Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 19-648 |
| Cow position: | chr19:15445447-15444757 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 22-648 |
| Cow position: | chr19:16318184-16317503 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 210 |
| Conread position: | 22-648 |
| Cow position: | chr19:20610757-20611440 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 443 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 425 |
| Conread position: | 36-634 |
| Cow position: | chr19:5731949-5732593 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 430 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 36-648 |
| Cow position: | chr19:39183099-39182434 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 36-655 |
| Cow position: | chr19:40834822-40834154 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 189 |
| Conread position: | 40-612 |
| Cow position: | chr19:18359851-18359244 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 394 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 51-648 |
| Cow position: | chr19:7344489-7345140 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 427 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 82-490 |
| Cow position: | chr19:1151177-1151600 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 117-487 |
| Cow position: | chr19:35612297-35611908 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 117-490 |
| Cow position: | chr19:2587733-2588120 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 117-490 |
| Cow position: | chr19:39749758-39750150 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 130-598 |
| Cow position: | chr19:3586592-3586094 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 137-487 |
| Cow position: | chr19:18447489-18447852 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 38, 70 |
| Conread position: | 155-476 |
| Cow position: | chr19:27035090-27034758 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 282 |
| Conread position: | 156-440 |
| Cow position: | chr19:55842361-55842659 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 156-451 |
| Cow position: | chr19:44249483-44249795 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 188 |
| Conread position: | 156-473 |
| Cow position: | chr19:20126598-20126925 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-473 |
| Cow position: | chr19:44396038-44395702 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 18, 300 |
| Conread position: | 156-476 |
| Cow position: | chr19:159282-158941 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 252 |
| Conread position: | 156-492 |
| Cow position: | chr19:33875990-33876345 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 156-493 |
| Cow position: | chr19:266515-266865 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 185 |
| Conread position: | 156-594 |
| Cow position: | chr19:4596852-4597311 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-599 |
| Cow position: | chr19:22390883-22390415 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 156-634 |
| Cow position: | chr19:20107316-20107830 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-644 |
| Cow position: | chr19:40017005-40016484 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 156-648 |
| Cow position: | chr19:474923-474390 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr19:1585042-1585573 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 352 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr19:3176049-3176570 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 187 |
| Conread position: | 156-648 |
| Cow position: | chr19:6554553-6555083 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr19:7481362-7480828 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 156-648 |
| Cow position: | chr19:9705610-9705083 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 156-648 |
| Cow position: | chr19:12553661-12553126 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 251 |
| Conread position: | 156-648 |
| Cow position: | chr19:21338268-21337726 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 362 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 156-648 |
| Cow position: | chr19:30517380-30517909 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr19:52148971-52148443 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 156-657 |
| Cow position: | chr19:33944144-33944683 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 355 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 156-665 |
| Cow position: | chr19:7490673-7491225 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 369 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-671 |
| Cow position: | chr19:32138342-32137791 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 287 |
| Conread position: | 156-671 |
| Cow position: | chr19:38559713-38559155 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 297 |
| Conread position: | 156-672 |
| Cow position: | chr19:29088361-29088884 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 158-648 |
| Cow position: | chr19:175042-175574 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 160-427 |
| Cow position: | chr19:28741302-28741018 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 160-490 |
| Cow position: | chr19:336316-335976 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 285 |
| Conread position: | 161-645 |
| Cow position: | chr19:1292927-1293454 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 169-648 |
| Cow position: | chr19:42581694-42581200 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 170-492 |
| Cow position: | chr19:28642326-28642657 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 173-595 |
| Cow position: | chr19:33905662-33906108 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 176-660 |
| Cow position: | chr19:36418596-36419094 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 177-476 |
| Cow position: | chr19:1354968-1354654 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 177-648 |
| Cow position: | chr19:165526-165023 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 108, 41 |
| Conread position: | 184-490 |
| Cow position: | chr19:3113920-3114230 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 186-487 |
| Cow position: | chr19:4780756-4781051 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 190-492 |
| Cow position: | chr19:24672885-24672565 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 196-498 |
| Cow position: | chr19:5110712-5110398 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 196-598 |
| Cow position: | chr19:6439808-6440249 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 199-492 |
| Cow position: | chr19:39990563-39990260 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 206-537 |
| Cow position: | chr19:8207379-8207029 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 197 |
| Conread position: | 207-648 |
| Cow position: | chr19:2261799-2261330 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 220-476 |
| Cow position: | chr19:39695906-39696176 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 226-672 |
| Cow position: | chr19:45150206-45149738 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 127 |
| Conread position: | 227-504 |
| Cow position: | chr19:23865495-23865212 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 278 |
| Conread position: | 227-648 |
| Cow position: | chr19:55165001-55164551 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 405 |
| Conread position: | 232-648 |
| Cow position: | chr19:19388488-19388940 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 239-487 |
| Cow position: | chr19:26805318-26805059 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 253-475 |
| Cow position: | chr19:39944211-39943987 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 280-492 |
| Cow position: | chr19:28576343-28576122 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 280-672 |
| Cow position: | chr19:4552388-4551991 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 282-646 |
| Cow position: | chr19:47189741-47189350 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 347 |
| Conread position: | 286-634 |
| Cow position: | chr19:22511958-22512337 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 291-490 |
| Cow position: | chr19:34654379-34654179 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 310-648 |
| Cow position: | chr19:30758221-30758571 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 525-672 |
| Cow position: | chr19:36999239-36999088 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 526-672 |
| Cow position: | chr19:40247760-40247912 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.