Cow genome map

Conread name: Ss1.1-Pig3-SRG8020C21.3

Conread position: 13-476
Cow position: chr29:16171781-16171289 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 316
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 16, 156

Conread position: 19-648
Cow position: chr29:10249346-10248666 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 19-648
Cow position: chr29:35299248-35299936 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 217

Conread position: 22-478
Cow position: chr29:13922841-13923333 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 322
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 22-487
Cow position: chr29:5785147-5785649 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 329
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 0

Conread position: 22-608
Cow position: chr29:13899000-13899644 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 420
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 7, 0

Conread position: 22-634
Cow position: chr29:40293670-40294333 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 432
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 7, 215

Conread position: 22-648
Cow position: chr29:2839002-2838319 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 211

Conread position: 22-648
Cow position: chr29:15967219-15966537 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position: chr29:19525951-19525272 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 67

Conread position: 22-648
Cow position: chr29:21226317-21226994 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 213

Conread position: 22-648
Cow position: chr29:21430518-21429843 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 223

Conread position: 22-648
Cow position: chr29:31095252-31094569 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 442
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 0

Conread position: 22-648
Cow position: chr29:42256640-42255961 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 444
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 7, 210

Conread position: 22-662
Cow position: chr29:32557411-32556709 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 131

Conread position: 36-473
Cow position: chr29:530047-529579 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 315
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 16, 194

Conread position: 36-476
Cow position: chr29:13850522-13850062 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 298
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 62

Conread position: 36-481
Cow position: chr29:15624353-15623873 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 320
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 0

Conread position: 36-486
Cow position: chr29:27977471-27976991 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 310
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 159

Conread position: 36-492
Cow position: chr29:4199753-4200232 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 313
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 19, 38

Conread position: 36-612
Cow position: chr29:30404789-30404196 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 73

Conread position: 36-648
Cow position: chr29:608279-607620 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 208

Conread position: 36-648
Cow position: chr29:2464521-2463854 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 437
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position: chr29:13584569-13585233 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 429

Conread position: 36-648
Cow position: chr29:19656253-19656917 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 196

Conread position: 36-648
Cow position: chr29:26162486-26161820 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 439
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 16, 195

Conread position: 36-648
Cow position: chr29:28658020-28657351 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 438
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 243

Conread position: 36-648
Cow position: chr29:31764391-31765057 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 431
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 198

Conread position: 37-476
Cow position: chr29:9973030-9972572 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 302
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 139

Conread position: 51-617
Cow position: chr29:14374287-14373700 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 385
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 51

Conread position: 117-443
Cow position: chr29:33560949-33560608 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 42, 128

Conread position: 127-487
Cow position: chr29:38394428-38394804 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 42, 33

Conread position: 128-672
Cow position: chr29:7331966-7331381 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 383
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 31, 114

Conread position: 130-614
Cow position: chr29:21267116-21267622 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 333
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 31

Conread position: 149-476
Cow position: chr29:43325977-43326323 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 68

Conread position: 153-468
Cow position: chr29:11226753-11226433 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 110

Conread position: 156-476
Cow position: chr29:27260637-27260295 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 254

Conread position: 156-488
Cow position: chr29:14500350-14500701 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 22, 56

Conread position: 156-490
Cow position: chr29:32893235-32893566 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 51, 60

Conread position: 156-492
Cow position: chr29:45975-45621 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 22, 45

Conread position: 156-492
Cow position: chr29:20465780-20466135 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 243
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 24, 15

Conread position: 156-614
Cow position: chr29:35274535-35274048 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 332
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 29, 61

Conread position: 156-618
Cow position: chr29:2692934-2693432 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 338
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 22, 60

Conread position: 156-643
Cow position: chr29:666923-666395 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 22, 144

Conread position: 156-646
Cow position: chr29:13057237-13057759 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 340
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 59

Conread position: 156-648
Cow position: chr29:800178-799671 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 8

Conread position: 156-648
Cow position: chr29:1477936-1478469 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 156-648
Cow position: chr29:2102330-2102864 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr29:5239877-5240411 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 362
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 59

Conread position: 156-648
Cow position: chr29:6263516-6262991 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 243

