Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 10-445 |
| Cow position: | chr23:30212529-30212070 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 22-429 |
| Cow position: | chr23:15568604-15568161 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 212 |
| Conread position: | 22-481 |
| Cow position: | chr23:36097139-36097634 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr23:4080461-4081144 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr23:25350676-25351359 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-662 |
| Cow position: | chr23:943297-943998 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 26-648 |
| Cow position: | chr23:19316810-19317487 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 36-476 |
| Cow position: | chr23:1327044-1326595 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 36-481 |
| Cow position: | chr23:22144966-22144501 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 195 |
| Conread position: | 36-635 |
| Cow position: | chr23:14264682-14265336 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 429 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 191 |
| Conread position: | 36-648 |
| Cow position: | chr23:8705199-8705863 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 433 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 200 |
| Conread position: | 36-648 |
| Cow position: | chr23:16612455-16611810 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 423 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 36-648 |
| Cow position: | chr23:19491892-19492557 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 441 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 36-648 |
| Cow position: | chr23:20153882-20153222 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 191 |
| Conread position: | 51-648 |
| Cow position: | chr23:21773562-21772910 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 427 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 578 |
| Conread position: | 114-644 |
| Cow position: | chr23:15659128-15658566 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 369 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 128-598 |
| Cow position: | chr23:15039862-15039360 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 130-478 |
| Cow position: | chr23:644275-643929 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 144-444 |
| Cow position: | chr23:30166882-30166589 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 146-648 |
| Cow position: | chr23:2760358-2760898 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 153-486 |
| Cow position: | chr23:2024618-2024266 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 153-490 |
| Cow position: | chr23:27146801-27146473 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 155-476 |
| Cow position: | chr23:22169356-22169696 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 156-443 |
| Cow position: | chr23:4308707-4308402 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-467 |
| Cow position: | chr23:15179537-15179864 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-470 |
| Cow position: | chr23:40372759-40372427 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 156-481 |
| Cow position: | chr23:19621372-19621029 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 156-486 |
| Cow position: | chr23:14960481-14960131 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-490 |
| Cow position: | chr23:23283966-23284318 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 156-492 |
| Cow position: | chr23:15350695-15351043 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 156-648 |
| Cow position: | chr23:609201-609728 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-648 |
| Cow position: | chr23:3285229-3285758 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 348 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 294 |
| Conread position: | 156-648 |
| Cow position: | chr23:3417859-3417329 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 352 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 74, 182 |
| Conread position: | 156-648 |
| Cow position: | chr23:3708871-3709404 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr23:4891162-4891695 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 360 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 156-648 |
| Cow position: | chr23:11781263-11781783 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-648 |
| Cow position: | chr23:24119027-24119554 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 156-648 |
| Cow position: | chr23:28221176-28221701 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 158 |
| Conread position: | 156-648 |
| Cow position: | chr23:36028911-36028379 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-659 |
| Cow position: | chr23:16496799-16496260 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 352 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 156-662 |
| Cow position: | chr23:21009138-21008587 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 157-648 |
| Cow position: | chr23:2792294-2791765 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 356 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 158-648 |
| Cow position: | chr23:2321471-2320944 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 352 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 159-648 |
| Cow position: | chr23:616774-616266 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 159-648 |
| Cow position: | chr23:1249058-1248528 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 160-648 |
| Cow position: | chr23:5872090-5871564 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 353 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 164-481 |
| Cow position: | chr23:39744366-39744703 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 169-476 |
| Cow position: | chr23:28116577-28116270 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 169-482 |
| Cow position: | chr23:28361576-28361892 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 172-475 |
| Cow position: | chr23:27977043-27976740 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 173-492 |
| Cow position: | chr23:10422371-10422043 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 174-648 |
| Cow position: | chr23:2368308-2368823 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 239 |
| Conread position: | 177-476 |
| Cow position: | chr23:34256465-34256148 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 189-467 |
| Cow position: | chr23:9560932-9560640 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 189-476 |
| Cow position: | chr23:11027911-11028212 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 189-671 |
| Cow position: | chr23:26307547-26308063 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 195-476 |
| Cow position: | chr23:28030418-28030132 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 200-461 |
| Cow position: | chr23:39246190-39246462 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 220-648 |
| Cow position: | chr23:4266083-4265616 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 227-588 |
| Cow position: | chr23:7288956-7288584 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 48, 283 |
| Conread position: | 227-672 |
| Cow position: | chr23:38721122-38721580 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 235-486 |
| Cow position: | chr23:11343052-11343314 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 242-427 |
| Cow position: | chr23:25582659-25582858 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 244-672 |
| Cow position: | chr23:7370427-7370876 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 250-476 |
| Cow position: | chr23:10937756-10937516 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 253-648 |
| Cow position: | chr23:27401710-27402135 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 269-492 |
| Cow position: | chr23:1114681-1114906 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 276-492 |
| Cow position: | chr23:7492739-7492526 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 280-648 |
| Cow position: | chr23:2720056-2720455 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 289-648 |
| Cow position: | chr23:1958742-1959129 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 291-466 |
| Cow position: | chr23:10554989-10554806 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 297-647 |
| Cow position: | chr23:40888062-40888438 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 400-660 |
| Cow position: | chr23:25593758-25594035 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 524-647 |
| Cow position: | chr23:9542980-9542856 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 524-659 |
| Cow position: | chr23:11078162-11078298 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.