Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8021E07.5
        

               Conread position:
               188-357
               

               Cow position:
               chr11:53510571-53510404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               57, 23
               

               Conread position:
               188-415
               

               Cow position:
               chr11:63435448-63435693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               57, 27
               

               Conread position:
               188-425
               

               Cow position:
               chr11:249554-249324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               57, 12
               

               Conread position:
               188-430
               

               Cow position:
               chr11:27719391-27719153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               58, 26
               

               Conread position:
               188-437
               

               Cow position:
               chr11:7924660-7924408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 20
               

               Conread position:
               189-431
               

               Cow position:
               chr11:62239675-62239928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               202-423
               

               Cow position:
               chr11:11533987-11533756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               203-427
               

               Cow position:
               chr11:30172250-30172482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               203-428
               

               Cow position:
               chr11:21885774-21886014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               42, 100
               

               Conread position:
               206-435
               

               Cow position:
               chr11:18914969-18915201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               37, 156
               

               Conread position:
               209-451
               

               Cow position:
               chr11:35670006-35669761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               13, 112
               

               Conread position:
               212-434
               

               Cow position:
               chr11:39462573-39462811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               212-444
               

               Cow position:
               chr11:28078453-28078691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               32, 69
               

               Conread position:
               213-348
               

               Cow position:
               chr11:28168471-28168333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               32, 13
               

               Conread position:
               213-349
               

               Cow position:
               chr11:35874052-35873912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               213-357
               

               Cow position:
               chr11:32691017-32690872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 17
               

               Conread position:
               213-364
               

               Cow position:
               chr11:2092287-2092435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               213-364
               

               Cow position:
               chr11:80530317-80530464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               213-368
               

               Cow position:
               chr11:79019108-79018949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               213-369
               

               Cow position:
               chr11:15382552-15382392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               213-372
               

               Cow position:
               chr11:59872880-59873043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               7, 68
               

               Conread position:
               213-379
               

               Cow position:
               chr11:11125613-11125784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 136
               

               Conread position:
               213-419
               

               Cow position:
               chr11:13043195-13042973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               213-421
               

               Cow position:
               chr11:17036579-17036355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               213-425
               

               Cow position:
               chr11:71390610-71390393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               32, 96
               

               Conread position:
               213-427
               

               Cow position:
               chr11:29960249-29960475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               32, 205
               

               Conread position:
               213-427
               

               Cow position:
               chr11:52690569-52690342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               32, 115
               

               Conread position:
               213-431
               

               Cow position:
               chr11:7460665-7460441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 119
               

               Conread position:
               213-433
               

               Cow position:
               chr11:62789081-62789316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               213-439
               

               Cow position:
               chr11:62663281-62663051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               32, 191
               

               Conread position:
               213-444
               

               Cow position:
               chr11:48295984-48296225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               213-449
               

               Cow position:
               chr11:64104950-64105198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               214-344
               

               Cow position:
               chr11:8428463-8428597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-344
               

               Cow position:
               chr11:69652829-69652696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               214-347
               

               Cow position:
               chr11:76822134-76822000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-348
               

               Cow position:
               chr11:70619996-70620134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               214-353
               

               Cow position:
               chr11:64090146-64090003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               12, 135
               

               Conread position:
               214-354
               

               Cow position:
               chr11:377690-377546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-354
               

               Cow position:
               chr11:65767151-65767295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-359
               

               Cow position:
               chr11:53553171-53553317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 15
               

               Conread position:
               214-364
               

               Cow position:
               chr11:43898091-43898244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 48
               

               Conread position:
               214-366
               

               Cow position:
               chr11:5201700-5201545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               214-366
               

               Cow position:
               chr11:20761799-20761950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               31, 79
               

               Conread position:
               214-367
               

               Cow position:
               chr11:1071139-1070982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               214-368
               

               Cow position:
               chr11:29699748-29699589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 49
               

               Conread position:
               214-368
               

               Cow position:
               chr11:31410926-31410768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-368
               

               Cow position:
               chr11:34646541-34646699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-369
               

               Cow position:
               chr11:28644039-28644198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-369
               

               Cow position:
               chr11:69075863-69076021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 49
               

