Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 497-924 |
| Cow position: | chr15:33611945-33611504 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 499-873 |
| Cow position: | chr15:18675874-18675489 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 501-912 |
| Cow position: | chr15:50441931-50442349 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 501-924 |
| Cow position: | chr15:6447485-6447050 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 335 |
| Conread position: | 502-890 |
| Cow position: | chr15:44998093-44997699 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 504-745 |
| Cow position: | chr15:20128903-20128654 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-767 |
| Cow position: | chr15:19934592-19934854 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 110, 86 |
| Conread position: | 504-797 |
| Cow position: | chr15:17005209-17005508 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 158 |
| Conread position: | 504-858 |
| Cow position: | chr15:45696614-45696253 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 504-924 |
| Cow position: | chr15:15632894-15632475 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 504-924 |
| Cow position: | chr15:18213091-18212683 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 112 |
| Conread position: | 505-722 |
| Cow position: | chr15:6309260-6309488 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 505-760 |
| Cow position: | chr15:5845081-5844828 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 84 |
| Conread position: | 505-768 |
| Cow position: | chr15:16431723-16431993 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 70, 166 |
| Conread position: | 505-768 |
| Cow position: | chr15:42659736-42660008 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 506-771 |
| Cow position: | chr15:29882564-29882818 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 169, 85 |
| Conread position: | 507-699 |
| Cow position: | chr15:37755547-37755756 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 510-760 |
| Cow position: | chr15:22579173-22579421 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 512-748 |
| Cow position: | chr15:22516396-22516634 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 514-722 |
| Cow position: | chr15:32432606-32432391 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 514-760 |
| Cow position: | chr15:22548064-22548311 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 152 |
| Conread position: | 514-776 |
| Cow position: | chr15:17189992-17189724 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 77, 114 |
| Conread position: | 514-912 |
| Cow position: | chr15:19729016-19728617 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 514-918 |
| Cow position: | chr15:51241396-51240985 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 515-686 |
| Cow position: | chr15:22892606-22892776 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-693 |
| Cow position: | chr15:37976113-37975932 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 85 |
| Conread position: | 515-700 |
| Cow position: | chr15:33464838-33464643 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 515-759 |
| Cow position: | chr15:29605360-29605594 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 515-759 |
| Cow position: | chr15:37110511-37110268 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 76 |
| Conread position: | 515-760 |
| Cow position: | chr15:674808-675061 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 515-760 |
| Cow position: | chr15:18280009-18280250 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 515-760 |
| Cow position: | chr15:22739487-22739717 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-760 |
| Cow position: | chr15:24399545-24399792 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-760 |
| Cow position: | chr15:47623391-47623149 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 159, 87 |
| Conread position: | 515-912 |
| Cow position: | chr15:45509834-45509445 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 73, 126 |
| Conread position: | 515-915 |
| Cow position: | chr15:32660203-32659800 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-924 |
| Cow position: | chr15:25466087-25466498 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 219 |
| Conread position: | 515-924 |
| Cow position: | chr15:42551412-42551832 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 86, 207 |
| Conread position: | 516-760 |
| Cow position: | chr15:12799581-12799339 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 99, 82 |
| Conread position: | 517-924 |
| Cow position: | chr15:8439753-8439339 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 122 |
| Conread position: | 518-913 |
| Cow position: | chr15:1304293-1304697 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 152 |
| Conread position: | 518-924 |
| Cow position: | chr15:34170349-34170740 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 520-759 |
| Cow position: | chr15:13994502-13994740 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 520-760 |
| Cow position: | chr15:53189624-53189385 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 154, 86 |
| Conread position: | 524-743 |
| Cow position: | chr15:50547597-50547827 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 531-768 |
| Cow position: | chr15:14471013-14470768 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 538-760 |
| Cow position: | chr15:48107678-48107453 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 538-771 |
| Cow position: | chr15:29656426-29656663 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 542-924 |
| Cow position: | chr15:35449707-35449326 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 242 |
| Conread position: | 552-924 |
| Cow position: | chr15:49130383-49130016 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 557-759 |
| Cow position: | chr15:8439208-8439004 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 602-924 |
| Cow position: | chr15:14418164-14418492 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 633-924 |
| Cow position: | chr15:11759914-11759626 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 640-873 |
| Cow position: | chr15:10610205-10609970 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 645-774 |
| Cow position: | chr15:5000056-4999924 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.