Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 1-648
Cow position: chr22:30676418-30675721 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 36

Conread position: 8-586
Cow position: chr22:41921424-41922027 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 391
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 124, 12

Conread position: 12-481
Cow position: chr22:21193879-21193384 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 331
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 61, 34

Conread position: 19-648
Cow position: chr22:5931761-5931077 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 43

Conread position: 22-481
Cow position: chr22:11802723-11802231 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 326
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 408

Conread position: 22-636
Cow position: chr22:17326155-17325488 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 435
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 30, 210

Conread position: 22-648
Cow position: chr22:10578161-10577482 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 438
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 7, 228

Conread position: 22-648
Cow position: chr22:11608969-11609651 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 211

Conread position: 22-648
Cow position: chr22:27307638-27306958 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 22-662
Cow position: chr22:20238506-20237808 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 36-648
Cow position: chr22:539475-540141 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 433
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 14, 193

Conread position: 36-648
Cow position: chr22:696268-696937 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 384

Conread position: 36-648
Cow position: chr22:3276008-3275351 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 53

Conread position: 36-648
Cow position: chr22:10907857-10907199 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 273

Conread position: 36-648
Cow position: chr22:17994970-17994307 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 426
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 10, 160

Conread position: 36-648
Cow position: chr22:31332533-31331866 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position: chr22:44100998-44100333 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 37-476
Cow position: chr22:8118900-8118434 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 304
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 428

Conread position: 40-648
Cow position: chr22:980635-981297 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 378

Conread position: 41-648
Cow position: chr22:3434619-3433957 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 191

Conread position: 49-631
Cow position: chr22:36356427-36357053 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 179

Conread position: 51-432
Cow position: chr22:37537115-37536709 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 275
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 14

Conread position: 52-648
Cow position: chr22:18604439-18603805 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 111-648
Cow position: chr22:4943548-4944121 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 114-385
Cow position: chr22:43303830-43303566 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 29

Conread position: 115-664
Cow position: chr22:41963290-41962728 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 107

Conread position: 117-647
Cow position: chr22:3271656-3271104 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 356
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 82, 58

Conread position: 134-672
Cow position: chr22:8647329-8646736 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 397
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 63

Conread position: 142-475
Cow position: chr22:283514-283173 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 65

Conread position: 144-648
Cow position: chr22:6634524-6635053 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 365
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 40, 7

Conread position: 148-612
Cow position: chr22:6514832-6514327 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 10, 69

Conread position: 155-621
Cow position: chr22:35904691-35904222 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 297
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 50

Conread position: 155-648
Cow position: chr22:41169374-41169902 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 21

Conread position: 156-403
Cow position: chr22:11635944-11635682 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 72

Conread position: 156-476
Cow position: chr22:8735243-8734901 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 61

Conread position: 156-476
Cow position: chr22:39039499-39039167 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 216
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 28, 78

Conread position: 156-481
Cow position: chr22:15355170-15355511 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 65, 27

Conread position: 156-486
Cow position: chr22:45014567-45014217 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 231
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 156-490
Cow position: chr22:16693102-16693450 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 72

Conread position: 156-491
Cow position: chr22:11089181-11089533 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 226
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 76

Conread position: 156-596
Cow position: chr22:34170817-34171295 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 22, 61

Conread position: 156-610
Cow position: chr22:10784207-10784682 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 77

Conread position: 156-616
Cow position: chr22:23941726-23941251 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 308
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 20

Conread position: 156-618
Cow position: chr22:18196751-18197254 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 334
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 0

Conread position: 156-645
Cow position: chr22:10601346-10601867 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-647
Cow position: chr22:40608895-40609406 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 227

Conread position: 156-648
Cow position: chr22:1518553-1518034 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr22:13774980-13775512 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 355
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr22:15309482-15308957 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 357
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 61

Conread position: 156-648
Cow position: chr22:17894067-17893545 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 346
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 43

Conread position: 156-648
Cow position: chr22:28784594-28785126 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr22:29854330-29854857 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 300

Conread position: 156-648
Cow position: chr22:31315017-31315550 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 362
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr22:42993651-42994179 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 353
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 56

Conread position: 156-648
Cow position: chr22:45280422-45280955 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 356
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 65

Conread position: 156-656
Cow position: chr22:12729175-12728647 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 239

Conread position: 156-662
Cow position: chr22:8487400-8486849 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 366
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 156-662
Cow position: chr22:13208874-13209406 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 354
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 22, 46

Conread position: 156-663
Cow position: chr22:2391064-2390513 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 368
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 22, 61

Conread position: 156-672
Cow position: chr22:1026495-1027038 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 363
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 61

Conread position: 157-648
Cow position: chr22:41847074-41846565 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 60

Conread position: 157-672
Cow position: chr22:8266945-8267494 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 372
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 101

Conread position: 158-487
Cow position: chr22:7279019-7279370 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 239
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 252

Conread position: 158-648
Cow position: chr22:19601323-19600795 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 355
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 59

Conread position: 165-476
Cow position: chr22:19019078-19018748 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 52

Conread position: 168-475
Cow position: chr22:22884937-22885253 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 204
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 33

Conread position: 169-648
Cow position: chr22:33799527-33799012 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 337
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 45

Conread position: 170-461
Cow position: chr22:9047114-9047414 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 102

Conread position: 174-648
Cow position: chr22:22934266-22934781 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 176-475
Cow position: chr22:39453084-39453403 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 87

Conread position: 176-648
Cow position: chr22:14823155-14822651 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 334
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 16

Conread position: 176-672
Cow position: chr22:22410928-22411455 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 44

Conread position: 177-476
Cow position: chr22:30172836-30173142 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 212
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 98, 29

Conread position: 178-644
Cow position: chr22:22029723-22030224 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 339
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 20

Conread position: 184-598
Cow position: chr22:46612479-46612043 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 296
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 22

Conread position: 184-648
Cow position: chr22:32337825-32338329 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 37, 0

Conread position: 188-648
Cow position: chr22:6499182-6498687 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 330
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 30

Conread position: 189-648
Cow position: chr22:10549239-10549738 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 332
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 490

Conread position: 189-671
Cow position: chr22:10722582-10722082 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 328
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 142

Conread position: 193-486
Cow position: chr22:40384418-40384722 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 17

Conread position: 204-659
Cow position: chr22:36859012-36858519 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 9

Conread position: 227-472
Cow position: chr22:34655786-34655544 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 102

Conread position: 228-478
Cow position: chr22:5625211-5624951 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 155

Conread position: 232-602
Cow position: chr22:38954714-38954356 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 51

Conread position: 233-648
Cow position: chr22:44381903-44381452 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 306
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 240-672
Cow position: chr22:7230497-7230962 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 302
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 253-621
Cow position: chr22:37291264-37290863 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 146

Conread position: 255-486
Cow position: chr22:29396682-29396928 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 146

Conread position: 262-635
Cow position: chr22:15494999-15495399 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 158

Conread position: 276-648
Cow position: chr22:94206-93815 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 88

Conread position: 276-672
Cow position: chr22:18561619-18561203 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 43, 28

Conread position: 280-490
Cow position: chr22:8595402-8595182 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 291-672
Cow position: chr22:13546067-13545680 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 272
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 9

Conread position: 321-499
Cow position: chr22:11970819-11970632 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 360-660
Cow position: chr22:14156252-14155940 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 87

Conread position: 384-672
Cow position: chr22:26243113-26243416 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 213

Conread position: 524-671
Cow position: chr22:25201028-25201181 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.