Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 494-760 |
| Cow position: | chr18:52440456-52440196 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 180, 9 |
| Conread position: | 501-871 |
| Cow position: | chr18:4699638-4699257 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 501-924 |
| Cow position: | chr18:46865224-46864792 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 504-737 |
| Cow position: | chr18:25694049-25694287 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 83, 160 |
| Conread position: | 505-924 |
| Cow position: | chr18:51779716-51780137 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 510-815 |
| Cow position: | chr18:11268405-11268720 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 512-772 |
| Cow position: | chr18:8283750-8284004 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 512-924 |
| Cow position: | chr18:46883525-46883103 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 273 |
| Conread position: | 514-727 |
| Cow position: | chr18:4177103-4176883 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 514-912 |
| Cow position: | chr18:29885044-29884658 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 515-688 |
| Cow position: | chr18:15938105-15937933 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-759 |
| Cow position: | chr18:9257219-9257462 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr18:15807644-15807402 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr18:15946654-15946399 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 515-759 |
| Cow position: | chr18:37078502-37078746 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr18:49386544-49386301 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr18:54128136-54128379 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-760 |
| Cow position: | chr18:25694946-25694698 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-767 |
| Cow position: | chr18:8255085-8254848 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-924 |
| Cow position: | chr18:12778907-12779313 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 515-924 |
| Cow position: | chr18:30228766-30228374 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 68 |
| Conread position: | 516-771 |
| Cow position: | chr18:47294115-47293860 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 516-918 |
| Cow position: | chr18:35086887-35087274 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 254 |
| Conread position: | 517-691 |
| Cow position: | chr18:44137872-44137690 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 518-704 |
| Cow position: | chr18:32199562-32199370 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 129 |
| Conread position: | 518-768 |
| Cow position: | chr18:54063432-54063689 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 520-924 |
| Cow position: | chr18:24636237-24635841 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 71 |
| Conread position: | 521-768 |
| Cow position: | chr18:3689239-3689486 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 522-769 |
| Cow position: | chr18:13788143-13788398 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 526-919 |
| Cow position: | chr18:24798845-24799243 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 526-924 |
| Cow position: | chr18:51803825-51804225 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 530-759 |
| Cow position: | chr18:40701696-40701923 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 542-734 |
| Cow position: | chr18:48310572-48310374 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 123 |
| Conread position: | 542-924 |
| Cow position: | chr18:25700559-25700927 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 549-768 |
| Cow position: | chr18:9017605-9017832 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 628-924 |
| Cow position: | chr18:25670236-25670537 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 201 |
Show alignments to all cow chromosomes.