Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 1-598 |
| Cow position: | chr24:35868254-35867631 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 22-481 |
| Cow position: | chr24:14195448-14194957 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 211 |
| Conread position: | 22-598 |
| Cow position: | chr24:21248537-21247905 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 414 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 211 |
| Conread position: | 22-648 |
| Cow position: | chr24:208591-207912 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 215 |
| Conread position: | 22-648 |
| Cow position: | chr24:6326955-6326279 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 210 |
| Conread position: | 22-648 |
| Cow position: | chr24:12698607-12697924 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 399 |
| Conread position: | 36-634 |
| Cow position: | chr24:6963274-6963928 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 36-636 |
| Cow position: | chr24:12911015-12911647 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 415 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 36-637 |
| Cow position: | chr24:19184589-19185237 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 416 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 8, 495 |
| Conread position: | 36-645 |
| Cow position: | chr24:16082062-16081398 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 632 |
| Conread position: | 36-648 |
| Cow position: | chr24:13190597-13191260 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 412 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 319 |
| Conread position: | 36-648 |
| Cow position: | chr24:13234665-13235324 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-648 |
| Cow position: | chr24:20366791-20367459 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-662 |
| Cow position: | chr24:6440178-6440863 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 448 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 383 |
| Conread position: | 39-486 |
| Cow position: | chr24:12333293-12332797 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 40-648 |
| Cow position: | chr24:12570350-12571003 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 424 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 49-498 |
| Cow position: | chr24:41535676-41535214 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 114-672 |
| Cow position: | chr24:6463484-6464085 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 394 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 115-641 |
| Cow position: | chr24:9177448-9176903 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 117-480 |
| Cow position: | chr24:17997821-17998185 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 130-487 |
| Cow position: | chr24:32848693-32849064 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 174 |
| Conread position: | 130-666 |
| Cow position: | chr24:40460861-40460291 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 133-476 |
| Cow position: | chr24:15934431-15934799 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 142-653 |
| Cow position: | chr24:23093494-23092951 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 365 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 142-653 |
| Cow position: | chr24:23096232-23095689 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 365 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 150-486 |
| Cow position: | chr24:13323398-13323755 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 250 |
| Conread position: | 153-443 |
| Cow position: | chr24:12466796-12467104 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 155-486 |
| Cow position: | chr24:16604219-16603872 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 250 |
| Conread position: | 155-647 |
| Cow position: | chr24:36712810-36713324 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 155-648 |
| Cow position: | chr24:29189846-29190381 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 365 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 156-449 |
| Cow position: | chr24:14740213-14740516 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 156-452 |
| Cow position: | chr24:19642480-19642782 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 156-467 |
| Cow position: | chr24:17310979-17310657 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 156-476 |
| Cow position: | chr24:40467856-40467518 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 156-478 |
| Cow position: | chr24:15295386-15295726 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 242 |
| Conread position: | 156-481 |
| Cow position: | chr24:43906013-43906358 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-490 |
| Cow position: | chr24:30895385-30895732 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-490 |
| Cow position: | chr24:37077292-37076970 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 156-589 |
| Cow position: | chr24:12088761-12089231 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-619 |
| Cow position: | chr24:34373151-34373655 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 332 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-633 |
| Cow position: | chr24:16907899-16908381 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 156-638 |
| Cow position: | chr24:31380980-31381483 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 156-648 |
| Cow position: | chr24:146037-145511 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 352 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 22, 204 |
| Conread position: | 156-648 |
| Cow position: | chr24:6021518-6020986 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 353 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 156-648 |
| Cow position: | chr24:7064124-7064658 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr24:8606888-8607421 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr24:12578093-12578613 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 156-648 |
| Cow position: | chr24:13085905-13085387 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 156-648 |
| Cow position: | chr24:16647344-16646816 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 346 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 156-648 |
| Cow position: | chr24:19689020-19688487 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 156-648 |
| Cow position: | chr24:19884854-19885383 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 156-648 |
| Cow position: | chr24:39680084-39680600 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 156-648 |
| Cow position: | chr24:40551184-40551717 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr24:41005044-41005571 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 157-504 |
| Cow position: | chr24:5775556-5775209 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 158-492 |
| Cow position: | chr24:42587569-42587911 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 158-632 |
| Cow position: | chr24:9089510-9089009 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 158-648 |
| Cow position: | chr24:6412042-6412570 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 356 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 160-473 |
| Cow position: | chr24:14377092-14376758 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 160-476 |
| Cow position: | chr24:12239427-12239756 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 160-487 |
| Cow position: | chr24:18267923-18267583 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 241 |
| Conread position: | 160-622 |
| Cow position: | chr24:23821250-23820773 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 163-648 |
| Cow position: | chr24:3162037-3162562 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 169-631 |
| Cow position: | chr24:6414440-6414920 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 175-492 |
| Cow position: | chr24:39056115-39055792 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 176-490 |
| Cow position: | chr24:15707219-15706885 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 176-648 |
| Cow position: | chr24:6667183-6666689 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 342 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 189-612 |
| Cow position: | chr24:20122432-20121986 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 159 |
| Conread position: | 191-646 |
| Cow position: | chr24:19467986-19467500 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 194-490 |
| Cow position: | chr24:24249891-24249588 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 207-648 |
| Cow position: | chr24:25648446-25647975 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 210-598 |
| Cow position: | chr24:25576465-25576065 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 214-589 |
| Cow position: | chr24:27762199-27762600 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 219-553 |
| Cow position: | chr24:33574838-33575182 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 219-621 |
| Cow position: | chr24:17297615-17297225 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 250-672 |
| Cow position: | chr24:17031307-17030875 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 253-647 |
| Cow position: | chr24:6534600-6534208 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 212 |
| Conread position: | 275-648 |
| Cow position: | chr24:35824511-35824109 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 278-648 |
| Cow position: | chr24:3850286-3850687 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 288-648 |
| Cow position: | chr24:9072136-9071749 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 389-660 |
| Cow position: | chr24:29074670-29074391 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 75 |
| Conread position: | 522-648 |
| Cow position: | chr24:37886065-37886192 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 524-672 |
| Cow position: | chr24:25465771-25465616 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 532-648 |
| Cow position: | chr24:6052060-6052177 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.