Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 487-745 |
| Cow position: | chr16:22243556-22243822 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 488-722 |
| Cow position: | chr16:52619564-52619321 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 498-760 |
| Cow position: | chr16:35447515-35447253 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 116, 101 |
| Conread position: | 501-768 |
| Cow position: | chr16:3160272-3160003 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 501-858 |
| Cow position: | chr16:10178757-10179121 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 118 |
| Conread position: | 501-912 |
| Cow position: | chr16:412426-412020 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 501-912 |
| Cow position: | chr16:17162615-17163032 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 132 |
| Conread position: | 501-924 |
| Cow position: | chr16:13513598-13513166 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 145 |
| Conread position: | 501-924 |
| Cow position: | chr16:40501553-40501961 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 163 |
| Conread position: | 504-745 |
| Cow position: | chr16:1631680-1631921 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-745 |
| Cow position: | chr16:35415668-35415419 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-759 |
| Cow position: | chr16:21726047-21725796 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 121, 84 |
| Conread position: | 504-918 |
| Cow position: | chr16:12092778-12093184 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 505-924 |
| Cow position: | chr16:43861317-43860910 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 252 |
| Conread position: | 510-714 |
| Cow position: | chr16:14179882-14180085 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 512-729 |
| Cow position: | chr16:56209570-56209796 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 512-762 |
| Cow position: | chr16:50508255-50508000 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 86, 129 |
| Conread position: | 512-777 |
| Cow position: | chr16:49911075-49910803 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 513-667 |
| Cow position: | chr16:35446062-35445902 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 514-924 |
| Cow position: | chr16:33435870-33435463 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 515-692 |
| Cow position: | chr16:19942565-19942386 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-723 |
| Cow position: | chr16:7433758-7433552 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 86 |
| Conread position: | 515-733 |
| Cow position: | chr16:47366589-47366373 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 515-741 |
| Cow position: | chr16:5784218-5784445 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 515-760 |
| Cow position: | chr16:55126916-55127162 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-767 |
| Cow position: | chr16:6725386-6725137 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 101, 75 |
| Conread position: | 515-769 |
| Cow position: | chr16:33439634-33439357 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 515-912 |
| Cow position: | chr16:571213-571607 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 53 |
| Conread position: | 515-913 |
| Cow position: | chr16:37100962-37100567 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 146 |
| Conread position: | 515-924 |
| Cow position: | chr16:11484859-11484467 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 515-924 |
| Cow position: | chr16:48896008-48895599 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 516-759 |
| Cow position: | chr16:48800127-48799887 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 516-759 |
| Cow position: | chr16:55132725-55132483 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 517-767 |
| Cow position: | chr16:24587008-24586753 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 518-924 |
| Cow position: | chr16:33377252-33377653 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 85 |
| Conread position: | 520-759 |
| Cow position: | chr16:33531210-33531447 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 520-760 |
| Cow position: | chr16:33710860-33710627 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 95, 86 |
| Conread position: | 520-911 |
| Cow position: | chr16:40522222-40521826 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 521-924 |
| Cow position: | chr16:44460656-44460246 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 522-906 |
| Cow position: | chr16:10669261-10669650 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 248 |
| Conread position: | 525-924 |
| Cow position: | chr16:40511233-40511610 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 119, 54 |
| Conread position: | 531-729 |
| Cow position: | chr16:33874970-33874763 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 108 |
| Conread position: | 531-759 |
| Cow position: | chr16:40415505-40415732 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 535-759 |
| Cow position: | chr16:17734241-17734463 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 48 |
| Conread position: | 552-768 |
| Cow position: | chr16:14182559-14182776 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 597-767 |
| Cow position: | chr16:4141322-4141494 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 600-745 |
| Cow position: | chr16:19263106-19262960 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 620-760 |
| Cow position: | chr16:23923590-23923733 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 633-912 |
| Cow position: | chr16:34028247-34027991 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 220, 31 |
| Conread position: | 640-766 |
| Cow position: | chr16:50231015-50231143 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 643-760 |
| Cow position: | chr16:10764251-10764131 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 679-924 |
| Cow position: | chr16:16724780-16724541 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 680-924 |
| Cow position: | chr16:15258201-15257977 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 173, 90 |
| Conread position: | 685-780 |
| Cow position: | chr16:51083950-51083853 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.