               Conread position:
               214-369
               

               Cow position:
               chr11:69119245-69119405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-369
               

               Cow position:
               chr11:83230448-83230290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               31, 48
               

               Conread position:
               214-370
               

               Cow position:
               chr11:19606529-19606688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               31, 147
               

               Conread position:
               214-371
               

               Cow position:
               chr11:44036676-44036834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 50
               

               Conread position:
               214-372
               

               Cow position:
               chr11:11469696-11469533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-372
               

               Cow position:
               chr11:38211597-38211761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-372
               

               Cow position:
               chr11:68206892-68206726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               214-380
               

               Cow position:
               chr11:47772438-47772268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-382
               

               Cow position:
               chr11:41293866-41293694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-404
               

               Cow position:
               chr11:81162481-81162287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               214-413
               

               Cow position:
               chr11:18851860-18852072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 93
               

               Conread position:
               214-423
               

               Cow position:
               chr11:48544385-48544615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 144
               

               Conread position:
               214-427
               

               Cow position:
               chr11:65157457-65157222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-427
               

               Cow position:
               chr11:69392514-69392712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               214-428
               

               Cow position:
               chr11:23407416-23407644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-428
               

               Cow position:
               chr11:62620328-62620560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-428
               

               Cow position:
               chr11:80639598-80639368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-430
               

               Cow position:
               chr11:17721850-17721615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:4637220-4636986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:35213216-35212983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:45631808-45631594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               214-431
               

               Cow position:
               chr11:46922934-46922700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:49152901-49153128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:49872933-49872699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               214-431
               

               Cow position:
               chr11:83043411-83043180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-432
               

               Cow position:
               chr11:30192127-30192366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               214-433
               

               Cow position:
               chr11:47724856-47725079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               214-433
               

               Cow position:
               chr11:48085870-48086107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-434
               

               Cow position:
               chr11:21728324-21728099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 99
               

               Conread position:
               214-434
               

               Cow position:
               chr11:30830662-30830433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-434
               

               Cow position:
               chr11:30964298-30964533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               114, 100
               

               Conread position:
               214-435
               

               Cow position:
               chr11:20205900-20205667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               214-435
               

               Cow position:
               chr11:50152862-50152622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               214-436
               

               Cow position:
               chr11:2917634-2917401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               31, 115
               

               Conread position:
               214-436
               

               Cow position:
               chr11:17083358-17083119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               214-436
               

               Cow position:
               chr11:70206273-70206507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               63, 93
               

               Conread position:
               214-440
               

               Cow position:
               chr11:15339015-15339253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               28, 104
               

               Conread position:
               214-440
               

               Cow position:
               chr11:67615293-67615058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               73, 191
               

               Conread position:
               214-441
               

               Cow position:
               chr11:36182642-36182888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               214-443
               

               Cow position:
               chr11:33409310-33409067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               31, 194
               

               Conread position:
               214-447
               

               Cow position:
               chr11:23251639-23251396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               31, 58
               

               Conread position:
               214-450
               

               Cow position:
               chr11:30355012-30355247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               214-452
               

               Cow position:
               chr11:52297267-52297017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               64, 20
               

               Conread position:
               215-366
               

               Cow position:
               chr11:44222842-44222992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               25, 65
               

               Conread position:
               215-368
               

               Cow position:
               chr11:2907570-2907419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               30, 63
               

               Conread position:
               215-368
               

               Cow position:
               chr11:3234028-3234185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               215-368
               

               Cow position:
               chr11:61958791-61958635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               27, 117
               

               Conread position:
               215-372
               

               Cow position:
               chr11:3393256-3393094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               215-419
               

               Cow position:
               chr11:26275003-26274791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               144, 102
               

               Conread position:
               215-423
               

               Cow position:
               chr11:6194359-6194567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               139, 54
               

               Conread position:
               215-427
               

               Cow position:
               chr11:49057356-49057566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               215-427
               

               Cow position:
               chr11:64044186-64044400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               30, 139
               

               Conread position:
               215-427
               

               Cow position:
               chr11:67614970-67614742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               215-427
               

               Cow position:
               chr11:78381108-78380886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               215-427
               

               Cow position:
               chr11:84890764-84890544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 93
               

