Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 488-758 |
| Cow position: | chr12:40549229-40548944 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 498-849 |
| Cow position: | chr12:31870845-31871202 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 327 |
| Conread position: | 499-924 |
| Cow position: | chr12:26292464-26292878 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 191 |
| Conread position: | 501-737 |
| Cow position: | chr12:41778067-41777828 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 189 |
| Conread position: | 501-768 |
| Cow position: | chr12:16352255-16352529 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 240 |
| Conread position: | 501-768 |
| Cow position: | chr12:20225755-20225489 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 501-911 |
| Cow position: | chr12:6931560-6931975 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 501-924 |
| Cow position: | chr12:8494255-8493835 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 105, 52 |
| Conread position: | 501-924 |
| Cow position: | chr12:42786018-42786422 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 97, 82 |
| Conread position: | 504-701 |
| Cow position: | chr12:26174615-26174416 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 163 |
| Conread position: | 504-745 |
| Cow position: | chr12:39552014-39551765 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-918 |
| Cow position: | chr12:45703744-45704158 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 504-924 |
| Cow position: | chr12:2005353-2004938 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 504-924 |
| Cow position: | chr12:39114955-39115361 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 505-767 |
| Cow position: | chr12:4146057-4146323 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 94, 134 |
| Conread position: | 505-913 |
| Cow position: | chr12:16081615-16082030 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 327 |
| Conread position: | 512-768 |
| Cow position: | chr12:21268692-21268426 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 514-760 |
| Cow position: | chr12:11213348-11213096 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 514-768 |
| Cow position: | chr12:31608600-31608858 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 514-774 |
| Cow position: | chr12:34597700-34597961 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 85 |
| Conread position: | 515-704 |
| Cow position: | chr12:10854312-10854124 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-759 |
| Cow position: | chr12:9013897-9014137 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 515-760 |
| Cow position: | chr12:8963803-8963563 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 515-760 |
| Cow position: | chr12:30231675-30231913 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 515-760 |
| Cow position: | chr12:36251703-36251463 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 87 |
| Conread position: | 515-766 |
| Cow position: | chr12:42940845-42941100 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 515-924 |
| Cow position: | chr12:5982144-5982569 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 152 |
| Conread position: | 517-768 |
| Cow position: | chr12:39177476-39177725 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 517-920 |
| Cow position: | chr12:13634907-13634506 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 90, 142 |
| Conread position: | 520-912 |
| Cow position: | chr12:16908580-16908972 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 68, 116 |
| Conread position: | 520-918 |
| Cow position: | chr12:15072700-15073088 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 520-924 |
| Cow position: | chr12:36069079-36069489 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 524-766 |
| Cow position: | chr12:30531958-30531710 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 75, 145 |
| Conread position: | 524-900 |
| Cow position: | chr12:15131955-15131572 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 557-924 |
| Cow position: | chr12:27133602-27133248 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 605-771 |
| Cow position: | chr12:30446356-30446526 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 614-774 |
| Cow position: | chr12:9277041-9276878 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 625-767 |
| Cow position: | chr12:15365605-15365750 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 655-760 |
| Cow position: | chr12:23226163-23226055 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 673-924 |
| Cow position: | chr12:32865811-32865562 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 119, 88 |
| Conread position: | 700-924 |
| Cow position: | chr12:26174188-26173963 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 92, 116 |
Show alignments to all cow chromosomes.