Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 19-648 |
| Cow position: | chr26:2349811-2349126 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 196 |
| Conread position: | 22-481 |
| Cow position: | chr26:2418033-2417538 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-644 |
| Cow position: | chr26:3028264-3027576 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 443 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 22-648 |
| Cow position: | chr26:8872207-8872889 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 149 |
| Conread position: | 22-648 |
| Cow position: | chr26:18856488-18857165 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 22-648 |
| Cow position: | chr26:35122880-35122196 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 215 |
| Conread position: | 36-481 |
| Cow position: | chr26:35561585-35562068 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 36-485 |
| Cow position: | chr26:23888793-23889272 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 171 |
| Conread position: | 36-486 |
| Cow position: | chr26:6425376-6425862 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 36-492 |
| Cow position: | chr26:10459436-10459923 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 36-648 |
| Cow position: | chr26:6845136-6844467 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 197 |
| Conread position: | 36-662 |
| Cow position: | chr26:8884230-8884907 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 443 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 200 |
| Conread position: | 40-648 |
| Cow position: | chr26:28707678-28707013 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 51-662 |
| Cow position: | chr26:2200932-2201593 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-481 |
| Cow position: | chr26:4440816-4441279 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 52-648 |
| Cow position: | chr26:4122062-4122713 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 424 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 121-643 |
| Cow position: | chr26:26306783-26306253 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 122-450 |
| Cow position: | chr26:27252071-27252393 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 122-475 |
| Cow position: | chr26:4776867-4777242 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 128-648 |
| Cow position: | chr26:25341416-25340877 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 130-490 |
| Cow position: | chr26:9483570-9483932 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 137-475 |
| Cow position: | chr26:20554723-20554379 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 156-476 |
| Cow position: | chr26:14365715-14365379 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 156-487 |
| Cow position: | chr26:4601676-4601330 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 246 |
| Conread position: | 156-490 |
| Cow position: | chr26:2222984-2222635 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 156-621 |
| Cow position: | chr26:19348978-19348477 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 156-643 |
| Cow position: | chr26:9114549-9115077 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 156-646 |
| Cow position: | chr26:12667980-12668496 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 156-648 |
| Cow position: | chr26:12586024-12585493 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 282 |
| Conread position: | 156-648 |
| Cow position: | chr26:13807506-13806981 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 156-648 |
| Cow position: | chr26:30785287-30785820 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-662 |
| Cow position: | chr26:21011655-21012192 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 158-624 |
| Cow position: | chr26:19012454-19012935 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 158-648 |
| Cow position: | chr26:8654798-8654284 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 159-481 |
| Cow position: | chr26:9841888-9841549 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 165-492 |
| Cow position: | chr26:8878089-8877763 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 177-648 |
| Cow position: | chr26:34264503-34265009 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 183-475 |
| Cow position: | chr26:3705189-3705495 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 185-647 |
| Cow position: | chr26:1087734-1088229 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 191-448 |
| Cow position: | chr26:8647643-8647906 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 198-648 |
| Cow position: | chr26:14488698-14488209 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 207 |
| Conread position: | 217-476 |
| Cow position: | chr26:2605350-2605081 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 222-442 |
| Cow position: | chr26:25189047-25189280 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 228-476 |
| Cow position: | chr26:3905845-3906103 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 228-476 |
| Cow position: | chr26:15551550-15551307 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 276-665 |
| Cow position: | chr26:32534411-32534800 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 280-648 |
| Cow position: | chr26:4729677-4729278 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 289-490 |
| Cow position: | chr26:27987939-27987729 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 292-643 |
| Cow position: | chr26:1347322-1346955 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 306-634 |
| Cow position: | chr26:18781867-18781508 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 306-648 |
| Cow position: | chr26:18804691-18804318 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 315-585 |
| Cow position: | chr26:12552620-12552330 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 525-671 |
| Cow position: | chr26:22619314-22619465 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 525-672 |
| Cow position: | chr26:26312782-26312929 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 138 |
Show alignments to all cow chromosomes.