Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 19-648
Cow position:
Alignm length: 667
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 477

Conread position: 22-442
Cow position:
Alignm length: 456
Alignm identity: 300
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position:
Alignm length: 684
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 22-665
Cow position:
Alignm length: 705
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 36-486
Cow position:
Alignm length: 489
Alignm identity: 333
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 16, 196

Conread position: 36-637
Cow position:
Alignm length: 661
Alignm identity: 437
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position:
Alignm length: 668
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 36-648
Cow position:
Alignm length: 666
Alignm identity: 429
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 16, 0

Conread position: 36-648
Cow position:
Alignm length: 664
Alignm identity: 424
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 16, 582

Conread position: 36-648
Cow position:
Alignm length: 658
Alignm identity: 421
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 14, 133

Conread position: 36-648
Cow position:
Alignm length: 668
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 36-648
Cow position:
Alignm length: 655
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 49

Conread position: 36-648
Cow position:
Alignm length: 670
Alignm identity: 428
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 14, 384

Conread position: 36-648
Cow position:
Alignm length: 671
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 385

Conread position: 38-516
Cow position:
Alignm length: 501
Alignm identity: 322
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 8, 44

Conread position: 39-474
Cow position:
Alignm length: 469
Alignm identity: 306
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 130

Conread position: 39-648
Cow position:
Alignm length: 665
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 380

Conread position: 40-645
Cow position:
Alignm length: 664
Alignm identity: 433
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 240

Conread position: 49-648
Cow position:
Alignm length: 660
Alignm identity: 434
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 31, 368

Conread position: 51-327
Cow position:
Alignm length: 300
Alignm identity: 206
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 63

Conread position: 51-648
Cow position:
Alignm length: 645
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 197

Conread position: 99-647
Cow position:
Alignm length: 590
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 114-598
Cow position:
Alignm length: 502
Alignm identity: 324
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 52, 8

Conread position: 117-655
Cow position:
Alignm length: 584
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 12

Conread position: 122-411
Cow position:
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 64

Conread position: 122-476
Cow position:
Alignm length: 375
Alignm identity: 268
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 52, 20

Conread position: 122-634
Cow position:
Alignm length: 554
Alignm identity: 369
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 63, 38

Conread position: 128-648
Cow position:
Alignm length: 558
Alignm identity: 358
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 58

Conread position: 133-490
Cow position:
Alignm length: 378
Alignm identity: 258
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 25, 85

Conread position: 138-450
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 14

Conread position: 153-648
Cow position:
Alignm length: 533
Alignm identity: 347
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 0

Conread position: 155-656
Cow position:
Alignm length: 538
Alignm identity: 351
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 25, 45

Conread position: 156-473
Cow position:
Alignm length: 326
Alignm identity: 220
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 76

Conread position: 156-476
Cow position:
Alignm length: 340
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 114

Conread position: 156-476
Cow position:
Alignm length: 339
Alignm identity: 230
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 22, 303

Conread position: 156-479
Cow position:
Alignm length: 339
Alignm identity: 232
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 61

Conread position: 156-481
Cow position:
Alignm length: 346
Alignm identity: 231
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 156-486
Cow position:
Alignm length: 352
Alignm identity: 242
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 22, 61

Conread position: 156-486
Cow position:
Alignm length: 350
Alignm identity: 237
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 50

Conread position: 156-486
Cow position:
Alignm length: 353
Alignm identity: 239
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 61

Conread position: 156-492
Cow position:
Alignm length: 347
Alignm identity: 228
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 23, 56

Conread position: 156-598
Cow position:
Alignm length: 483
Alignm identity: 320
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 156-631
Cow position:
Alignm length: 517
Alignm identity: 345
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 23, 61

Conread position: 156-633
Cow position:
Alignm length: 515
Alignm identity: 332
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 24, 63

Conread position: 156-646
Cow position:
Alignm length: 522
Alignm identity: 334
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 104

Conread position: 156-647
Cow position:
Alignm length: 518
Alignm identity: 337
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 50, 107

Conread position: 156-648
Cow position:
Alignm length: 536
Alignm identity: 361
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position:
Alignm length: 535
Alignm identity: 358
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position:
Alignm length: 515
Alignm identity: 333
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 66

