Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 490-802 |
| Cow position: | chr11:6575571-6575249 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 501-704 |
| Cow position: | chr11:2546284-2546072 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 501-760 |
| Cow position: | chr11:106485-106218 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 249 |
| Conread position: | 501-912 |
| Cow position: | chr11:76599663-76600079 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 140 |
| Conread position: | 501-918 |
| Cow position: | chr11:50649039-50649462 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 139 |
| Conread position: | 501-924 |
| Cow position: | chr11:5292379-5292797 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 68 |
| Conread position: | 501-924 |
| Cow position: | chr11:5440989-5441420 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 194 |
| Conread position: | 504-766 |
| Cow position: | chr11:26305134-26305400 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 504-919 |
| Cow position: | chr11:14135130-14134711 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 320 |
| Conread position: | 505-745 |
| Cow position: | chr11:7051169-7050927 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 505-768 |
| Cow position: | chr11:70888060-70888334 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 505-922 |
| Cow position: | chr11:77161386-77160967 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 106 |
| Conread position: | 513-704 |
| Cow position: | chr11:20990902-20991100 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 513-767 |
| Cow position: | chr11:77178574-77178313 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 86, 158 |
| Conread position: | 513-873 |
| Cow position: | chr11:3160757-3161107 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 514-701 |
| Cow position: | chr11:76871195-76871391 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 157 |
| Conread position: | 514-768 |
| Cow position: | chr11:42119264-42119517 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 514-924 |
| Cow position: | chr11:37334982-37334563 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 150 |
| Conread position: | 514-924 |
| Cow position: | chr11:39276726-39277125 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 515-759 |
| Cow position: | chr11:9755030-9754791 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 515-759 |
| Cow position: | chr11:14353199-14353445 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 515-759 |
| Cow position: | chr11:70058034-70058279 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 86 |
| Conread position: | 515-759 |
| Cow position: | chr11:72416845-72416602 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 515-760 |
| Cow position: | chr11:896488-896737 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-767 |
| Cow position: | chr11:4678281-4678025 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 515-767 |
| Cow position: | chr11:80192761-80192510 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-767 |
| Cow position: | chr11:80343605-80343857 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-768 |
| Cow position: | chr11:30766670-30766929 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 515-860 |
| Cow position: | chr11:7662585-7662234 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 243 |
| Conread position: | 515-924 |
| Cow position: | chr11:64814203-64813787 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 200 |
| Conread position: | 517-759 |
| Cow position: | chr11:32205682-32205924 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 517-760 |
| Cow position: | chr11:32389880-32389634 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 157, 72 |
| Conread position: | 520-760 |
| Cow position: | chr11:3177301-3177545 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 520-760 |
| Cow position: | chr11:49603860-49604099 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 69 |
| Conread position: | 520-763 |
| Cow position: | chr11:62409128-62409363 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 520-767 |
| Cow position: | chr11:39997213-39997459 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 520-767 |
| Cow position: | chr11:63671240-63671486 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 520-768 |
| Cow position: | chr11:12167396-12167652 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 520-768 |
| Cow position: | chr11:79726872-79726611 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 78, 90 |
| Conread position: | 520-912 |
| Cow position: | chr11:38680111-38679720 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 520-924 |
| Cow position: | chr11:30084160-30084562 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 522-918 |
| Cow position: | chr11:40366780-40366386 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 134 |
| Conread position: | 523-768 |
| Cow position: | chr11:66166464-66166217 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 523-918 |
| Cow position: | chr11:37319654-37319252 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 250 |
| Conread position: | 526-767 |
| Cow position: | chr11:81348006-81347760 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 527-768 |
| Cow position: | chr11:30216133-30216372 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 542-760 |
| Cow position: | chr11:11685075-11684859 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 542-780 |
| Cow position: | chr11:63275641-63275890 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 55, 167 |
| Conread position: | 548-768 |
| Cow position: | chr11:26280174-26280394 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 550-760 |
| Cow position: | chr11:86493010-86493220 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 596-768 |
| Cow position: | chr11:70142627-70142806 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 150 |
| Conread position: | 602-760 |
| Cow position: | chr11:66033964-66033803 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 604-763 |
| Cow position: | chr11:61834176-61834016 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 608-918 |
| Cow position: | chr11:26232510-26232821 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 633-776 |
| Cow position: | chr11:58537476-58537618 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 644-760 |
| Cow position: | chr11:63988799-63988918 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 701-924 |
| Cow position: | chr11:35576903-35576680 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 92, 65 |
Show alignments to all cow chromosomes.