Conread position: 156-648
Cow position: chr29:6933976-6934508 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr29:7846879-7847406 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 353
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 22, 78

Conread position: 156-648
Cow position: chr29:10644927-10644394 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 359
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 56

Conread position: 156-648
Cow position: chr29:14209064-14208539 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 354
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 30, 119

Conread position: 156-648
Cow position: chr29:16036929-16036400 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 352
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr29:17976991-17977501 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 9

Conread position: 156-648
Cow position: chr29:20253651-20254184 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 355
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 49, 59

Conread position: 156-648
Cow position: chr29:23055816-23055312 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 342
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 50, 60

Conread position: 156-648
Cow position: chr29:23979195-23979728 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-648
Cow position: chr29:40500504-40499978 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 156-657
Cow position: chr29:408774-408237 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 353
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 78

Conread position: 158-648
Cow position: chr29:8624706-8624179 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 359
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 27, 59

Conread position: 158-648
Cow position: chr29:16346692-16347223 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 356
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 27, 248

Conread position: 160-648
Cow position: chr29:34795371-34794846 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 352
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 170

Conread position: 165-672
Cow position: chr29:15931772-15931255 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 7

Conread position: 167-648
Cow position: chr29:32542632-32543154 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 353
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 50

Conread position: 169-648
Cow position: chr29:6535660-6536152 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 341
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 9, 65

Conread position: 169-648
Cow position: chr29:13075907-13076390 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 335
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 8, 47

Conread position: 176-490
Cow position: chr29:13612315-13612015 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 34

Conread position: 176-649
Cow position: chr29:22950367-22949877 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 327
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 30, 40

Conread position: 177-445
Cow position: chr29:32805024-32805305 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 33

Conread position: 177-648
Cow position: chr29:13651650-13652126 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 322
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 106, 29

Conread position: 178-648
Cow position: chr29:2887135-2886651 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 324
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 43, 96

Conread position: 184-648
Cow position: chr29:9330427-9330934 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 28, 231

Conread position: 188-492
Cow position: chr29:3563790-3564103 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 56

Conread position: 190-490
Cow position: chr29:18023107-18023423 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 218
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 20

Conread position: 192-648
Cow position: chr29:44471206-44471683 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 319
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 16, 71

Conread position: 193-610
Cow position: chr29:32585207-32585645 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 286
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 23

Conread position: 218-476
Cow position: chr29:23755278-23755009 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 184

Conread position: 222-648
Cow position: chr29:7749111-7748685 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 281
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 63, 247

Conread position: 235-668
Cow position: chr29:22284632-22285094 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 317
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 186

Conread position: 239-646
Cow position: chr29:3711604-3712032 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 294
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 42, 109

Conread position: 239-648
Cow position: chr29:5426857-5426409 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 297
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 18, 219

Conread position: 243-476
Cow position: chr29:9963033-9963274 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 16

Conread position: 249-646
Cow position: chr29:579304-578880 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 16, 222

Conread position: 249-648
Cow position: chr29:31183961-31184393 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 292
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 25

Conread position: 253-637
Cow position: chr29:17152849-17153254 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 262
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 23

Conread position: 254-492
Cow position: chr29:44599948-44599708 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 94, 79

Conread position: 254-648
Cow position: chr29:40471252-40471682 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 292
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 31, 0

Conread position: 254-662
Cow position: chr29:41184422-41183981 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 295
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 98, 64

Conread position: 278-648
Cow position: chr29:40619234-40618821 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 278
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 127

Conread position: 280-486
Cow position: chr29:9639931-9639712 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 116

Conread position: 293-492
Cow position: chr29:9681591-9681386 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 41

Conread position: 301-492
Cow position: chr29:2429747-2429947 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 95

Conread position: 301-616
Cow position: chr29:18412638-18412964 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 18

Conread position: 350-648
Cow position: chr29:14082211-14081890 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 162

Conread position: 361-648
Cow position: chr29:17137822-17138119 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 40

Conread position: 381-646
Cow position: chr29:18399000-18399279 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 8

Conread position: 407-647
Cow position: chr29:1511656-1511411 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 86

Show alignments to all cow chromosomes.