Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8020C21.3 |
| Conread position: | 1-498 |
| Cow position: | chr27:13352599-13353126 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 2-490 |
| Cow position: | chr27:24114445-24114949 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 236 |
| Conread position: | 14-490 |
| Cow position: | chr27:17567436-17567922 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 36-461 |
| Cow position: | chr27:3995556-3995105 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 161 |
| Conread position: | 36-486 |
| Cow position: | chr27:4981712-4982190 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 36-492 |
| Cow position: | chr27:28294528-28294040 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 36-648 |
| Cow position: | chr27:16032055-16031397 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 36-648 |
| Cow position: | chr27:18696673-18697341 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 36-648 |
| Cow position: | chr27:21284852-21284231 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 406 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 36-648 |
| Cow position: | chr27:26599274-26599913 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 49-586 |
| Cow position: | chr27:12263075-12262532 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 365 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 51-648 |
| Cow position: | chr27:1520029-1520680 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-470 |
| Cow position: | chr27:27235791-27236148 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 153-621 |
| Cow position: | chr27:3991478-3991978 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 156-470 |
| Cow position: | chr27:29952734-29953062 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 156-476 |
| Cow position: | chr27:23446262-23445937 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 156-476 |
| Cow position: | chr27:25965478-25965150 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 156-476 |
| Cow position: | chr27:26552954-26552633 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 156-476 |
| Cow position: | chr27:26855530-26855869 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-481 |
| Cow position: | chr27:1031309-1031654 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-481 |
| Cow position: | chr27:17404395-17404050 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-486 |
| Cow position: | chr27:19524245-19523894 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 156-486 |
| Cow position: | chr27:20809882-20810232 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-486 |
| Cow position: | chr27:26327529-26327879 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-486 |
| Cow position: | chr27:27665478-27665819 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-487 |
| Cow position: | chr27:8261127-8261472 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 156-488 |
| Cow position: | chr27:8200274-8200627 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 31, 61 |
| Conread position: | 156-490 |
| Cow position: | chr27:29858947-29859293 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 156-610 |
| Cow position: | chr27:1905089-1904611 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 156-634 |
| Cow position: | chr27:23318448-23317946 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-646 |
| Cow position: | chr27:15634865-15634336 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-646 |
| Cow position: | chr27:24296774-24296268 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr27:166445-165920 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 156-648 |
| Cow position: | chr27:5984559-5984030 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 354 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 156-648 |
| Cow position: | chr27:9990744-9990209 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 363 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr27:12147176-12146643 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 156-648 |
| Cow position: | chr27:13900364-13900894 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 359 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 156-648 |
| Cow position: | chr27:22722835-22723354 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 156-657 |
| Cow position: | chr27:15034625-15034085 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 158-621 |
| Cow position: | chr27:31267705-31268199 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 48, 244 |
| Conread position: | 159-435 |
| Cow position: | chr27:28042983-28042688 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 168-636 |
| Cow position: | chr27:22832207-22832706 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 320 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 169-648 |
| Cow position: | chr27:27193871-27193365 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 143 |
| Conread position: | 177-621 |
| Cow position: | chr27:14296715-14297191 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 177-646 |
| Cow position: | chr27:30750865-30750384 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 184-648 |
| Cow position: | chr27:8960533-8960029 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 188-639 |
| Cow position: | chr27:15273571-15273081 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 189-476 |
| Cow position: | chr27:23514940-23515239 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 205-491 |
| Cow position: | chr27:30584639-30584337 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 214-481 |
| Cow position: | chr27:29036844-29036558 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 214-487 |
| Cow position: | chr27:8726107-8726396 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 228-473 |
| Cow position: | chr27:16788902-16788654 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 232-638 |
| Cow position: | chr27:26031520-26031088 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 276-492 |
| Cow position: | chr27:2380184-2380410 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 215 |
| Conread position: | 278-490 |
| Cow position: | chr27:25801607-25801385 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 280-648 |
| Cow position: | chr27:27290996-27291390 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 291-586 |
| Cow position: | chr27:2896948-2897269 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 293-648 |
| Cow position: | chr27:15543629-15544015 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 350-492 |
| Cow position: | chr27:16582785-16582653 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 524-672 |
| Cow position: | chr27:21684449-21684304 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 126, 76 |
Show alignments to all cow chromosomes.