Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 501-759 |
| Cow position: | chr20:33772975-33773245 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 98, 132 |
| Conread position: | 501-922 |
| Cow position: | chr20:13282055-13282474 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 285 |
| Conread position: | 501-924 |
| Cow position: | chr20:37059415-37058984 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 269 |
| Conread position: | 504-759 |
| Cow position: | chr20:19490429-19490690 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 504-761 |
| Cow position: | chr20:13124568-13124839 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 504-768 |
| Cow position: | chr20:13083540-13083268 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 504-768 |
| Cow position: | chr20:35434804-35434547 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 505-924 |
| Cow position: | chr20:37911139-37910734 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 123 |
| Conread position: | 506-871 |
| Cow position: | chr20:1511553-1511890 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 506-924 |
| Cow position: | chr20:41157585-41157161 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 160 |
| Conread position: | 512-766 |
| Cow position: | chr20:22681915-22682166 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 512-768 |
| Cow position: | chr20:23921752-23921499 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 71 |
| Conread position: | 513-919 |
| Cow position: | chr20:2227298-2226890 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 216 |
| Conread position: | 514-737 |
| Cow position: | chr20:22630907-22630692 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 174, 74 |
| Conread position: | 515-741 |
| Cow position: | chr20:31440193-31439968 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 515-759 |
| Cow position: | chr20:28137509-28137752 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 159, 75 |
| Conread position: | 515-760 |
| Cow position: | chr20:35639736-35639485 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 515-768 |
| Cow position: | chr20:35251762-35251507 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 104 |
| Conread position: | 515-841 |
| Cow position: | chr20:22412978-22412666 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 515-873 |
| Cow position: | chr20:8964957-8964587 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 206 |
| Conread position: | 515-924 |
| Cow position: | chr20:17674216-17673831 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 100, 32 |
| Conread position: | 516-767 |
| Cow position: | chr20:35961977-35962220 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 517-906 |
| Cow position: | chr20:19030511-19030898 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 518-760 |
| Cow position: | chr20:36326133-36325884 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 519-759 |
| Cow position: | chr20:3531751-3531990 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 520-689 |
| Cow position: | chr20:38031948-38032124 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 520-703 |
| Cow position: | chr20:649174-649365 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 520-815 |
| Cow position: | chr20:33098411-33098105 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 67, 115 |
| Conread position: | 520-871 |
| Cow position: | chr20:24340099-24340456 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 521-912 |
| Cow position: | chr20:8297812-8298215 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 523-754 |
| Cow position: | chr20:10508135-10508374 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 216 |
| Conread position: | 524-760 |
| Cow position: | chr20:40527432-40527196 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 542-846 |
| Cow position: | chr20:25038905-25039213 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 547-924 |
| Cow position: | chr20:35181740-35181346 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 595-774 |
| Cow position: | chr20:3077174-3076996 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 597-857 |
| Cow position: | chr20:40204150-40203893 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 617-873 |
| Cow position: | chr20:13079971-13080234 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 620-774 |
| Cow position: | chr20:31431264-31431112 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 725-907 |
| Cow position: | chr20:649363-649543 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 41 |
Show alignments to all cow chromosomes.