Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 488-722 |
| Cow position: | chr5:18657850-18657605 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 496-758 |
| Cow position: | chr5:47991394-47991670 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 497-737 |
| Cow position: | chr5:12219463-12219217 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 498-924 |
| Cow position: | chr5:64103702-64104134 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 170 |
| Conread position: | 501-860 |
| Cow position: | chr5:21514581-21514925 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 87 |
| Conread position: | 501-924 |
| Cow position: | chr5:18585288-18584843 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 503-745 |
| Cow position: | chr5:8764588-8764338 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 504-695 |
| Cow position: | chr5:51921088-51921289 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 504-743 |
| Cow position: | chr5:24888884-24888638 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-745 |
| Cow position: | chr5:48135949-48135707 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 504-873 |
| Cow position: | chr5:64796458-64796081 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 504-899 |
| Cow position: | chr5:75573094-75573496 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 505-766 |
| Cow position: | chr5:70720474-70720736 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 78 |
| Conread position: | 505-918 |
| Cow position: | chr5:47619297-47619715 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 156 |
| Conread position: | 505-924 |
| Cow position: | chr5:29536787-29537225 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 280 |
| Conread position: | 507-924 |
| Cow position: | chr5:29076254-29075833 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 15, 265 |
| Conread position: | 510-824 |
| Cow position: | chr5:42183120-42183442 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 264 |
| Conread position: | 511-768 |
| Cow position: | chr5:23742655-23742395 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 77, 129 |
| Conread position: | 514-757 |
| Cow position: | chr5:42820482-42820233 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 514-911 |
| Cow position: | chr5:9969770-9969386 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 514-924 |
| Cow position: | chr5:25896134-25896544 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 156 |
| Conread position: | 515-754 |
| Cow position: | chr5:13421221-13420983 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 515-759 |
| Cow position: | chr5:46273104-46273347 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chr5:47358072-47357832 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 159, 68 |
| Conread position: | 515-759 |
| Cow position: | chr5:73887692-73887938 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 515-760 |
| Cow position: | chr5:42099782-42100024 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 100, 92 |
| Conread position: | 515-760 |
| Cow position: | chr5:60969506-60969261 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-767 |
| Cow position: | chr5:24456150-24456400 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 515-768 |
| Cow position: | chr5:21043187-21042924 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 515-918 |
| Cow position: | chr5:66106922-66106512 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 515-924 |
| Cow position: | chr5:19914794-19914389 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 73 |
| Conread position: | 515-924 |
| Cow position: | chr5:23628729-23628316 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 515-924 |
| Cow position: | chr5:47771617-47772031 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 515-924 |
| Cow position: | chr5:70705279-70704883 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 115 |
| Conread position: | 516-760 |
| Cow position: | chr5:56260703-56260464 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 516-924 |
| Cow position: | chr5:39800523-39800934 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 517-707 |
| Cow position: | chr5:13730695-13730506 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 518-867 |
| Cow position: | chr5:42785343-42785694 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 520-760 |
| Cow position: | chr5:64039156-64038913 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 86 |
| Conread position: | 520-912 |
| Cow position: | chr5:30204819-30204420 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 520-912 |
| Cow position: | chr5:63515617-63516010 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 523-873 |
| Cow position: | chr5:48275002-48275359 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 300 |
| Conread position: | 524-912 |
| Cow position: | chr5:37372342-37371959 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 262 |
| Conread position: | 524-924 |
| Cow position: | chr5:72939388-72939793 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 526-760 |
| Cow position: | chr5:74780451-74780216 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 530-851 |
| Cow position: | chr5:2441014-2441338 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 237 |
| Conread position: | 532-767 |
| Cow position: | chr5:9368895-9368660 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 550-760 |
| Cow position: | chr5:67962630-67962418 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 557-924 |
| Cow position: | chr5:47839748-47840121 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 603-768 |
| Cow position: | chr5:49920495-49920328 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 5 |
| Conread position: | 650-867 |
| Cow position: | chr5:18710033-18709823 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 155 |
Show alignments to all cow chromosomes.