               Conread position:
               215-428
               

               Cow position:
               chr11:63469828-63470042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               30, 139
               

               Conread position:
               215-429
               

               Cow position:
               chr11:64048356-64048576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 184
               

               Conread position:
               215-430
               

               Cow position:
               chr11:80556176-80556404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               215-430
               

               Cow position:
               chr11:80923368-80923140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               30, 195
               

               Conread position:
               215-431
               

               Cow position:
               chr11:41131-41357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               30, 43
               

               Conread position:
               215-431
               

               Cow position:
               chr11:16342276-16342061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               30, 145
               

               Conread position:
               215-431
               

               Cow position:
               chr11:30867136-30867364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               215-431
               

               Cow position:
               chr11:40818682-40818446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 221
               

               Conread position:
               215-431
               

               Cow position:
               chr11:49148992-49149233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               215-432
               

               Cow position:
               chr11:12111500-12111286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               30, 73
               

               Conread position:
               215-434
               

               Cow position:
               chr11:17661043-17661253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 65
               

               Conread position:
               215-435
               

               Cow position:
               chr11:39060649-39060414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               30, 105
               

               Conread position:
               215-436
               

               Cow position:
               chr11:66041237-66041466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               43, 32
               

               Conread position:
               215-437
               

               Cow position:
               chr11:19500836-19500611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               215-437
               

               Cow position:
               chr11:47899221-47899443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 139
               

               Conread position:
               215-438
               

               Cow position:
               chr11:22977921-22977686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               30, 117
               

               Conread position:
               215-439
               

               Cow position:
               chr11:82107941-82107722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               215-441
               

               Cow position:
               chr11:63866706-63866464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               30, 42
               

               Conread position:
               215-446
               

               Cow position:
               chr11:63484899-63485134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               123, 30
               

               Conread position:
               216-342
               

               Cow position:
               chr11:53279758-53279631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-343
               

               Cow position:
               chr11:84490541-84490415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 56
               

               Conread position:
               216-344
               

               Cow position:
               chr11:30483873-30484005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-351
               

               Cow position:
               chr11:52983629-52983767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 134
               

               Conread position:
               216-356
               

               Cow position:
               chr11:261314-261170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-356
               

               Cow position:
               chr11:23128586-23128442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               216-357
               

               Cow position:
               chr11:4199225-4199369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               216-364
               

               Cow position:
               chr11:48474657-48474809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-365
               

               Cow position:
               chr11:8525159-8525007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               29, 132
               

               Conread position:
               216-366
               

               Cow position:
               chr11:25387020-25387175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               29, 141
               

               Conread position:
               216-366
               

               Cow position:
               chr11:47545088-47545238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 130
               

               Conread position:
               216-366
               

               Cow position:
               chr11:62376519-62376366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 86
               

               Conread position:
               216-367
               

               Cow position:
               chr11:82731044-82730889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-368
               

               Cow position:
               chr11:35803089-35803246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-369
               

               Cow position:
               chr11:16907095-16906940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-369
               

               Cow position:
               chr11:48248262-48248101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               216-369
               

               Cow position:
               chr11:48272154-48272311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-369
               

               Cow position:
               chr11:62150937-62150783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-369
               

               Cow position:
               chr11:73924609-73924452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 145
               

               Conread position:
               216-370
               

               Cow position:
               chr11:40608640-40608483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-370
               

               Cow position:
               chr11:83033282-83033128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 104
               

               Conread position:
               216-373
               

               Cow position:
               chr11:7590146-7590306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               29, 64
               

               Conread position:
               216-393
               

               Cow position:
               chr11:16843030-16842851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 110
               

               Conread position:
               216-410
               

               Cow position:
               chr11:24601918-24602123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 189
               

               Conread position:
               216-413
               

               Cow position:
               chr11:18543552-18543352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               31, 72
               

               Conread position:
               216-413
               

               Cow position:
               chr11:77319368-77319581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-421
               

               Cow position:
               chr11:14470324-14470538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               143, 63
               

               Conread position:
               216-423
               

               Cow position:
               chr11:36647300-36647506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               10, 73
               

               Conread position:
               216-423
               

               Cow position:
               chr11:42160101-42159883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               13, 188
               

