Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 1-666 |
| Cow position: | chr25:30809912-30810613 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 8-648 |
| Cow position: | chr25:20773233-20772537 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 444 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 22-481 |
| Cow position: | chr25:14537554-14537059 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr25:35552798-35553473 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 449 |
| Conread position: | 36-481 |
| Cow position: | chr25:18191262-18190774 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 130 |
| Conread position: | 36-486 |
| Cow position: | chr25:13959199-13959678 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 36-648 |
| Cow position: | chr25:19338192-19337532 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 190 |
| Conread position: | 36-648 |
| Cow position: | chr25:28862001-28862660 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 56-648 |
| Cow position: | chr25:18422877-18423501 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 57-648 |
| Cow position: | chr25:23774053-23773455 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 114-492 |
| Cow position: | chr25:31513210-31513603 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 115-672 |
| Cow position: | chr25:21146508-21147070 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 117-434 |
| Cow position: | chr25:14626230-14625898 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 133-477 |
| Cow position: | chr25:27534453-27534108 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 150, 27 |
| Conread position: | 133-498 |
| Cow position: | chr25:28261459-28261828 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 144-647 |
| Cow position: | chr25:26538444-26538917 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 146-647 |
| Cow position: | chr25:33261709-33262231 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 241 |
| Conread position: | 153-648 |
| Cow position: | chr25:24215003-24214504 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 153-648 |
| Cow position: | chr25:30020665-30020166 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 155-659 |
| Cow position: | chr25:34494891-34494351 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 230 |
| Conread position: | 156-339 |
| Cow position: | chr25:9984362-9984550 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 156-472 |
| Cow position: | chr25:26355418-26355750 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-477 |
| Cow position: | chr25:14962676-14962346 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 156-481 |
| Cow position: | chr25:11930282-11929941 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 156-492 |
| Cow position: | chr25:18887211-18886856 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 250 |
| Conread position: | 156-647 |
| Cow position: | chr25:35755986-35755455 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 156-648 |
| Cow position: | chr25:11042878-11043411 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 498 |
| Conread position: | 156-648 |
| Cow position: | chr25:17586761-17586230 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr25:22150334-22150865 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 156-672 |
| Cow position: | chr25:24449973-24449421 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 158-661 |
| Cow position: | chr25:20099906-20100418 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 160-660 |
| Cow position: | chr25:11664934-11665473 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 169-476 |
| Cow position: | chr25:10135972-10136290 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 172-647 |
| Cow position: | chr25:12939931-12939419 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 71, 230 |
| Conread position: | 177-481 |
| Cow position: | chr25:34675581-34675899 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 177-490 |
| Cow position: | chr25:34667452-34667124 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 178-646 |
| Cow position: | chr25:9394705-9395202 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 183-470 |
| Cow position: | chr25:23360476-23360773 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 213 |
| Conread position: | 183-663 |
| Cow position: | chr25:9076667-9077166 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 196-476 |
| Cow position: | chr25:22519441-22519735 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 242-645 |
| Cow position: | chr25:18179378-18179807 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 255-481 |
| Cow position: | chr25:35571452-35571211 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 263-648 |
| Cow position: | chr25:27019869-27019449 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 137 |
| Conread position: | 286-662 |
| Cow position: | chr25:29526465-29526054 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 33, 117 |
| Conread position: | 290-476 |
| Cow position: | chr25:13785542-13785737 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 350-595 |
| Cow position: | chr25:9646276-9646534 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 350-648 |
| Cow position: | chr25:39555154-39554836 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 350-671 |
| Cow position: | chr25:392742-393086 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 366-648 |
| Cow position: | chr25:14011325-14011623 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 419-648 |
| Cow position: | chr25:10634439-10634215 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 53 |
| Conread position: | 537-657 |
| Cow position: | chr25:24670890-24670771 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 62, 79 |
Show alignments to all cow chromosomes.