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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8021E07.5
        

               
Conread position:
               
188-431
               

               
Cow position:
               
chr28:10053379-10053124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
189-369
               

               
Cow position:
               
chr28:12964522-12964704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
197-422
               

               
Cow position:
               
chr28:7267985-7267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
205-428
               

               
Cow position:
               
chr28:24646558-24646788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
210-369
               

               
Cow position:
               
chr28:18770054-18770213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
212-380
               

               
Cow position:
               
chr28:7388795-7388628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
212-432
               

               
Cow position:
               
chr28:11987145-11987372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
212-432
               

               
Cow position:
               
chr28:12055383-12055610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
212-433
               

               
Cow position:
               
chr28:21046603-21046380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
213-348
               

               
Cow position:
               
chr28:34561321-34561455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chr28:3914689-3914895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
213-430
               

               
Cow position:
               
chr28:23724489-23724262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
213-434
               

               
Cow position:
               
chr28:22500524-22500294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
213-435
               

               
Cow position:
               
chr28:7350627-7350862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
32, 197
               

               
Conread position:
               
213-440
               

               
Cow position:
               
chr28:5074535-5074304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chr28:17949140-17948896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
214-345
               

               
Cow position:
               
chr28:2872893-2873027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
214-349
               

               
Cow position:
               
chr28:15043887-15043749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-357
               

               
Cow position:
               
chr28:11348398-11348543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 117
               

               
Conread position:
               
214-362
               

               
Cow position:
               
chr28:26531302-26531153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
214-366
               

               
Cow position:
               
chr28:11752166-11752009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
214-366
               

               
Cow position:
               
chr28:28164063-28164215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
214-369
               

               
Cow position:
               
chr28:12430579-12430737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
214-369
               

               
Cow position:
               
chr28:19026031-19025872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-369
               

               
Cow position:
               
chr28:33052009-33052169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr28:3408244-3408081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
214-372
               

               
Cow position:
               
chr28:25596604-25596764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
214-388
               

               
Cow position:
               
chr28:2898963-2899142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-399
               

               
Cow position:
               
chr28:4938787-4938972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
214-406
               

               
Cow position:
               
chr28:16211126-16210918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 129
               

               
Conread position:
               
214-408
               

               
Cow position:
               
chr28:8022128-8021925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-423
               

               
Cow position:
               
chr28:24082244-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-424
               

               
Cow position:
               
chr28:6975215-6975435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr28:777649-777880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr28:5437111-5436882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr28:12991110-12991339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
214-427
               

               
Cow position:
               
chr28:30327114-30326897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
214-428
               

               
Cow position:
               
chr28:11527284-11527054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-430
               

               
Cow position:
               
chr28:3445506-3445272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
214-430
               

               
Cow position:
               
chr28:11422839-11422612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
214-430
               

               
Cow position:
               
chr28:30746756-30746531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:4013058-4013291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:4834870-4834634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:5577500-5577740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:11866692-11866458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 119
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:19564254-19564027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr28:22813236-22813456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
214-435
               

               
Cow position:
               
chr28:10863810-10863587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
214-436
               

               
Cow position:
               
chr28:29416742-29416512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
214-437
               

               
Cow position:
               
chr28:33884378-33884617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
214-444
               

               
Cow position:
               
chr28:5205245-5205472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
31, 147
               

               
Conread position:
               
214-444
               

               
Cow position:
               
chr28:26220232-26220463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
214-449
               

               
Cow position:
               
chr28:20124758-20125007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
214-449
               

               
Cow position:
               
chr28:34248055-34247817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
215-331
               

               
Cow position:
               
chr28:16204359-16204239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-369
               

               
Cow position:
               
chr28:6971374-6971215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
215-388
               

               
Cow position:
               
chr28:19222175-19221999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 144
               

               
Conread position:
               
215-402
               

               
Cow position:
               
chr28:21598277-21598091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 142
               

               
Conread position:
               
215-425
               

               
Cow position:
               
chr28:616361-616571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
215-427
               

               
Cow position:
               
chr28:4090079-4089857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
215-427
               

               
Cow position:
               
chr28:6091337-6091560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
215-427
               

               
Cow position:
               
chr28:7009003-7008777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-427
               

               
Cow position:
               
chr28:21844933-21845155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
215-430
               

               
Cow position:
               
chr28:9740441-9740665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-430
               

               
Cow position:
               
chr28:16919194-16918967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr28:4809754-4809979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr28:8787517-8787747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr28:21008690-21008463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 138
               

               
Conread position:
               
215-431
               

               
Cow position:
               
chr28:30937692-30937475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chr28:5204170-5204394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 182
               

               
Conread position:
               
215-432
               

               
Cow position:
               
chr28:19216796-19217021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chr28:5931331-5931555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chr28:7964693-7964467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
215-433
               

