Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 8-490
Cow position: chr21:34656449-34656956 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 328
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 42, 321

Conread position: 15-214
Cow position: chr21:20771700-20771909 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 118

Conread position: 22-442
Cow position: chr21:39225557-39225107 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 302
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 159

Conread position: 22-477
Cow position: chr21:7063171-7062681 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 324
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 448

Conread position: 22-481
Cow position: chr21:4481795-4482290 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 328
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position: chr21:6966961-6966293 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 44

Conread position: 36-486
Cow position: chr21:17143190-17143677 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 326
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 16, 196

Conread position: 36-491
Cow position: chr21:29909798-29909318 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 329
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 10, 180

Conread position: 36-610
Cow position: chr21:44531711-44532325 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 215

Conread position: 36-634
Cow position: chr21:37373740-37374380 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position: chr21:2513365-2514029 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 116

Conread position: 36-648
Cow position: chr21:36375502-36376169 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 36-648
Cow position: chr21:41797209-41796542 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 428
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 14, 624

Conread position: 39-648
Cow position: chr21:36978386-36977732 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 426
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 7, 188

Conread position: 49-666
Cow position: chr21:35390601-35389950 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 430
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 83, 40

Conread position: 52-487
Cow position: chr21:5594260-5594725 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 311
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 54

Conread position: 56-352
Cow position: chr21:21132241-21131930 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 181

Conread position: 115-490
Cow position: chr21:8836616-8836999 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 91, 15

Conread position: 115-491
Cow position: chr21:22750846-22750448 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 38

Conread position: 115-614
Cow position: chr21:38946064-38945543 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 14

Conread position: 122-453
Cow position: chr21:33946640-33946987 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 78

Conread position: 128-444
Cow position: chr21:44075896-44076237 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 141

Conread position: 128-491
Cow position: chr21:46290993-46291382 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 29, 0

Conread position: 133-651
Cow position: chr21:28258297-28258855 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 370
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 31

Conread position: 142-492
Cow position: chr21:24647458-24647819 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 8

Conread position: 142-634
Cow position: chr21:47375773-47376285 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 8

Conread position: 142-669
Cow position: chr21:4595985-4595454 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 74

Conread position: 153-481
Cow position: chr21:4880788-4880443 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 64

Conread position: 153-659
Cow position: chr21:5019791-5020336 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 62

Conread position: 155-632
Cow position: chr21:38019878-38020390 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 337
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 74

Conread position: 156-481
Cow position: chr21:33947882-33948213 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 51

Conread position: 156-486
Cow position: chr21:13112744-13112393 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 61

Conread position: 156-486
Cow position: chr21:25189290-25189641 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 61

Conread position: 156-486
Cow position: chr21:26401118-26400767 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 22, 56

Conread position: 156-490
Cow position: chr21:24083700-24083355 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 13

Conread position: 156-490
Cow position: chr21:32397402-32397048 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 242
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 156-490
Cow position: chr21:34255944-34255589 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 68

Conread position: 156-618
Cow position: chr21:27031894-27032369 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 309
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 28, 9

Conread position: 156-647
Cow position: chr21:33358559-33358078 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 326
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 50, 58

Conread position: 156-648
Cow position: chr21:1195186-1195718 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 356
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 250

Conread position: 156-648
Cow position: chr21:33256203-33256735 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 358
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr21:42916442-42916973 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 349
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 65, 24

Conread position: 156-648
Cow position: chr21:44763313-44762782 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr21:47976656-47977189 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-657
Cow position: chr21:10852914-10853453 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 356
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 61

Conread position: 156-659
Cow position: chr21:31251643-31252189 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 362
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 9

Conread position: 157-470
Cow position: chr21:25779892-25779568 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 244

Conread position: 157-588
Cow position: chr21:33662947-33663403 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 303
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 50

Conread position: 158-476
Cow position: chr21:3805577-3805906 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 54

Conread position: 158-595
Cow position: chr21:995778-995322 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 305
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 59

Conread position: 158-645
Cow position: chr21:24948757-24949291 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 355
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 59

Conread position: 160-476
Cow position: chr21:47943604-47943937 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 74

Conread position: 160-648
Cow position: chr21:4078700-4079222 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 170-475
Cow position: chr21:25394338-25394019 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 156

Conread position: 171-487
Cow position: chr21:166514-166853 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 7, 333

Conread position: 176-487
Cow position: chr21:49648305-49647973 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 13

Conread position: 176-672
Cow position: chr21:3116209-3116705 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 340
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 30, 159

Conread position: 177-455
Cow position: chr21:41893-42182 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 33

Conread position: 189-645
Cow position: chr21:3922944-3923441 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 332
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 484

Conread position: 197-467
Cow position: chr21:4284891-4284610 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 19

Conread position: 221-492
Cow position: chr21:30555369-30555094 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 126, 10

Conread position: 241-648
Cow position: chr21:404846-404422 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 269
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 41

Conread position: 253-648
Cow position: chr21:28916222-28915791 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 286
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 0

Conread position: 255-490
Cow position: chr21:4586947-4586701 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 55

Conread position: 276-578
Cow position: chr21:34551101-34550788 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 68, 18

Conread position: 307-490
Cow position: chr21:15548097-15547909 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 85

Conread position: 326-483
Cow position: chr21:20772298-20772463 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 433-647
Cow position: chr21:31642142-31642369 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 66

Conread position: 523-672
Cow position: chr21:20772901-20773049 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 132
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.