Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 461-763 |
| Cow position: | chr3:56308581-56308280 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 154, 35 |
| Conread position: | 501-723 |
| Cow position: | chr3:82508551-82508320 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 501-768 |
| Cow position: | chr3:2059675-2059943 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 160 |
| Conread position: | 501-768 |
| Cow position: | chr3:49005985-49006257 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 97, 56 |
| Conread position: | 501-898 |
| Cow position: | chr3:7830740-7830325 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 281 |
| Conread position: | 501-905 |
| Cow position: | chr3:6762597-6762176 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 282 |
| Conread position: | 501-912 |
| Cow position: | chr3:11030628-11030221 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 91 |
| Conread position: | 501-918 |
| Cow position: | chr3:49850273-49849850 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 154 |
| Conread position: | 501-924 |
| Cow position: | chr3:59205279-59205695 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 504-745 |
| Cow position: | chr3:45838659-45838909 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 95, 8 |
| Conread position: | 504-751 |
| Cow position: | chr3:19239060-19238817 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 504-760 |
| Cow position: | chr3:28724514-28724764 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 505-745 |
| Cow position: | chr3:14932986-14933233 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 75, 176 |
| Conread position: | 505-760 |
| Cow position: | chr3:77333161-77332910 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 505-873 |
| Cow position: | chr3:28464914-28464560 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 505-912 |
| Cow position: | chr3:17642099-17641678 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 83, 128 |
| Conread position: | 505-924 |
| Cow position: | chr3:33020809-33020406 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 96, 135 |
| Conread position: | 510-753 |
| Cow position: | chr3:83785881-83785625 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 88, 238 |
| Conread position: | 512-768 |
| Cow position: | chr3:84919029-84919291 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 71 |
| Conread position: | 513-900 |
| Cow position: | chr3:34868096-34868446 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 514-866 |
| Cow position: | chr3:28692403-28692060 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 514-918 |
| Cow position: | chr3:10215446-10215850 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 515-701 |
| Cow position: | chr3:3803628-3803811 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 515-704 |
| Cow position: | chr3:42936498-42936311 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-755 |
| Cow position: | chr3:3253992-3253753 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 515-759 |
| Cow position: | chr3:28443538-28443781 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr3:32168146-32168387 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr3:35352808-35352573 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-760 |
| Cow position: | chr3:14296051-14296294 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 515-760 |
| Cow position: | chr3:48091355-48091111 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 159, 91 |
| Conread position: | 515-760 |
| Cow position: | chr3:81386995-81387242 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-766 |
| Cow position: | chr3:60067567-60067839 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 515-767 |
| Cow position: | chr3:7812463-7812712 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 515-767 |
| Cow position: | chr3:34398963-34399209 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-767 |
| Cow position: | chr3:78549079-78548826 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 515-768 |
| Cow position: | chr3:22697009-22696746 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 517-924 |
| Cow position: | chr3:19696289-19696683 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 520-730 |
| Cow position: | chr3:82515934-82515718 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 520-760 |
| Cow position: | chr3:28207530-28207766 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 520-760 |
| Cow position: | chr3:28485258-28485494 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 520-767 |
| Cow position: | chr3:6049335-6049589 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 520-846 |
| Cow position: | chr3:7810507-7810181 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 114, 86 |
| Conread position: | 520-873 |
| Cow position: | chr3:1839461-1839819 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 250 |
| Conread position: | 520-873 |
| Cow position: | chr3:65526256-65525901 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 71 |
| Conread position: | 520-913 |
| Cow position: | chr3:10688210-10687810 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 521-760 |
| Cow position: | chr3:84955061-84954822 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 522-760 |
| Cow position: | chr3:31360424-31360188 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 523-737 |
| Cow position: | chr3:77943672-77943888 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 523-768 |
| Cow position: | chr3:6190034-6190285 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 523-811 |
| Cow position: | chr3:11952876-11952581 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 525-760 |
| Cow position: | chr3:3251305-3251540 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 74, 139 |
| Conread position: | 557-760 |
| Cow position: | chr3:6645325-6645525 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 562-760 |
| Cow position: | chr3:7809700-7809896 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 562-762 |
| Cow position: | chr3:48095469-48095267 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 600-745 |
| Cow position: | chr3:25899332-25899182 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 604-767 |
| Cow position: | chr3:29705385-29705547 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 626-768 |
| Cow position: | chr3:36783568-36783426 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 631-767 |
| Cow position: | chr3:48037552-48037412 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 632-892 |
| Cow position: | chr3:9195099-9194834 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 136 |
| Conread position: | 641-769 |
| Cow position: | chr3:24773097-24773232 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 641-906 |
| Cow position: | chr3:2306464-2306200 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 645-767 |
| Cow position: | chr3:36780824-36780700 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 652-913 |
| Cow position: | chr3:74711143-74711396 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 119 |
| Conread position: | 659-899 |
| Cow position: | chr3:44437954-44437713 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 99 |
Show alignments to all cow chromosomes.