               
Cow position:
               
chr28:11816691-11816474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
30, 181
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr28:3740851-3741083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr28:4185882-4186116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr28:5139016-5138786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-437
               

               
Cow position:
               
chr28:11346512-11346276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
215-439
               

               
Cow position:
               
chr28:9426375-9426132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
215-440
               

               
Cow position:
               
chr28:3411012-3410774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 228
               

               
Conread position:
               
215-441
               

               
Cow position:
               
chr28:7498172-7497937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 208
               

               
Conread position:
               
215-442
               

               
Cow position:
               
chr28:4881264-4881027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
215-442
               

               
Cow position:
               
chr28:23410351-23410114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
215-444
               

               
Cow position:
               
chr28:3449278-3449531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
215-446
               

               
Cow position:
               
chr28:11426565-11426325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
216-357
               

               
Cow position:
               
chr28:20759725-20759581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
216-357
               

               
Cow position:
               
chr28:26922392-26922247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
216-364
               

               
Cow position:
               
chr28:10775737-10775582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
216-368
               

               
Cow position:
               
chr28:27161350-27161195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
216-416
               

               
Cow position:
               
chr28:4045825-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
142, 32
               

               
Conread position:
               
216-422
               

               
Cow position:
               
chr28:1099683-1099478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
216-425
               

               
Cow position:
               
chr28:7865303-7865507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 146
               

               
Conread position:
               
216-428
               

               
Cow position:
               
chr28:9636481-9636252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
216-431
               

               
Cow position:
               
chr28:2762171-2762380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
216-431
               

               
Cow position:
               
chr28:4884278-4884045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
216-431
               

               
Cow position:
               
chr28:26614849-26615061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 138
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr28:20173812-20174047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
216-432
               

               
Cow position:
               
chr28:26719319-26719539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
216-433
               

               
Cow position:
               
chr28:17739801-17740035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
216-434
               

               
Cow position:
               
chr28:11059477-11059703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
216-435
               

               
Cow position:
               
chr28:7619175-7618948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
216-435
               

               
Cow position:
               
chr28:9705629-9705869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chr28:3746173-3746410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
216-436
               

               
Cow position:
               
chr28:9285394-9285164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
216-437
               

               
Cow position:
               
chr28:24966363-24966600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
216-452
               

               
Cow position:
               
chr28:3275470-3275696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
217-357
               

               
Cow position:
               
chr28:16246087-16245944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
217-367
               

               
Cow position:
               
chr28:8140459-8140613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
217-367
               

               
Cow position:
               
chr28:10172439-10172286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
217-367
               

               
Cow position:
               
chr28:25399850-25399998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr28:2772690-2772843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr28:29199708-29199863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
217-372
               

               
Cow position:
               
chr28:16346554-16346395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
217-430
               

               
Cow position:
               
chr28:8304224-8304449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr28:4181978-4182209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr28:25249331-25249543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 160
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chr28:4016508-4016736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
28, 186
               

               
Conread position:
               
217-436
               

               
Cow position:
               
chr28:21868434-21868670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
217-445
               

               
Cow position:
               
chr28:3011292-3011043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
218-344
               

               
Cow position:
               
chr28:2862846-2862976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
218-426
               

               
Cow position:
               
chr28:2279612-2279399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
218-432
               

               
Cow position:
               
chr28:3492805-3492578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
218-434
               

               
Cow position:
               
chr28:13474278-13474510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
219-363
               

               
Cow position:
               
chr28:8149653-8149505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
219-364
               

               
Cow position:
               
chr28:12070217-12070359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
219-428
               

               
Cow position:
               
chr28:10589042-10588828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
219-430
               

               
Cow position:
               
chr28:16370104-16369882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr28:4070946-4071166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr28:11585223-11585001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
219-432
               

               
Cow position:
               
chr28:11079287-11079509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
219-435
               

               
Cow position:
               
chr28:10964402-10964621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
220-366
               

               
Cow position:
               
chr28:3147462-3147609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-366
               

               
Cow position:
               
chr28:22148034-22147886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
220-369
               

               
Cow position:
               
chr28:26743606-26743759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-435
               

               
Cow position:
               
chr28:5254854-5255083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-436
               

               
Cow position:
               
chr28:3023933-3023703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-447
               

               
Cow position:
               
chr28:23007750-23007517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
220-451
               

               
Cow position:
               
chr28:14998047-14998289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 213
               

               
Conread position:
               
221-364
               

               
Cow position:
               
chr28:4158936-4159083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
221-369
               

               
Cow position:
               
chr28:2960850-2960696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
221-370
               

               
Cow position:
               
chr28:11828975-11828828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
221-428
               

               
Cow position:
               
chr28:11016389-11016609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
221-431
               

