Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 13-490 |
| Cow position: | chr18:37156324-37155843 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 19-481 |
| Cow position: | chr18:51344518-51345018 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 22-481 |
| Cow position: | chr18:3755363-3755857 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 7, 450 |
| Conread position: | 22-481 |
| Cow position: | chr18:55417146-55417637 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 7, 208 |
| Conread position: | 22-645 |
| Cow position: | chr18:32165506-32164834 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 391 |
| Conread position: | 22-648 |
| Cow position: | chr18:18215927-18216610 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr18:32437683-32437001 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 258 |
| Conread position: | 22-648 |
| Cow position: | chr18:37701070-37700392 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 214 |
| Conread position: | 32-647 |
| Cow position: | chr18:16558134-16558793 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 427 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 34-648 |
| Cow position: | chr18:10221462-10222131 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 36-461 |
| Cow position: | chr18:28674835-28674389 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 36-476 |
| Cow position: | chr18:51662583-51663057 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 367 |
| Conread position: | 36-492 |
| Cow position: | chr18:51273664-51273198 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 36-645 |
| Cow position: | chr18:11272413-11271746 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 404 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 36-648 |
| Cow position: | chr18:604023-603364 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 36-648 |
| Cow position: | chr18:15857614-15858268 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 190 |
| Conread position: | 36-648 |
| Cow position: | chr18:16174170-16173512 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 436 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 16, 192 |
| Conread position: | 36-648 |
| Cow position: | chr18:25922826-25923486 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 433 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 36-648 |
| Cow position: | chr18:37508402-37509069 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 439 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 36-648 |
| Cow position: | chr18:52630810-52630157 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 36-660 |
| Cow position: | chr18:38090912-38090247 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 36-662 |
| Cow position: | chr18:22183088-22182421 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 436 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 39-648 |
| Cow position: | chr18:36209913-36209275 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 357 |
| Conread position: | 51-481 |
| Cow position: | chr18:16080975-16081439 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 377 |
| Conread position: | 117-591 |
| Cow position: | chr18:9356354-9355844 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 275 |
| Conread position: | 117-666 |
| Cow position: | chr18:17095338-17095930 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 122-621 |
| Cow position: | chr18:54272957-54273469 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 128-671 |
| Cow position: | chr18:56426900-56426331 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 385 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 130-469 |
| Cow position: | chr18:16151055-16151406 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 138-637 |
| Cow position: | chr18:14046837-14047360 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 142-672 |
| Cow position: | chr18:22681352-22681918 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 155-492 |
| Cow position: | chr18:25993817-25994155 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 228 |
| Conread position: | 156-473 |
| Cow position: | chr18:8883718-8884048 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 156-486 |
| Cow position: | chr18:54026369-54026732 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 256 |
| Conread position: | 156-487 |
| Cow position: | chr18:36253118-36252776 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 233 |
| Conread position: | 156-490 |
| Cow position: | chr18:24452377-24452728 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 156-498 |
| Cow position: | chr18:37336009-37336369 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 294 |
| Conread position: | 156-594 |
| Cow position: | chr18:23702514-23702037 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-606 |
| Cow position: | chr18:44403392-44403869 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 156-639 |
| Cow position: | chr18:16464292-16463779 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-644 |
| Cow position: | chr18:56484109-56483585 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 250 |
| Conread position: | 156-646 |
| Cow position: | chr18:16870852-16871371 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 156-647 |
| Cow position: | chr18:29864037-29863506 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 250 |
| Conread position: | 156-647 |
| Cow position: | chr18:40483575-40484099 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 156-648 |
| Cow position: | chr18:5535563-5536073 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-648 |
| Cow position: | chr18:14418545-14419078 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 349 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr18:16092387-16092920 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr18:23801591-23802124 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 156-648 |
| Cow position: | chr18:26244009-26243480 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr18:29045092-29044611 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 156-648 |
| Cow position: | chr18:29070996-29071522 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr18:47744319-47744853 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 249 |
| Conread position: | 156-648 |
| Cow position: | chr18:51460272-51459741 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-648 |
| Cow position: | chr18:52655383-52655907 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 156-661 |
| Cow position: | chr18:37491379-37491915 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 246 |
| Conread position: | 156-672 |
| Cow position: | chr18:44181411-44180882 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 157-504 |
| Cow position: | chr18:14814808-14815167 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 158-648 |
| Cow position: | chr18:16136080-16135564 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 348 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 159-486 |
| Cow position: | chr18:33087471-33087818 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 223 |
| Conread position: | 173-660 |
| Cow position: | chr18:43030322-43030842 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 177-443 |
| Cow position: | chr18:42242442-42242168 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 177-668 |
| Cow position: | chr18:22411978-22412508 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 184-486 |
| Cow position: | chr18:25957367-25957689 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 184-648 |
| Cow position: | chr18:17943139-17943640 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 185-648 |
| Cow position: | chr18:11869088-11869587 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 191-648 |
| Cow position: | chr18:35295780-35296268 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 194-632 |
| Cow position: | chr18:51846122-51846560 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 196-476 |
| Cow position: | chr18:29239747-29240045 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 25, 208 |
| Conread position: | 198-648 |
| Cow position: | chr18:27539042-27539533 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 199-672 |
| Cow position: | chr18:54168036-54167523 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 208-481 |
| Cow position: | chr18:40159021-40159310 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 231-648 |
| Cow position: | chr18:33271291-33271738 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 240-474 |
| Cow position: | chr18:17091750-17091989 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 253-648 |
| Cow position: | chr18:52573784-52574216 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 255-648 |
| Cow position: | chr18:37583787-37583358 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 259-490 |
| Cow position: | chr18:1145496-1145738 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 276-638 |
| Cow position: | chr18:48528803-48528407 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 350-632 |
| Cow position: | chr18:40721821-40721522 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 367-648 |
| Cow position: | chr18:40343028-40342731 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 382-653 |
| Cow position: | chr18:35056839-35057131 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 525-672 |
| Cow position: | chr18:48529090-48529243 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.