr17:17127201-17127665 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 180 |
| Conread position: | 51-662 |
| Cow position: | chr17:11785127-11785779 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 56-648 |
| Cow position: | chr17:14393902-14394535 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 409 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 26, 228 |
| Conread position: | 99-490 |
| Cow position: | chr17:5999193-5998800 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 119-646 |
| Cow position: | chr17:13707066-13707620 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 128-648 |
| Cow position: | chr17:20694520-20695078 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 370 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 275 |
| Conread position: | 147-476 |
| Cow position: | chr17:20092247-20091919 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 150-478 |
| Cow position: | chr17:19368258-19368598 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 152-648 |
| Cow position: | chr17:26830556-26830031 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 26, 201 |
| Conread position: | 153-461 |
| Cow position: | chr17:41812573-41812892 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 153-487 |
| Cow position: | chr17:43146225-43145875 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 247 |
| Conread position: | 156-481 |
| Cow position: | chr17:452185-452529 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-481 |
| Cow position: | chr17:43990830-43991174 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-486 |
| Cow position: | chr17:20097964-20097619 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 156-489 |
| Cow position: | chr17:16119881-16119529 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-490 |
| Cow position: | chr17:760142-760473 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 156-490 |
| Cow position: | chr17:20233100-20233452 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-490 |
| Cow position: | chr17:24291989-24292335 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 156-648 |
| Cow position: | chr17:253170-253704 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 355 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 252 |
| Conread position: | 156-648 |
| Cow position: | chr17:1655401-1654886 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 468 |
| Conread position: | 156-648 |
| Cow position: | chr17:2176334-2176860 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr17:6122131-6122660 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 156-648 |
| Cow position: | chr17:6262213-6262734 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr17:8211004-8211539 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr17:15140987-15140461 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 156-648 |
| Cow position: | chr17:15327636-15328158 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 156-648 |
| Cow position: | chr17:16855745-16855217 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr17:23040720-23041233 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 156-648 |
| Cow position: | chr17:24027643-24027106 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 156-648 |
| Cow position: | chr17:27792430-27791896 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr17:38828268-38828798 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 156-653 |
| Cow position: | chr17:4297264-4297793 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 156-660 |
| Cow position: | chr17:20085426-20084923 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 347 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 124 |
| Conread position: | 157-622 |
| Cow position: | chr17:10322316-10322809 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 158-490 |
| Cow position: | chr17:3314453-3314801 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 293 |
| Conread position: | 158-596 |
| Cow position: | chr17:7561600-7561144 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 169-648 |
| Cow position: | chr17:4481515-4481005 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 9, 203 |
| Conread position: | 169-668 |
| Cow position: | chr17:10799576-10799047 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 177-476 |
| Cow position: | chr17:13921100-13920782 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 183-661 |
| Cow position: | chr17:15373784-15374302 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 190-660 |
| Cow position: | chr17:32247792-32247314 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 191-499 |
| Cow position: | chr17:27482767-27483095 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 39, 188 |
| Conread position: | 218-648 |
| Cow position: | chr17:20054575-20055014 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 232 |
| Conread position: | 218-666 |
| Cow position: | chr17:17069330-17069817 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 233 |
| Conread position: | 224-481 |
| Cow position: | chr17:29075900-29075637 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 231-485 |
| Cow position: | chr17:22233866-22233600 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 239-648 |
| Cow position: | chr17:14871122-14871548 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 255-648 |
| Cow position: | chr17:20390222-20390651 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 267-481 |
| Cow position: | chr17:20545429-20545656 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 289-594 |
| Cow position: | chr17:11084923-11084589 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 298-648 |
| Cow position: | chr17:1564698-1565061 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 209 |
| Conread position: | 301-500 |
| Cow position: | chr17:38947597-38947795 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 305-672 |
| Cow position: | chr17:41918720-41919090 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 320-656 |
| Cow position: | chr17:1569667-1569331 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 350-657 |
| Cow position: | chr17:31093164-31092839 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 415-666 |
| Cow position: | chr17:32408015-32407753 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 420-648 |
| Cow position: | chr17:8496112-8495875 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 524-670 |
| Cow position: | chr17:5043836-5043683 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.