               Conread position:
               216-423
               

               Cow position:
               chr11:51729240-51729453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               216-423
               

               Cow position:
               chr11:63920100-63919888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-427
               

               Cow position:
               chr11:27746878-27747101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               216-427
               

               Cow position:
               chr11:35153870-35153637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               216-427
               

               Cow position:
               chr11:69977924-69978148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-430
               

               Cow position:
               chr11:22747374-22747159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               216-431
               

               Cow position:
               chr11:20238630-20238863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               216-431
               

               Cow position:
               chr11:41603732-41603514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               29, 111
               

               Conread position:
               216-431
               

               Cow position:
               chr11:70978780-70978548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 179
               

               Conread position:
               216-432
               

               Cow position:
               chr11:259217-258986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               216-432
               

               Cow position:
               chr11:83926003-83926220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               172, 29
               

               Conread position:
               216-433
               

               Cow position:
               chr11:2925342-2925117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 77
               

               Conread position:
               216-435
               

               Cow position:
               chr11:18698831-18699061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               216-435
               

               Cow position:
               chr11:72884640-72884422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               29, 168
               

               Conread position:
               216-437
               

               Cow position:
               chr11:19247245-19247011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 115
               

               Conread position:
               216-437
               

               Cow position:
               chr11:62812996-62812759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               29, 198
               

               Conread position:
               216-441
               

               Cow position:
               chr11:46746585-46746833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               216-443
               

               Cow position:
               chr11:63999134-63998890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               63, 29
               

               Conread position:
               216-444
               

               Cow position:
               chr11:44636801-44636582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               18, 138
               

               Conread position:
               216-447
               

               Cow position:
               chr11:25119977-25119732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               29, 41
               

               Conread position:
               216-450
               

               Cow position:
               chr11:68905123-68904882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               29, 137
               

               Conread position:
               217-342
               

               Cow position:
               chr11:31352597-31352468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               217-357
               

               Cow position:
               chr11:34413385-34413241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-363
               

               Cow position:
               chr11:3282984-3283128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               27, 49
               

               Conread position:
               217-364
               

               Cow position:
               chr11:36238735-36238883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               217-366
               

               Cow position:
               chr11:35684546-35684394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               217-368
               

               Cow position:
               chr11:59702441-59702601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-369
               

               Cow position:
               chr11:34692808-34692964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-369
               

               Cow position:
               chr11:40573377-40573225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               217-370
               

               Cow position:
               chr11:36658864-36658712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 63
               

               Conread position:
               217-375
               

               Cow position:
               chr11:11232498-11232340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 147
               

               Conread position:
               217-377
               

               Cow position:
               chr11:4653018-4652854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-411
               

               Cow position:
               chr11:34113220-34113420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 12
               

               Conread position:
               217-427
               

               Cow position:
               chr11:38639066-38639282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               217-427
               

               Cow position:
               chr11:83032635-83032860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-429
               

               Cow position:
               chr11:27248448-27248674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               217-430
               

               Cow position:
               chr11:27462143-27461925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 113
               

               Conread position:
               217-431
               

               Cow position:
               chr11:27405115-27404884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               28, 92
               

               Conread position:
               217-431
               

               Cow position:
               chr11:30210864-30211072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               71, 28
               

               Conread position:
               217-431
               

               Cow position:
               chr11:33348231-33348012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               217-431
               

               Cow position:
               chr11:40395393-40395624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               30, 118
               

               Conread position:
               217-431
               

               Cow position:
               chr11:42083427-42083640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 71
               

               Conread position:
               217-432
               

               Cow position:
               chr11:13061282-13061066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 139
               

               Conread position:
               217-433
               

               Cow position:
               chr11:17493433-17493658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 120
               

               Conread position:
               217-434
               

               Cow position:
               chr11:4225052-4225277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               28, 69
               

               Conread position:
               217-434
               

               Cow position:
               chr11:77013739-77013960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               28, 71
               

               Conread position:
               217-436
               

               Cow position:
               chr11:57608501-57608274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               27, 71
               

               Conread position:
               217-437
               

               Cow position:
               chr11:18447537-18447308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               217-437
               

               Cow position:
               chr11:44031960-44032199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               190
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               28, 201
               