Conread position: 156-648
Cow position:
Alignm length: 532
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 61

Conread position: 156-648
Cow position:
Alignm length: 533
Alignm identity: 353
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 22, 78

Conread position: 156-648
Cow position:
Alignm length: 532
Alignm identity: 353
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 156-648
Cow position:
Alignm length: 531
Alignm identity: 347
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 22, 63

Conread position: 156-648
Cow position:
Alignm length: 534
Alignm identity: 355
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 22, 63

Conread position: 156-648
Cow position:
Alignm length: 530
Alignm identity: 336
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 28, 183

Conread position: 156-648
Cow position:
Alignm length: 531
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 108

Conread position: 156-648
Cow position:
Alignm length: 533
Alignm identity: 352
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 22, 484

Conread position: 156-648
Cow position:
Alignm length: 537
Alignm identity: 359
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 22, 61

Conread position: 156-656
Cow position:
Alignm length: 541
Alignm identity: 354
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 22, 72

Conread position: 156-658
Cow position:
Alignm length: 544
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 230

Conread position: 157-648
Cow position:
Alignm length: 532
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 168

Conread position: 158-486
Cow position:
Alignm length: 352
Alignm identity: 245
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 56

Conread position: 158-648
Cow position:
Alignm length: 533
Alignm identity: 360
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 20, 59

Conread position: 158-648
Cow position:
Alignm length: 529
Alignm identity: 352
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 59

Conread position: 165-475
Cow position:
Alignm length: 326
Alignm identity: 223
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 6

Conread position: 168-618
Cow position:
Alignm length: 483
Alignm identity: 315
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 10, 44

Conread position: 171-648
Cow position:
Alignm length: 507
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 195

Conread position: 176-490
Cow position:
Alignm length: 327
Alignm identity: 223
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 32, 205

Conread position: 185-476
Cow position:
Alignm length: 315
Alignm identity: 220
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 31

Conread position: 185-490
Cow position:
Alignm length: 321
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 31

Conread position: 189-672
Cow position:
Alignm length: 531
Alignm identity: 344
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 229

Conread position: 190-444
Cow position:
Alignm length: 264
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 91, 13

Conread position: 192-490
Cow position:
Alignm length: 307
Alignm identity: 210
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 158

Conread position: 195-648
Cow position:
Alignm length: 490
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 204-490
Cow position:
Alignm length: 302
Alignm identity: 210
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 19, 9

Conread position: 207-660
Cow position:
Alignm length: 487
Alignm identity: 313
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 23, 214

Conread position: 214-648
Cow position:
Alignm length: 477
Alignm identity: 320
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 7, 166

Conread position: 218-481
Cow position:
Alignm length: 275
Alignm identity: 185
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 38, 7

Conread position: 218-490
Cow position:
Alignm length: 290
Alignm identity: 202
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 16, 279

Conread position: 218-648
Cow position:
Alignm length: 467
Alignm identity: 305
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 106

Conread position: 227-478
Cow position:
Alignm length: 264
Alignm identity: 176
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 8

Conread position: 228-648
Cow position:
Alignm length: 455
Alignm identity: 304
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 100

Conread position: 239-647
Cow position:
Alignm length: 436
Alignm identity: 293
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 39

Conread position: 241-614
Cow position:
Alignm length: 399
Alignm identity: 265
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 104, 25

Conread position: 254-623
Cow position:
Alignm length: 386
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 23

Conread position: 276-599
Cow position:
Alignm length: 339
Alignm identity: 229
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 43, 119

Conread position: 280-486
Cow position:
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 116

Conread position: 280-490
Cow position:
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 107

Conread position: 282-481
Cow position:
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 288-594
Cow position:
Alignm length: 340
Alignm identity: 229
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 108

Conread position: 350-671
Cow position:
Alignm length: 336
Alignm identity: 219
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 17

Conread position: 351-648
Cow position:
Alignm length: 306
Alignm identity: 206
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 28, 189

Conread position: 397-647
Cow position:
Alignm length: 258
Alignm identity: 183
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 185, 109

Conread position: 524-648
Cow position:
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 524-672
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 75, 81

Show alignments to all cow chromosomes.