Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 490-747 |
| Cow position: | chr10:38435589-38435331 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 501-768 |
| Cow position: | chr10:16804101-16804375 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 97, 167 |
| Conread position: | 501-918 |
| Cow position: | chr10:69685517-69685925 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 65, 117 |
| Conread position: | 501-924 |
| Cow position: | chr10:592568-592975 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 501-924 |
| Cow position: | chr10:26023777-26023350 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 504-760 |
| Cow position: | chr10:19651333-19651593 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 504-915 |
| Cow position: | chr10:17179034-17179455 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 505-918 |
| Cow position: | chr10:12537543-12537953 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 114 |
| Conread position: | 505-924 |
| Cow position: | chr10:29495527-29495949 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 167 |
| Conread position: | 506-737 |
| Cow position: | chr10:64322883-64322639 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 510-759 |
| Cow position: | chr10:55917565-55917324 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 512-729 |
| Cow position: | chr10:5863799-5864025 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 512-838 |
| Cow position: | chr10:66427809-66427479 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 513-766 |
| Cow position: | chr10:68370922-68370661 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 514-768 |
| Cow position: | chr10:726756-726495 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 514-918 |
| Cow position: | chr10:58840803-58840411 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 139 |
| Conread position: | 515-700 |
| Cow position: | chr10:13333780-13333966 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 84 |
| Conread position: | 515-748 |
| Cow position: | chr10:21372845-21373079 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 91 |
| Conread position: | 515-755 |
| Cow position: | chr10:63475225-63475460 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-756 |
| Cow position: | chr10:23734314-23734075 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 515-759 |
| Cow position: | chr10:23765738-23765496 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-759 |
| Cow position: | chr10:52647692-52647450 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 100, 58 |
| Conread position: | 515-759 |
| Cow position: | chr10:52665707-52665465 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 515-759 |
| Cow position: | chr10:55305665-55305424 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 100, 22 |
| Conread position: | 515-759 |
| Cow position: | chr10:67567110-67566866 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-760 |
| Cow position: | chr10:32981321-32981079 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 515-760 |
| Cow position: | chr10:52666574-52666818 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-767 |
| Cow position: | chr10:16951402-16951147 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 515-768 |
| Cow position: | chr10:63029748-63030000 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 128 |
| Conread position: | 516-767 |
| Cow position: | chr10:46395577-46395826 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 519-767 |
| Cow position: | chr10:62613215-62613461 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 96, 37 |
| Conread position: | 520-769 |
| Cow position: | chr10:3648471-3648724 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 520-924 |
| Cow position: | chr10:4909301-4908893 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 521-771 |
| Cow position: | chr10:34806405-34806653 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 521-912 |
| Cow position: | chr10:10223717-10223323 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 523-768 |
| Cow position: | chr10:15381692-15381439 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 524-912 |
| Cow position: | chr10:28854472-28854859 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 149 |
| Conread position: | 532-855 |
| Cow position: | chr10:14959923-14959598 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 550-760 |
| Cow position: | chr10:36474860-36474650 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 557-767 |
| Cow position: | chr10:40428731-40428519 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 563-924 |
| Cow position: | chr10:50527510-50527853 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 595-768 |
| Cow position: | chr10:55932648-55932473 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 597-768 |
| Cow position: | chr10:8095228-8095056 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 608-771 |
| Cow position: | chr10:42675345-42675511 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 626-907 |
| Cow position: | chr10:65688472-65688756 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 633-757 |
| Cow position: | chr10:29098677-29098799 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.