               Conread position:
               217-442
               

               Cow position:
               chr11:57873782-57874006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               28, 106
               

               Conread position:
               217-444
               

               Cow position:
               chr11:15285660-15285426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 217
               

               Conread position:
               218-344
               

               Cow position:
               chr11:64406184-64406314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               218-364
               

               Cow position:
               chr11:47837276-47837425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               27, 39
               

               Conread position:
               218-367
               

               Cow position:
               chr11:76114600-76114751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               8, 100
               

               Conread position:
               218-369
               

               Cow position:
               chr11:11523511-11523346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               27, 153
               

               Conread position:
               218-369
               

               Cow position:
               chr11:37425186-37425041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               218-369
               

               Cow position:
               chr11:39499312-39499468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               218-413
               

               Cow position:
               chr11:42296664-42296458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               218-414
               

               Cow position:
               chr11:56290467-56290669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               218-423
               

               Cow position:
               chr11:24599431-24599220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               27, 93
               

               Conread position:
               218-431
               

               Cow position:
               chr11:897629-897851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               27, 188
               

               Conread position:
               218-431
               

               Cow position:
               chr11:75874799-75874584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               27, 132
               

               Conread position:
               219-354
               

               Cow position:
               chr11:36329078-36328939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               219-369
               

               Cow position:
               chr11:26845637-26845484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 129
               

               Conread position:
               219-369
               

               Cow position:
               chr11:54334285-54334439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               219-408
               

               Cow position:
               chr11:58927540-58927737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 68
               

               Conread position:
               219-421
               

               Cow position:
               chr11:55761825-55762033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               26, 112
               

               Conread position:
               219-422
               

               Cow position:
               chr11:21852345-21852138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 173
               

               Conread position:
               219-427
               

               Cow position:
               chr11:35536544-35536758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               219-428
               

               Cow position:
               chr11:55494636-55494848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               26, 176
               

               Conread position:
               219-431
               

               Cow position:
               chr11:18785912-18785709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 51
               

               Conread position:
               219-431
               

               Cow position:
               chr11:33824931-33824727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               26, 64
               

               Conread position:
               219-431
               

               Cow position:
               chr11:55052826-55053051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 182
               

               Conread position:
               219-431
               

               Cow position:
               chr11:80616200-80616407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               219-439
               

               Cow position:
               chr11:80820046-80819830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               26, 133
               

               Conread position:
               219-444
               

               Cow position:
               chr11:45435036-45435278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               23, 44
               

               Conread position:
               220-369
               

               Cow position:
               chr11:30954958-30955111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               220-412
               

               Cow position:
               chr11:73354102-73353899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               220-413
               

               Cow position:
               chr11:34467529-34467731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               142, 59
               

               Conread position:
               220-419
               

               Cow position:
               chr11:16801994-16801803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               220-432
               

               Cow position:
               chr11:17278714-17278495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               25, 68
               

               Conread position:
               220-435
               

               Cow position:
               chr11:51196117-51195906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               221-361
               

               Cow position:
               chr11:4430174-4430034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               24, 124
               

               Conread position:
               221-366
               

               Cow position:
               chr11:29946955-29946805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               221-374
               

               Cow position:
               chr11:63909705-63909551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               221-430
               

               Cow position:
               chr11:9270766-9270552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               24, 110
               

               Conread position:
               221-430
               

               Cow position:
               chr11:18572760-18572969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               23, 42
               

               Conread position:
               222-431
               

               Cow position:
               chr11:52380912-52380685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               225-354
               

               Cow position:
               chr11:3248746-3248611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               225-367
               

               Cow position:
               chr11:72292515-72292659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 125
               

               Conread position:
               225-428
               

               Cow position:
               chr11:30895040-30894819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               227-427
               

               Cow position:
               chr11:17676408-17676192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               228-364
               

               Cow position:
               chr11:18587630-18587490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               228-364
               

               Cow position:
               chr11:53717841-53717701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               228-368
               

               Cow position:
               chr11:58938779-58938635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               228-369
               

               Cow position:
               chr11:58173591-58173735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               228-369
               

               Cow position:
               chr11:77705724-77705861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               17, 52
               

               Conread position:
               228-428
               

               Cow position:
               chr11:23272036-23271822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 38
               

