Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 491-924 |
| Cow position: | chr29:18182854-18183278 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 498-906 |
| Cow position: | chr29:28794942-28794525 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 327 |
| Conread position: | 501-924 |
| Cow position: | chr29:12897019-12897433 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 207 |
| Conread position: | 501-924 |
| Cow position: | chr29:43994454-43994046 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 504-690 |
| Cow position: | chr29:32844518-32844710 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 504-692 |
| Cow position: | chr29:20706683-20706490 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 504-924 |
| Cow position: | chr29:30723676-30723262 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 111, 83 |
| Conread position: | 505-841 |
| Cow position: | chr29:36638954-36638622 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 195 |
| Conread position: | 514-924 |
| Cow position: | chr29:17102668-17102276 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 515-737 |
| Cow position: | chr29:14499050-14499261 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-737 |
| Cow position: | chr29:17212455-17212244 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 515-759 |
| Cow position: | chr29:8940614-8940865 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 119 |
| Conread position: | 515-759 |
| Cow position: | chr29:32882051-32882294 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-759 |
| Cow position: | chr29:36571247-36571006 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 515-762 |
| Cow position: | chr29:26897702-26897973 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 515-767 |
| Cow position: | chr29:28012452-28012701 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 515-768 |
| Cow position: | chr29:38051016-38051278 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 125 |
| Conread position: | 515-768 |
| Cow position: | chr29:42198556-42198820 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 515-859 |
| Cow position: | chr29:6390016-6389665 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 298 |
| Conread position: | 515-890 |
| Cow position: | chr29:30690988-30691371 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 149 |
| Conread position: | 515-912 |
| Cow position: | chr29:28846999-28847404 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 115 |
| Conread position: | 515-924 |
| Cow position: | chr29:26597066-26596666 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 84, 146 |
| Conread position: | 517-873 |
| Cow position: | chr29:11449702-11450051 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 520-759 |
| Cow position: | chr29:44693471-44693233 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 520-860 |
| Cow position: | chr29:15852674-15852338 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 79, 188 |
| Conread position: | 521-924 |
| Cow position: | chr29:33435311-33434896 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 308 |
| Conread position: | 522-760 |
| Cow position: | chr29:420929-420693 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 93, 63 |
| Conread position: | 523-912 |
| Cow position: | chr29:5624758-5624362 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 218 |
| Conread position: | 531-759 |
| Cow position: | chr29:3365760-3365987 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 546-774 |
| Cow position: | chr29:31236559-31236320 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 557-924 |
| Cow position: | chr29:32104437-32104093 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 562-756 |
| Cow position: | chr29:40588077-40587886 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 604-859 |
| Cow position: | chr29:5523384-5523136 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 85, 117 |
| Conread position: | 700-911 |
| Cow position: | chr29:16478384-16478595 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 120 |
Show alignments to all cow chromosomes.