               
Cow position:
               
chr28:4101501-4101720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
221-437
               

               
Cow position:
               
chr28:5684685-5684914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
222-452
               

               
Cow position:
               
chr28:2131942-2131715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
225-428
               

               
Cow position:
               
chr28:29850830-29850617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 180
               

               
Conread position:
               
226-430
               

               
Cow position:
               
chr28:10977827-10978045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
227-434
               

               
Cow position:
               
chr28:7132100-7131880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
228-431
               

               
Cow position:
               
chr28:662094-662308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
228-431
               

               
Cow position:
               
chr28:9294504-9294302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
228-432
               

               
Cow position:
               
chr28:3143887-3143676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
228-437
               

               
Cow position:
               
chr28:8291417-8291628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
228-439
               

               
Cow position:
               
chr28:4823592-4823817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
228-440
               

               
Cow position:
               
chr28:15362567-15362795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 104
               

               
Conread position:
               
230-364
               

               
Cow position:
               
chr28:32179687-32179821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
231-428
               

               
Cow position:
               
chr28:5805662-5805867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
231-428
               

               
Cow position:
               
chr28:8396326-8396530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 185
               

               
Conread position:
               
232-428
               

               
Cow position:
               
chr28:10615954-10615745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chr28:32358100-32358317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
232-442
               

               
Cow position:
               
chr28:18797312-18797527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
232-451
               

               
Cow position:
               
chr28:11884529-11884303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 204
               

               
Conread position:
               
233-421
               

               
Cow position:
               
chr28:25128880-25129082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
233-432
               

               
Cow position:
               
chr28:21207374-21207166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
233-452
               

               
Cow position:
               
chr28:24343364-24343580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
234-372
               

               
Cow position:
               
chr28:16879567-16879709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
234-393
               

               
Cow position:
               
chr28:25675511-25675355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
236-437
               

               
Cow position:
               
chr28:30902122-30902333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
9, 204
               

               
Conread position:
               
243-369
               

               
Cow position:
               
chr28:18533902-18533774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
243-427
               

               
Cow position:
               
chr28:24996609-24996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
243-430
               

               
Cow position:
               
chr28:26784237-26784049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
245-431
               

               
Cow position:
               
chr28:13269737-13269928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
246-427
               

               
Cow position:
               
chr28:2777537-2777734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
246-428
               

               
Cow position:
               
chr28:4876450-4876643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
246-432
               

               
Cow position:
               
chr28:9109223-9109419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
246-450
               

               
Cow position:
               
chr28:20046560-20046770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 194
               

               
Conread position:
               
247-424
               

               
Cow position:
               
chr28:10890727-10890541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
248-434
               

               
Cow position:
               
chr28:2436020-2435828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
107, 85
               

               
Conread position:
               
254-430
               

               
Cow position:
               
chr28:8681411-8681230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
255-427
               

               
Cow position:
               
chr28:11411517-11411335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
256-427
               

               
Cow position:
               
chr28:10891292-10891122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
261-431
               

               
Cow position:
               
chr28:3678384-3678567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
263-431
               

               
Cow position:
               
chr28:26574437-26574609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
111, 93
               

               
Conread position:
               
265-444
               

               
Cow position:
               
chr28:4866541-4866356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
266-437
               

               
Cow position:
               
chr28:8936177-8936363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
270-431
               

               
Cow position:
               
chr28:8516149-8515982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
271-388
               

               
Cow position:
               
chr28:29500435-29500551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
276-441
               

               
Cow position:
               
chr28:4027423-4027253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
277-426
               

               
Cow position:
               
chr28:26868110-26867951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
277-431
               

               
Cow position:
               
chr28:26960868-26960705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
277-440
               

               
Cow position:
               
chr28:10762935-10763105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
277-446
               

               
Cow position:
               
chr28:11305592-11305413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 156
               

               
Conread position:
               
278-442
               

               
Cow position:
               
chr28:11859508-11859348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
147, 77
               

               
Conread position:
               
280-445
               

               
Cow position:
               
chr28:32372289-32372460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
287-427
               

               
Cow position:
               
chr28:16767545-16767405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-431
               

               
Cow position:
               
chr28:2737467-2737318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
287-436
               

               
Cow position:
               
chr28:24238426-24238271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
287-442
               

               
Cow position:
               
chr28:8616883-8617035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
288-427
               

               
Cow position:
               
chr28:4588370-4588518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
288-440
               

               
Cow position:
               
chr28:21263209-21263370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
292-441
               

               
Cow position:
               
chr28:7750960-7750800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
295-430
               

               
Cow position:
               
chr28:3727046-3727183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
306-440
               

               
Cow position:
               
chr28:7808709-7808847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               
Show alignments to all cow chromosomes.