Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 488-924 |
| Cow position: | chr4:66835654-66836099 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 262 |
| Conread position: | 500-768 |
| Cow position: | chr4:48235891-48236163 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 100, 61 |
| Conread position: | 501-768 |
| Cow position: | chr4:44085907-44086182 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 139 |
| Conread position: | 501-769 |
| Cow position: | chr4:3463727-3464004 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 138 |
| Conread position: | 501-769 |
| Cow position: | chr4:59531535-59531812 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 501-913 |
| Cow position: | chr4:61152005-61152420 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 501-924 |
| Cow position: | chr4:42980874-42981306 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 284 |
| Conread position: | 504-729 |
| Cow position: | chr4:12652312-12652079 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 504-745 |
| Cow position: | chr4:5228960-5228714 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 504-745 |
| Cow position: | chr4:12226617-12226862 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-745 |
| Cow position: | chr4:14528538-14528289 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-768 |
| Cow position: | chr4:10980352-10980091 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 504-768 |
| Cow position: | chr4:28285793-28286068 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 504-768 |
| Cow position: | chr4:65944719-65944455 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 510-924 |
| Cow position: | chr4:67567911-67568302 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 156 |
| Conread position: | 511-760 |
| Cow position: | chr4:13150292-13150553 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 514-724 |
| Cow position: | chr4:28223797-28224014 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 127 |
| Conread position: | 515-704 |
| Cow position: | chr4:6655091-6655277 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 515-759 |
| Cow position: | chr4:23122682-23122439 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 515-759 |
| Cow position: | chr4:41123418-41123180 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 75 |
| Conread position: | 515-759 |
| Cow position: | chr4:64673725-64673481 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 159, 93 |
| Conread position: | 515-760 |
| Cow position: | chr4:29905785-29905543 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 515-760 |
| Cow position: | chr4:31596865-31596610 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 110, 75 |
| Conread position: | 515-763 |
| Cow position: | chr4:32796345-32796592 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-767 |
| Cow position: | chr4:47132400-47132651 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-768 |
| Cow position: | chr4:57717304-57717049 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 515-771 |
| Cow position: | chr4:60094120-60093867 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-851 |
| Cow position: | chr4:63398814-63398475 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 515-856 |
| Cow position: | chr4:63394217-63393877 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 516-759 |
| Cow position: | chr4:7160713-7160471 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 516-924 |
| Cow position: | chr4:45451301-45451687 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 517-760 |
| Cow position: | chr4:14424345-14424102 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 520-768 |
| Cow position: | chr4:43420835-43420579 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 94 |
| Conread position: | 520-768 |
| Cow position: | chr4:44621630-44621885 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 520-775 |
| Cow position: | chr4:11169037-11169303 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 520-776 |
| Cow position: | chr4:32024840-32024580 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 520-900 |
| Cow position: | chr4:18006341-18005947 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 119 |
| Conread position: | 520-912 |
| Cow position: | chr4:58431866-58431465 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 520-913 |
| Cow position: | chr4:43465824-43465431 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 118 |
| Conread position: | 520-924 |
| Cow position: | chr4:14480408-14480007 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 146 |
| Conread position: | 521-774 |
| Cow position: | chr4:3868552-3868811 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 521-918 |
| Cow position: | chr4:54142171-54141772 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 522-775 |
| Cow position: | chr4:42485301-42485558 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 567-748 |
| Cow position: | chr4:7983355-7983530 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 576-760 |
| Cow position: | chr4:57725775-57725591 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 7 |
| Conread position: | 597-911 |
| Cow position: | chr4:38925545-38925864 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 600-760 |
| Cow position: | chr4:12701927-12702085 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 605-760 |
| Cow position: | chr4:14576295-14576137 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 606-759 |
| Cow position: | chr4:67562698-67562542 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 614-743 |
| Cow position: | chr4:44754007-44753874 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 706-907 |
| Cow position: | chr4:10419253-10419055 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 148, 77 |
Show alignments to all cow chromosomes.