               Conread position:
               228-432
               

               Cow position:
               chr11:43360811-43360599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               17, 34
               

               Conread position:
               228-444
               

               Cow position:
               chr11:62742677-62742451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               17, 212
               

               Conread position:
               229-369
               

               Cow position:
               chr11:67312747-67312891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               229-435
               

               Cow position:
               chr11:3896732-3896507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               232-354
               

               Cow position:
               chr11:22499394-22499271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               232-369
               

               Cow position:
               chr11:23586608-23586749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               232-427
               

               Cow position:
               chr11:30493966-30494171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               13, 94
               

               Conread position:
               233-371
               

               Cow position:
               chr11:17638564-17638422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               233-435
               

               Cow position:
               chr11:44878350-44878554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               166, 51
               

               Conread position:
               234-349
               

               Cow position:
               chr11:2900749-2900630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               234-413
               

               Cow position:
               chr11:28993765-28993579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               51, 86
               

               Conread position:
               234-427
               

               Cow position:
               chr11:30843047-30842842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               11, 114
               

               Conread position:
               234-430
               

               Cow position:
               chr11:22027416-22027231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               81, 124
               

               Conread position:
               234-437
               

               Cow position:
               chr11:17227670-17227460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               11, 197
               

               Conread position:
               235-369
               

               Cow position:
               chr11:71021974-71022113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               237-427
               

               Cow position:
               chr11:67600759-67600961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               238-423
               

               Cow position:
               chr11:84764012-84764196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               7, 47
               

               Conread position:
               239-437
               

               Cow position:
               chr11:74316687-74316898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               43, 97
               

               Conread position:
               239-441
               

               Cow position:
               chr11:63165669-63165454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               240-427
               

               Cow position:
               chr11:58813094-58812897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               243-369
               

               Cow position:
               chr11:8107426-8107555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               243-431
               

               Cow position:
               chr11:31227944-31228140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               46, 174
               

               Conread position:
               243-435
               

               Cow position:
               chr11:905401-905192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 108
               

               Conread position:
               243-444
               

               Cow position:
               chr11:56114920-56115136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               44, 202
               

               Conread position:
               244-432
               

               Cow position:
               chr11:33993147-33993339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 164
               

               Conread position:
               245-433
               

               Cow position:
               chr11:15366989-15366790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               34, 191
               

               Conread position:
               246-431
               

               Cow position:
               chr11:9699260-9699068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               246-431
               

               Cow position:
               chr11:15607987-15607802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               38, 106
               

               Conread position:
               246-434
               

               Cow position:
               chr11:63478362-63478551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               112, 39
               

               Conread position:
               246-450
               

               Cow position:
               chr11:48315412-48315192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               248-427
               

               Cow position:
               chr11:48900858-48900676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               248-442
               

               Cow position:
               chr11:67948755-67948561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               45, 159
               

               Conread position:
               248-452
               

               Cow position:
               chr11:30986628-30986843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               116, 197
               

               Conread position:
               249-435
               

               Cow position:
               chr11:37336101-37335913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               249-440
               

               Cow position:
               chr11:86895364-86895567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               36, 82
               

               Conread position:
               252-432
               

               Cow position:
               chr11:46784465-46784651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               252-444
               

               Cow position:
               chr11:19890833-19891035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               106, 188
               

               Conread position:
               252-448
               

               Cow position:
               chr11:17559121-17559319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 79
               

               Conread position:
               253-366
               

               Cow position:
               chr11:52415427-52415539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               90
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               253-428
               

               Cow position:
               chr11:22884405-22884590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               255-406
               

               Cow position:
               chr11:27449621-27449470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               103, 84
               

               Conread position:
               255-430
               

               Cow position:
               chr11:80586268-80586451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               33, 172
               

               Conread position:
               255-442
               

               Cow position:
               chr11:25320179-25320364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               34, 107
               

               Conread position:
               256-431
               

               Cow position:
               chr11:66685911-66685723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               257-427
               

               Cow position:
               chr11:38194194-38194360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               257-437
               

               Cow position:
               chr11:63499131-63498939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               98, 185
               

               Conread position:
               258-431
               

               Cow position:
               chr11:18484189-18484014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 5
               

