Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 2-648
Cow position: chr20:6136624-6135920 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 15-648
Cow position: chr20:3677938-3677297 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 425
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 27, 159

Conread position: 22-634
Cow position: chr20:20440563-20439915 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 533

Conread position: 22-648
Cow position: chr20:18355617-18356300 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position: chr20:30385838-30385176 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 433
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 53

Conread position: 22-648
Cow position: chr20:30578278-30578932 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 215

Conread position: 22-660
Cow position: chr20:16560155-16559459 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 32-648
Cow position: chr20:39233628-39234300 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 434
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 21, 0

Conread position: 36-648
Cow position: chr20:7598450-7597788 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 185

Conread position: 36-648
Cow position: chr20:8971481-8970824 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 423
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 10, 48

Conread position: 36-648
Cow position: chr20:12568909-12568247 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 432
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 16, 195

Conread position: 36-648
Cow position: chr20:19844192-19844846 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 429
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position: chr20:24541827-24542495 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 36-648
Cow position: chr20:27875884-27876549 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 432
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 194

Conread position: 36-648
Cow position: chr20:28444945-28444279 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 430
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 16, 52

Conread position: 36-662
Cow position: chr20:21718967-21719645 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 199

Conread position: 36-662
Cow position: chr20:34459902-34459225 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 221

Conread position: 39-492
Cow position: chr20:30461644-30461170 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 70

Conread position: 39-632
Cow position: chr20:37582491-37583111 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 414
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 7, 58

Conread position: 49-648
Cow position: chr20:22696607-22695986 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 12

Conread position: 49-671
Cow position: chr20:23899804-23900457 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 181

Conread position: 51-672
Cow position: chr20:20185175-20185836 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 435
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 31, 15

Conread position: 117-490
Cow position: chr20:31079880-31080264 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 254
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 105

Conread position: 117-672
Cow position: chr20:10495483-10496081 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 392
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 41, 13

Conread position: 119-646
Cow position: chr20:29053834-29054390 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 404

Conread position: 154-647
Cow position: chr20:870470-869948 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 354
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 43

Conread position: 155-648
Cow position: chr20:35160044-35159513 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 352
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 250

Conread position: 155-671
Cow position: chr20:7811293-7810744 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 360
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 23, 79

Conread position: 156-476
Cow position: chr20:33182148-33181812 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 22, 61

Conread position: 156-480
Cow position: chr20:5537465-5537806 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 299

Conread position: 156-481
Cow position: chr20:19440452-19440796 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 22, 13

Conread position: 156-489
Cow position: chr20:19244011-19244351 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 111, 54

Conread position: 156-490
Cow position: chr20:2653679-2654019 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 28, 44

Conread position: 156-490
Cow position: chr20:5793413-5793766 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 305

Conread position: 156-490
Cow position: chr20:35019458-35019808 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 29, 152

Conread position: 156-499
Cow position: chr20:4736782-4736429 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 78

Conread position: 156-622
Cow position: chr20:5936456-5935964 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 331
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 28, 12

Conread position: 156-645
Cow position: chr20:14757719-14757190 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 346
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr20:2180215-2179698 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 344
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 420

Conread position: 156-648
Cow position: chr20:3809233-3808704 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 353
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 484

Conread position: 156-648
Cow position: chr20:6476067-6476589 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 348
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr20:13788669-13789177 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 354
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 56, 72

Conread position: 156-648
Cow position: chr20:24568733-24568200 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr20:25846084-25845554 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr20:30430808-30431341 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 356
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 65

Conread position: 156-648
Cow position: chr20:38956674-38957207 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 356
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 249

Conread position: 156-655
Cow position: chr20:12332230-12332752 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 337
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 79

Conread position: 156-660
Cow position: chr20:37956281-37955774 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 137

Conread position: 157-645
Cow position: chr20:35144342-35143838 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 344
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 60

Conread position: 158-486
Cow position: chr20:13765436-13765780 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 35

Conread position: 161-648
Cow position: chr20:13654748-13654259 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 108

Conread position: 165-518
Cow position: chr20:1535013-1534631 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 41, 243

Conread position: 165-648
Cow position: chr20:35108642-35108118 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 347
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 13, 0

Conread position: 167-492
Cow position: chr20:28724302-28724648 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 39, 241

Conread position: 168-441
Cow position: chr20:11411483-11411195 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 49

Conread position: 168-645
Cow position: chr20:825328-825846 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 340
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 169-646
Cow position: chr20:36419165-36418650 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 335
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 13

Conread position: 172-461
Cow position: chr20:28101876-28102178 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 35, 211

Conread position: 176-585
Cow position: chr20:4772256-4772695 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 99

Conread position: 177-648
Cow position: chr20:13507000-13506489 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 339
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 29, 43

Conread position: 184-648
Cow position: chr20:14926077-14925573 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 37, 0

Conread position: 193-648
Cow position: chr20:42085107-42085602 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 329
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 0

Conread position: 196-648
Cow position: chr20:28561307-28560815 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 328
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 10, 20

Conread position: 198-491
Cow position: chr20:34361818-34362111 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 21

Conread position: 204-490
Cow position: chr20:13576129-13575827 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 193

Conread position: 227-504
Cow position: chr20:13062463-13062742 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 119

Conread position: 227-664
Cow position: chr20:32125975-32125510 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 310
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 165

Conread position: 265-648
Cow position: chr20:28035198-28034787 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 277
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 15

Conread position: 281-648
Cow position: chr20:22061506-22061108 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 265
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 289-645
Cow position: chr20:22186451-22186067 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 378

Conread position: 524-660
Cow position: chr20:13062797-13062932 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 110

Conread position: 525-672
Cow position: chr20:1534585-1534439 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 74, 118

Show alignments to all cow chromosomes.