Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 496-766 |
| Cow position: | chr21:19092736-19092470 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 105, 87 |
| Conread position: | 501-907 |
| Cow position: | chr21:17788356-17787949 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 98, 287 |
| Conread position: | 504-745 |
| Cow position: | chr21:3475218-3475462 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-745 |
| Cow position: | chr21:47962473-47962720 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 505-760 |
| Cow position: | chr21:10556575-10556311 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 514-768 |
| Cow position: | chr21:18171988-18171730 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 514-768 |
| Cow position: | chr21:18572028-18571768 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 222 |
| Conread position: | 514-768 |
| Cow position: | chr21:42179606-42179869 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 515-759 |
| Cow position: | chr21:24935525-24935768 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-760 |
| Cow position: | chr21:6729115-6729362 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 515-760 |
| Cow position: | chr21:14787557-14787314 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 515-760 |
| Cow position: | chr21:36212312-36212069 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 100, 86 |
| Conread position: | 515-760 |
| Cow position: | chr21:42853811-42853562 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 99, 83 |
| Conread position: | 515-771 |
| Cow position: | chr21:19867007-19866751 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 515-924 |
| Cow position: | chr21:20016241-20015815 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 125 |
| Conread position: | 516-767 |
| Cow position: | chr21:28391545-28391794 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 68 |
| Conread position: | 517-760 |
| Cow position: | chr21:32404499-32404743 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 518-924 |
| Cow position: | chr21:2802846-2802438 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 519-758 |
| Cow position: | chr21:42228078-42227837 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 96, 87 |
| Conread position: | 520-767 |
| Cow position: | chr21:40644925-40644679 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 520-902 |
| Cow position: | chr21:28768175-28768569 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 520-924 |
| Cow position: | chr21:13860878-13861265 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 521-912 |
| Cow position: | chr21:21407883-21407479 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 523-850 |
| Cow position: | chr21:8375770-8375449 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 526-912 |
| Cow position: | chr21:47356714-47356322 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 246 |
| Conread position: | 533-912 |
| Cow position: | chr21:35322634-35323024 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 534-766 |
| Cow position: | chr21:7402856-7402619 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 567-859 |
| Cow position: | chr21:41070441-41070736 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 595-768 |
| Cow position: | chr21:23236798-23236619 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 600-766 |
| Cow position: | chr21:15047984-15048154 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 604-766 |
| Cow position: | chr21:36667197-36667031 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 606-767 |
| Cow position: | chr21:41413393-41413230 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 625-768 |
| Cow position: | chr21:18485837-18485692 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 633-912 |
| Cow position: | chr21:12208640-12208363 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 648-890 |
| Cow position: | chr21:40725037-40724793 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 120 |
| Conread position: | 673-924 |
| Cow position: | chr21:3961911-3962161 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 88 |
| Conread position: | 674-924 |
| Cow position: | chr21:10237577-10237820 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 713-924 |
| Cow position: | chr21:10170854-10171063 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 12 |
Show alignments to all cow chromosomes.