Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 501-760 |
| Cow position: | chr27:22567568-22567831 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 138 |
| Conread position: | 501-768 |
| Cow position: | chr27:20754179-20754447 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 113, 84 |
| Conread position: | 501-892 |
| Cow position: | chr27:14152227-14151823 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 165 |
| Conread position: | 501-924 |
| Cow position: | chr27:14138982-14139412 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 316 |
| Conread position: | 504-745 |
| Cow position: | chr27:3082735-3082984 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 504-759 |
| Cow position: | chr27:29996284-29996024 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 504-765 |
| Cow position: | chr27:1669690-1669946 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 504-873 |
| Cow position: | chr27:29498974-29498603 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 149 |
| Conread position: | 505-768 |
| Cow position: | chr27:23877784-23877519 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 508-760 |
| Cow position: | chr27:29489273-29489523 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 107, 87 |
| Conread position: | 512-766 |
| Cow position: | chr27:14333503-14333762 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 514-766 |
| Cow position: | chr27:14181499-14181750 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 87, 156 |
| Conread position: | 514-767 |
| Cow position: | chr27:23190688-23190428 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 515-701 |
| Cow position: | chr27:7634642-7634449 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 515-711 |
| Cow position: | chr27:22989333-22989528 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-737 |
| Cow position: | chr27:7148428-7148642 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 159, 75 |
| Conread position: | 515-756 |
| Cow position: | chr27:58311-58071 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr27:18467293-18467536 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr27:21601393-21601151 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 515-759 |
| Cow position: | chr27:26812935-26813180 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 515-760 |
| Cow position: | chr27:29523191-29522960 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 515-760 |
| Cow position: | chr27:30988054-30988301 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-768 |
| Cow position: | chr27:7086496-7086240 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 515-771 |
| Cow position: | chr27:30247375-30247121 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 97, 74 |
| Conread position: | 515-776 |
| Cow position: | chr27:29359050-29358783 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 516-760 |
| Cow position: | chr27:22803841-22803603 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 516-924 |
| Cow position: | chr27:3912291-3911877 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 124 |
| Conread position: | 518-924 |
| Cow position: | chr27:14680910-14681301 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 519-905 |
| Cow position: | chr27:23052835-23052443 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 520-756 |
| Cow position: | chr27:21527711-21527947 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 535-757 |
| Cow position: | chr27:530880-530654 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 562-767 |
| Cow position: | chr27:2392631-2392427 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 562-924 |
| Cow position: | chr27:26501845-26502201 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 36, 108 |
| Conread position: | 595-768 |
| Cow position: | chr27:22123789-22123966 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 597-871 |
| Cow position: | chr27:18109588-18109867 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 707-924 |
| Cow position: | chr27:7633467-7633247 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 25 |
Show alignments to all cow chromosomes.