               Conread position:
               258-431
               

               Cow position:
               chr11:25721995-25721818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               34, 9
               

               Conread position:
               260-431
               

               Cow position:
               chr11:46499009-46499178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               28, 96
               

               Conread position:
               261-433
               

               Cow position:
               chr11:77227538-77227720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               261-441
               

               Cow position:
               chr11:58185882-58186069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               265-437
               

               Cow position:
               chr11:54872753-54872568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               268-431
               

               Cow position:
               chr11:15591465-15591293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               269-427
               

               Cow position:
               chr11:37564884-37565052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               70, 61
               

               Conread position:
               274-435
               

               Cow position:
               chr11:62483946-62483783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               275-451
               

               Cow position:
               chr11:8422101-8421918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               277-427
               

               Cow position:
               chr11:48247043-48246895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               69, 82
               

               Conread position:
               277-431
               

               Cow position:
               chr11:74839629-74839790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               85, 127
               

               Conread position:
               277-437
               

               Cow position:
               chr11:42206440-42206609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               81, 129
               

               Conread position:
               278-423
               

               Cow position:
               chr11:84968397-84968544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               80, 120
               

               Conread position:
               287-427
               

               Cow position:
               chr11:35276297-35276434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               287-448
               

               Cow position:
               chr11:65565098-65564938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               289-427
               

               Cow position:
               chr11:1841994-1842140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               292-427
               

               Cow position:
               chr11:57170565-57170427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               292-435
               

               Cow position:
               chr11:75918626-75918766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               309-430
               

               Cow position:
               chr11:9898061-9897944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 0
               
Show alignments to all cow chromosomes.
Conread position:	188-357
Cow position:	chr11:53510571-53510404 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	123
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	57, 23
Conread position:	188-415
Cow position:	chr11:63435448-63435693 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	172
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	57, 27
Conread position:	188-425
Cow position:	chr11:249554-249324 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	170
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	57, 12
Conread position:	188-430
Cow position:	chr11:27719391-27719153 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	176
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	58, 26
Conread position:	188-437
Cow position:	chr11:7924660-7924408 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	178
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	57, 20
Conread position:	189-431
Cow position:	chr11:62239675-62239928 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	184
Alignm E-value:	6e-33
Alignm gaps (pig, cow):	95, 19
Conread position:	202-423
Cow position:	chr11:11533987-11533756 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	179
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	43, 22
Conread position:	203-427
Cow position:	chr11:30172250-30172482 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	176
Alignm E-value:	9e-36
Alignm gaps (pig, cow):	6, 18
Conread position:	203-428
Cow position:	chr11:21885774-21886014 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	180
Alignm E-value:	8e-35
Alignm gaps (pig, cow):	42, 100
Conread position:	206-435
Cow position:	chr11:18914969-18915201 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	178
Alignm E-value:	5.99756e-43
Alignm gaps (pig, cow):	37, 156
Conread position:	209-451
Cow position:	chr11:35670006-35669761 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	182
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	13, 112
Conread position:	212-434
Cow position:	chr11:39462573-39462811 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	174
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	33, 120
Conread position:	212-444
Cow position:	chr11:28078453-28078691 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	174
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	32, 69
Conread position:	213-348
Cow position:	chr11:28168471-28168333 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	110
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	32, 13
Conread position:	213-349
Cow position:	chr11:35874052-35873912 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	112
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	32, 0
Conread position:	213-357
Cow position:	chr11:32691017-32690872 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	116
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	32, 17
Conread position:	213-364
Cow position:	chr11:2092287-2092435 (view UCSC Genome Browser custom track)
Alignm length:	158
Alignm identity:	121
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	29, 47
Conread position:	213-368
Cow position:	chr11:79019108-79018949 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	125
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	29, 0
Conread position:	213-369
Cow position:	chr11:15382552-15382392 (view UCSC Genome Browser custom track)
Alignm length:	161
Alignm identity:	127
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	32, 0
Conread position:	213-372
Cow position:	chr11:59872880-59873043 (view UCSC Genome Browser custom track)
Alignm length:	166
Alignm identity:	126
Alignm E-value:	8e-25
Alignm gaps (pig, cow):	7, 68