Cow genome map
Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
Conread position: | 481-862 |
Cow position: | chr1:69703225-69702844 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 271 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 17, 9 |
Conread position: | 483-768 |
Cow position: | chr1:13992689-13992411 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 198 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 132, 73 |
Conread position: | 489-768 |
Cow position: | chr1:65187903-65187617 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 205 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 13, 51 |
Conread position: | 499-769 |
Cow position: | chr1:84760465-84760738 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 205 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 92, 28 |
Conread position: | 501-701 |
Cow position: | chr1:80275627-80275832 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 144 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 97, 166 |
Conread position: | 501-759 |
Cow position: | chr1:31978839-31979102 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 57 |
Conread position: | 501-907 |
Cow position: | chr1:89915984-89915592 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 129 |
Conread position: | 501-923 |
Cow position: | chr1:6968854-6968436 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 21 |
Conread position: | 501-924 |
Cow position: | chr1:81454662-81454238 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 11 |
Conread position: | 504-735 |
Cow position: | chr1:93244926-93244690 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 170 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 94, 49 |
Conread position: | 504-743 |
Cow position: | chr1:64753525-64753277 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 190 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 95, 49 |
Conread position: | 504-766 |
Cow position: | chr1:24509715-24509449 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 192 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 44, 34 |
Conread position: | 504-768 |
Cow position: | chr1:85000647-85000916 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 200 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 95, 163 |
Conread position: | 505-768 |
Cow position: | chr1:81491568-81491302 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 195 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 92, 159 |
Conread position: | 505-924 |
Cow position: | chr1:57357506-57357099 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 295 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 93, 221 |
Conread position: | 505-924 |
Cow position: | chr1:88972987-88973411 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 305 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 94, 207 |
Conread position: | 506-705 |
Cow position: | chr1:14169297-14169493 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 148 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 67, 72 |
Conread position: | 510-766 |
Cow position: | chr1:83321413-83321681 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 190 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 512-924 |
Cow position: | chr1:60860352-60859932 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 127 |
Conread position: | 514-797 |
Cow position: | chr1:13314169-13313882 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 208 |
Alignm E-value: | 7e-40 |
Alignm gaps (pig, cow): | 101, 73 |
Conread position: | 514-864 |
Cow position: | chr1:20806900-20807248 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 149 |
Conread position: | 514-924 |
Cow position: | chr1:23086294-23086704 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 152 |
Conread position: | 514-924 |
Cow position: | chr1:61553978-61554388 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 25 |
Conread position: | 514-924 |
Cow position: | chr1:92709239-92708842 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 264 |
Conread position: | 515-759 |
Cow position: | chr1:6309216-6309459 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 180 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 64, 70 |
Conread position: | 515-759 |
Cow position: | chr1:24763760-24764002 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 180 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 99, 23 |
Conread position: | 515-759 |
Cow position: | chr1:67902056-67902299 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 182 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 100, 75 |
Conread position: | 515-760 |
Cow position: | chr1:33914103-33914333 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 181 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 159, 40 |
Conread position: | 515-760 |
Cow position: | chr1:71087122-71086877 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 188 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 100, 42 |
Conread position: | 515-760 |
Cow position: | chr1:89407230-89407469 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 170 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 100, 84 |
Conread position: | 515-760 |
Cow position: | chr1:94744960-94744715 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 180 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 91, 73 |
Conread position: | 515-760 |
Cow position: | chr1:94761262-94761499 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 178 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 29, 58 |
Conread position: | 515-768 |
Cow position: | chr1:4279527-4279784 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 188 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 112, 103 |
Conread position: | 515-912 |
Cow position: | chr1:100046175-100045789 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 266 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 100, 75 |
Conread position: | 515-924 |
Cow position: | chr1:46389403-46389003 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 282 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 101, 75 |
Conread position: | 516-767 |
Cow position: | chr1:55114781-55114525 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 190 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 54, 120 |
Conread position: | 517-759 |
Cow position: | chr1:100397658-100397420 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 172 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 99, 73 |
Conread position: | 517-760 |
Cow position: | chr1:94754222-94753977 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 177 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 98, 73 |
Conread position: | 520-760 |
Cow position: | chr1:43588731-43588495 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 182 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 104, 78 |
Conread position: | 520-829 |
Cow position: | chr1:90845315-90845623 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 216 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 78, 147 |
Conread position: | 520-918 |
Cow position: | chr1:31126750-31127153 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 117 |
Conread position: | 520-918 |
Cow position: | chr1:57854592-57854187 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 120 |
Conread position: | 523-904 |
Cow position: | chr1:17092500-17092111 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 300 |
Conread position: | 524-768 |
Cow position: | chr1:93392077-93391840 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 180 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 92, 40 |
Conread position: | 525-760 |
Cow position: | chr1:15983647-15983879 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 173 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 90, 83 |
Conread position: | 525-873 |
Cow position: | chr1:14382942-14383286 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 248 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 63, 205 |
Conread position: | 533-815 |
Cow position: | chr1:20264473-20264764 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 208 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 68, 30 |
Conread position: | 538-759 |
Cow position: | chr1:7489108-7489328 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 157 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 77, 52 |
Conread position: | 538-760 |
Cow position: | chr1:70171418-70171639 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 168 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 76, 52 |
Conread position: | 557-759 |
Cow position: | chr1:24684292-24684496 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 147 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 58, 49 |
Conread position: | 558-759 |
Cow position: | chr1:35544313-35544516 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 148 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 57, 49 |
Conread position: | 590-864 |
Cow position: | chr1:8146834-8147104 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 126 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 263, 188 |
Conread position: | 597-768 |
Cow position: | chr1:57893454-57893278 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 140 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 600-768 |
Cow position: | chr1:57562975-57562805 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 135 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 15, 112 |
Conread position: | 614-767 |
Cow position: | chr1:80174893-80175048 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 115 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 60, 19 |
Conread position: | 614-924 |
Cow position: | chr1:13680989-13681308 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 220 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 61, 214 |
Conread position: | 616-924 |
Cow position: | chr1:23920802-23921106 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 236 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 60, 17 |
Conread position: | 617-864 |
Cow position: | chr1:4264630-4264875 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 188 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 10, 165 |
Conread position: | 622-768 |
Cow position: | chr1:86643055-86643201 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 117 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 51, 67 |
Conread position: | 640-774 |
Cow position: | chr1:83390622-83390761 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 110 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 641-872 |
Cow position: | chr1:70178260-70178026 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 187 |
Conread position: | 647-924 |
Cow position: | chr1:41607423-41607143 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 208 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 28, 11 |
Conread position: | 655-768 |
Cow position: | chr1:94409060-94409176 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 95 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 695-872 |
Cow position: | chr1:78259326-78259500 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 130 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 97, 121 |
Conread position: | 788-924 |
Cow position: | chr1:77376915-77376781 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 105 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 131, 29 |
Show alignments to all cow chromosomes.