Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 478-918 |
| Cow position: | chr13:55953026-55952592 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 491-924 |
| Cow position: | chr13:6349779-6350240 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 92 |
| Conread position: | 501-768 |
| Cow position: | chr13:14610981-14610714 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 501-768 |
| Cow position: | chr13:31437257-31437531 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 501-924 |
| Cow position: | chr13:20267887-20268305 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 504-768 |
| Cow position: | chr13:20630452-20630720 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 505-768 |
| Cow position: | chr13:25342935-25343204 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 78 |
| Conread position: | 505-912 |
| Cow position: | chr13:48203753-48204155 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 514-912 |
| Cow position: | chr13:8644070-8643664 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 125 |
| Conread position: | 514-915 |
| Cow position: | chr13:41201724-41201320 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 152 |
| Conread position: | 514-918 |
| Cow position: | chr13:25347251-25347624 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 161, 33 |
| Conread position: | 515-865 |
| Cow position: | chr13:51135475-51135841 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 515-906 |
| Cow position: | chr13:26367282-26366883 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 259 |
| Conread position: | 515-924 |
| Cow position: | chr13:17935452-17935851 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 518-760 |
| Cow position: | chr13:53826625-53826874 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 81, 101 |
| Conread position: | 520-760 |
| Cow position: | chr13:12985980-12986227 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 520-760 |
| Cow position: | chr13:15853687-15853446 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 95, 86 |
| Conread position: | 520-918 |
| Cow position: | chr13:56231696-56232099 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 520-922 |
| Cow position: | chr13:44434001-44433593 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 522-768 |
| Cow position: | chr13:42649467-42649710 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 524-769 |
| Cow position: | chr13:13498265-13498512 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 524-924 |
| Cow position: | chr13:16809931-16810330 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 77, 153 |
| Conread position: | 525-873 |
| Cow position: | chr13:25792061-25792420 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 74, 247 |
| Conread position: | 532-768 |
| Cow position: | chr13:19328151-19327907 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 543-760 |
| Cow position: | chr13:34720103-34720310 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 551-918 |
| Cow position: | chr13:56227379-56227756 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 218 |
| Conread position: | 597-767 |
| Cow position: | chr13:27228047-27228218 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 597-912 |
| Cow position: | chr13:51091107-51091431 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 597-924 |
| Cow position: | chr13:17129639-17129974 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 177 |
| Conread position: | 625-924 |
| Cow position: | chr13:20460808-20460509 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 49, 115 |
| Conread position: | 644-924 |
| Cow position: | chr13:22944714-22944450 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 654-760 |
| Cow position: | chr13:34470686-34470577 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.